mRNA_M-pyrifera_M_contig123435.4798.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123435.4798.1
Unique NamemRNA_M-pyrifera_M_contig123435.4798.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Match: A0A2E7KIE6_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KIE6_9PLAN)

HSP 1 Score: 306 bits (783), Expect = 5.210e-103
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 1
Query:    1 MSNPEEEAEIDATPENIRIRAWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRNSWAEGGWALDEHIWRLPDEERVAIIEEITAAF 462
            MSNPEEEAEIDATPENIR  AWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGR+SWAEGGWALDE+IWRLPDEERVAIIEEITAAF
Sbjct:    1 MSNPEEEAEIDATPENIR--AWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRDSWAEGGWALDENIWRLPDEERVAIIEEITAAF 152          
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Match: A0A350KJB7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KJB7_9PLAN)

HSP 1 Score: 208 bits (530), Expect = 1.270e-64
Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 1
Query:    1 MSNPEEEAEIDATPENIRIRAWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRNSWAEGGWALDEHIWRLPDEERVAIIEEITAAF 462
            M++PE E E+ +  ENI++  WA+K P+TEW HQDWDME+A +++ADLILSL  EDCPQSDFFVSCLY+LVGS   ++G SISR +ID+LL +GE+S N+NV HWV+RSRAFL NPE++ ++ W  GGWALD+ IWR PDEERVAIIEEI  AF
Sbjct:    1 MTDPEHEYEMGSILENIQV--WAQKTPDTEWPHQDWDMEMASSEHADLILSLTSEDCPQSDFFVSCLYILVGSCVASSGASISRAKIDDLLLKGEKSSNKNVLHWVDRSRAFLKNPEQYDQSIWTGGGWALDDEIWRYPDEERVAIIEEIIDAF 152          
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Match: UPI00118C89B9 (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI00118C89B9)

HSP 1 Score: 187 bits (474), Expect = 2.070e-58
Identity = 86/138 (62.32%), Postives = 113/138 (81.88%), Query Frame = 1
Query:    1 MSNPEEEAEIDATPENIRIRAWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRNSWAEGGWALDEHIWRL 414
            M++PE E E+ +T ENI++  WA+K P+TEW HQDWDME+A +++ADLILSL  E+C QSDFFVSCLY+LVGS   ++G SISR +IDELL +GE+S N+NV HWVNRSRAFL NPE++ R++W +GGWALD+ IW +
Sbjct:    1 MTDPEHEYEMGSTLENIQV--WAEKAPDTEWPHQDWDMEMASSEHADLILSLTSENCSQSDFFVSCLYILVGSCVASSGASISRTKIDELLLEGEKSSNKNVLHWVNRSRAFLKNPEEYDRSTWIKGGWALDDEIWSI 136          
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Match: A0A8J6I944_9ACTN (Uncharacterized protein n=1 Tax=Sporichthya sp. TaxID=65475 RepID=A0A8J6I944_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-12
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   34 ATPENIRIRAWAKKDPNTEWVHQDWDMEVAQAKYADLILSLV-EEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRNSWAEGGWA 390
            A P    +RAWAK   N     +DWD+ +A  +YAD+++  V  E CP   + ++  YLL G+   +    ++R  ++E+++    + N  ++ WV RS   + NP +F    W  GG+A
Sbjct:   12 ANPSPAELRAWAKC--NDLEPMEDWDLVLADLRYADVLVEQVANEACPSQRYLLAARYLLAGNAVRSGFTGLARADLEEVVATARATGNAWLEFWVARSEQLMANPAEFDYALWCAGGFA 129          
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Match: A0A5C6ET16_9BACT (Uncharacterized protein n=6 Tax=Rubripirellula TaxID=1579505 RepID=A0A5C6ET16_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 7.400e-10
Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = 1
Query:   40 PENIRIRAWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEE-DCPQSDFFVSCLYLLVGSYFT-TNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRNSW 372
            P    + AW +    T W  QDWDM V      DLIL+   +  C Q +FFV CLY LVG +   + G ++   +I+ELL+  +   +++V  W + + A       F  N W
Sbjct:    6 PSPSDVAAWVQLGIPTPWPDQDWDMYVCNGLNDDLILAYANDPSCIQREFFVHCLYQLVGDFTAWSTGNTVLGARIEELLANVDAKSHEDVSKWRDETIALRGGELSFDLNYW 118          
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Match: M2A681_9BACT (Uncharacterized protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M2A681_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 9.880e-9
Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 1
Query:   10 PEEEAEIDATPENIR------IRAWAKKDPNTEWVHQDWDMEVAQAKYADLILSLVEED-CPQSDFFVSCLYLLVGSY--FTTNGKSISRNQIDELLSQGEQSKNQNVQHWVNRSRAFLLNPEKFGRNSW 372
            P  + E  AT  N+       + +W +    T W  QDWDM V      DLIL+   +  C Q +FFV CLY LVG +  ++T    ++  +I+ELL+  ++  + +V+ W + + A      +F  N W
Sbjct:   18 PNGQLEFTATKMNVYDPSPSDVASWVELGQPTPWPDQDWDMYVCNGLNDDLILAYANDPACIQREFFVHCLYQLVGDFTAWSTENADLAA-RIEELLANVDEKCHDDVRKWRDETIALRGGTMRFDLNYW 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123435.4798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KIE6_9PLAN5.210e-10397.40Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A350KJB7_9PLAN1.270e-6464.29Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI00118C89B92.070e-5862.32hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A8J6I944_9ACTN2.420e-1230.83Uncharacterized protein n=1 Tax=Sporichthya sp. Ta... [more]
A0A5C6ET16_9BACT7.400e-1032.74Uncharacterized protein n=6 Tax=Rubripirellula Tax... [more]
M2A681_9BACT9.880e-930.77Uncharacterized protein n=2 Tax=Rhodopirellula Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123435contigM-pyrifera_M_contig123435:1..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog1405.DJ92_5189
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGSS@1,33AIW@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.99374-CDS-M-pyrifera_M_contig123435:0..4621622815752.99374-CDS-M-pyrifera_M_contig123435:0..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123435 1..462 -
1692277553.1493344-CDS-M-pyrifera_M_contig123435:0..4621692277553.1493344-CDS-M-pyrifera_M_contig123435:0..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123435 1..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123435.4798.1prot_M-pyrifera_M_contig123435.4798.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123435 1..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123435.4798.1

>prot_M-pyrifera_M_contig123435.4798.1 ID=prot_M-pyrifera_M_contig123435.4798.1|Name=mRNA_M-pyrifera_M_contig123435.4798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
MSNPEEEAEIDATPENIRIRAWAKKDPNTEWVHQDWDMEVAQAKYADLIL
SLVEEDCPQSDFFVSCLYLLVGSYFTTNGKSISRNQIDELLSQGEQSKNQ
NVQHWVNRSRAFLLNPEKFGRNSWAEGGWALDEHIWRLPDEERVAIIEEI
TAAF
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mRNA from alignment at M-pyrifera_M_contig123435:1..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123435.4798.1 ID=mRNA_M-pyrifera_M_contig123435.4798.1|Name=mRNA_M-pyrifera_M_contig123435.4798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig123435:1..462- (Macrocystis pyrifera P11B4 male)
ATGTCAAATCCTGAAGAGGAAGCAGAGATAGATGCCACTCCCGAAAACAT ACGGATACGGGCCTGGGCTAAAAAAGATCCTAATACTGAATGGGTTCATC AAGACTGGGACATGGAGGTAGCACAAGCGAAGTATGCAGACCTGATCTTA TCGCTGGTCGAGGAAGACTGCCCTCAGAGTGATTTCTTTGTGAGCTGTCT GTATCTACTCGTTGGTTCGTACTTCACTACCAACGGGAAATCTATTTCGC GCAACCAGATCGATGAGTTACTGAGTCAGGGAGAGCAGAGCAAAAACCAG AACGTACAACACTGGGTAAATCGCTCCCGTGCCTTCCTATTGAACCCAGA AAAGTTTGGACGAAACAGCTGGGCAGAAGGGGGCTGGGCACTAGATGAGC ATATCTGGCGCTTACCAGATGAGGAAAGAGTAGCCATCATCGAAGAAATT ACAGCAGCCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123435:1..462-

>mRNA_M-pyrifera_M_contig123435.4798.1 ID=mRNA_M-pyrifera_M_contig123435.4798.1|Name=mRNA_M-pyrifera_M_contig123435.4798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig123435:1..462- (Macrocystis pyrifera P11B4 male)
ATGTCAAATCCTGAAGAGGAAGCAGAGATAGATGCCACTCCCGAAAACAT
ACGGATACGGGCCTGGGCTAAAAAAGATCCTAATACTGAATGGGTTCATC
AAGACTGGGACATGGAGGTAGCACAAGCGAAGTATGCAGACCTGATCTTA
TCGCTGGTCGAGGAAGACTGCCCTCAGAGTGATTTCTTTGTGAGCTGTCT
GTATCTACTCGTTGGTTCGTACTTCACTACCAACGGGAAATCTATTTCGC
GCAACCAGATCGATGAGTTACTGAGTCAGGGAGAGCAGAGCAAAAACCAG
AACGTACAACACTGGGTAAATCGCTCCCGTGCCTTCCTATTGAACCCAGA
AAAGTTTGGACGAAACAGCTGGGCAGAAGGGGGCTGGGCACTAGATGAGC
ATATCTGGCGCTTACCAGATGAGGAAAGAGTAGCCATCATCGAAGAAATT
ACAGCAGCCTTTATGTCAAATCCTGAAGAGGAAGCAGAGATAGATGCCAC
TCCCGAAAACATACGGATACGGGCCTGGGCTAAAAAAGATCCTAATACTG
AATGGGTTCATCAAGACTGGGACATGGAGGTAGCACAAGCGAAGTATGCA
GACCTGATCTTATCGCTGGTCGAGGAAGACTGCCCTCAGAGTGATTTCTT
TGTGAGCTGTCTGTATCTACTCGTTGGTTCGTACTTCACTACCAACGGGA
AATCTATTTCGCGCAACCAGATCGATGAGTTACTGAGTCAGGGAGAGCAG
AGCAAAAACCAGAACGTACAACACTGGGTAAATCGCTCCCGTGCCTTCCT
ATTGAACCCAGAAAAGTTTGGACGAAACAGCTGGGCAGAAGGGGGCTGGG
CACTAGATGAGCATATCTGGCGCTTACCAGATGAGGAAAGAGTAGCCATC
ATCGAAGAAATTACAGCAGCCTTT
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