mRNA_M-pyrifera_M_contig12341.4792.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12341.4792.1
Unique NamemRNA_M-pyrifera_M_contig12341.4792.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12341.4792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12341contigM-pyrifera_M_contig12341:4377..5122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12341.4792.1prot_M-pyrifera_M_contig12341.4792.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12341 4406..5116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.6317923-UTR-M-pyrifera_M_contig12341:4376..44051622815752.6317923-UTR-M-pyrifera_M_contig12341:4376..4405Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12341 4377..4405 +
1692277552.938861-UTR-M-pyrifera_M_contig12341:4376..44051692277552.938861-UTR-M-pyrifera_M_contig12341:4376..4405Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12341 4377..4405 +
1622815752.6769114-UTR-M-pyrifera_M_contig12341:5116..51221622815752.6769114-UTR-M-pyrifera_M_contig12341:5116..5122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12341 5117..5122 +
1692277552.9673185-UTR-M-pyrifera_M_contig12341:5116..51221692277552.9673185-UTR-M-pyrifera_M_contig12341:5116..5122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12341 5117..5122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.6471531-CDS-M-pyrifera_M_contig12341:4405..44891622815752.6471531-CDS-M-pyrifera_M_contig12341:4405..4489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12341 4406..4489 +
1692277552.9485672-CDS-M-pyrifera_M_contig12341:4405..44891692277552.9485672-CDS-M-pyrifera_M_contig12341:4405..4489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12341 4406..4489 +
1622815752.657034-CDS-M-pyrifera_M_contig12341:4996..51161622815752.657034-CDS-M-pyrifera_M_contig12341:4996..5116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12341 4997..5116 +
1692277552.9577324-CDS-M-pyrifera_M_contig12341:4996..51161692277552.9577324-CDS-M-pyrifera_M_contig12341:4996..5116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12341 4997..5116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12341.4792.1

>prot_M-pyrifera_M_contig12341.4792.1 ID=prot_M-pyrifera_M_contig12341.4792.1|Name=mRNA_M-pyrifera_M_contig12341.4792.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MYLATVVAMLLASRFMPKPKSGPLNGSESQPLLTQDKDDLEAEIDEYGSR
PSSNGAARSRSSMRGAV*
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mRNA from alignment at M-pyrifera_M_contig12341:4377..5122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12341.4792.1 ID=mRNA_M-pyrifera_M_contig12341.4792.1|Name=mRNA_M-pyrifera_M_contig12341.4792.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=746bp|location=Sequence derived from alignment at M-pyrifera_M_contig12341:4377..5122+ (Macrocystis pyrifera P11B4 male)
AGCGTTCATTGATAATCGGTGTCTGCGGGATGTATCTGGCGACTGTGGTC
GCCATGCTGCTAGCTTCGAGGTTCATGCCCAAGCCGAAATCGGGACCCTT
GAACGGAAGCGAGGCGAGTTCAAAAGCATCGGAAAATCGATCGGAAAAGA
AATACCCAACCCCCCCCTCTGCCCTGATCGCCCCCATGTACGCCAGTTTG
AGAGTTTGTGGTAGGCGTTGCTAAGACATGCCTTCACTCAGACACTTTCG
CATAAATCAACTCCTGCTGGGGCCTAGTTCGAACTGCCGCACACGGTGCC
GCCTGGTCTGAGCACCGACAATATGGCATGGCAAGCGTATTTTCCCTGGA
CTTGGACAGGCGTAATCCCCGAGAGGTCTTGACCCGCCCCGACCCACCCC
GTTCCTACCCGACCTTCTACTGATGGCGAATGCCCTTTCTCAACATGCCC
CAACACAATGACTTTCGTTTCCCATGTTGTACGTGAGAAAACTCGTTGTC
GGAAGTCATTCCCTTTTTGGAGCCCCGTCGCCCTTGTCGATAGCAGCTAT
CATAGTCTGCCGCGCATCTTCATGACTGTAGTCTGCTCTCGTCCTCTCTC
TCCTTCTCGCTCTCTCGCAGAGCCAACCGCTTCTGACCCAGGATAAAGAC
GATTTGGAGGCGGAAATCGACGAGTACGGCTCGCGACCGAGTAGTAACGG
CGCAGCCCGCAGCCGCAGTAGCATGAGGGGGGCGGTGTAGTGTAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12341:4377..5122+

>mRNA_M-pyrifera_M_contig12341.4792.1 ID=mRNA_M-pyrifera_M_contig12341.4792.1|Name=mRNA_M-pyrifera_M_contig12341.4792.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig12341:4377..5122+ (Macrocystis pyrifera P11B4 male)
ATGTATCTGGCGACTGTGGTCGCCATGCTGCTAGCTTCGAGGTTCATGCC
CAAGCCGAAATCGGGACCCTTGAACGGAAGCGAGATGTATCTGGCGACTG
TGGTCGCCATGCTGCTAGCTTCGAGGTTCATGCCCAAGCCGAAATCGGGA
CCCTTGAACGGAAGCGAGAGCCAACCGCTTCTGACCCAGGATAAAGACGA
TTTGGAGGCGGAAATCGACGAGTACGGCTCGCGACCGAGTAGTAACGGCG
CAGCCCGCAGCCGCAGTAGCATGAGGGGGGCGGTGTAGAGCCAACCGCTT
CTGACCCAGGATAAAGACGATTTGGAGGCGGAAATCGACGAGTACGGCTC
GCGACCGAGTAGTAACGGCGCAGCCCGCAGCCGCAGTAGCATGAGGGGGG
CGGTGTAG
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