mRNA_M-pyrifera_M_contig123386.4786.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123386.4786.1
Unique NamemRNA_M-pyrifera_M_contig123386.4786.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A540K6A2_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540K6A2_MALBA)

HSP 1 Score: 86.3 bits (212), Expect = 8.880e-19
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHS---RTAPGS----TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+  NL+   D E    ++ F ++   ++F SYQE   W +LE PP   +ID V AENS RW P ++  L S   R A GS    +  VLPK+GHW+H+DNP GL  ++   +  L
Sbjct:   83 WIGTNLKKQGDHE----TWAFNLDGAVQMFKSYQEKSYWPLLEHPPKDMAIDVVRAENSDRWDPDVVQRLGSLANREANGSEGKVSFHVLPKSGHWVHVDNPKGLLEIVAPRISSL 194          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A498IDE6_MALDO ((R)-mandelonitrile lyase n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498IDE6_MALDO)

HSP 1 Score: 89.7 bits (221), Expect = 1.310e-18
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHS---RTAPGS----TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+  NL+   D E    ++ F ++   ++F SYQE   W +LE PP  T+ID V AENS RW P ++  L S   R A GS    ++ VLPK+GHW+H+DNP GL  ++   +  L
Sbjct: 1391 WIGTNLKKQGDHE----TWAFNLDGAVQMFKSYQEKSYWPLLEHPPKDTAIDVVRAENSDRWDPDVVQRLGSLANREANGSEGKVSVHVLPKSGHWVHVDNPKGLLEIVAPRISSL 1502          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A7I8KT16_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KT16_SPIIN)

HSP 1 Score: 88.2 bits (217), Expect = 1.940e-18
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHSRTAPG---------STIQVLPKAGHWLHMDNPVGLSSLLV 309
            W+ +NL+    ++ + +++ F +++  ++F SY+E   W +LE PP G  I+ VCAENS RW+P +   L     P          +T+ VLP++GHW+H+DNP GL  ++V
Sbjct:  241 WIASNLK----KDGEHLTWAFDLQAAIDMFDSYRERSYWTLLEHPPGGLEIEMVCAENSDRWSPQVNARLEKLAHPQRDGGGVEGKTTVHVLPRSGHWVHVDNPKGLLEIMV 348          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A7J7NFU6_9MAGN (AB hydrolase-1 domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NFU6_9MAGN)

HSP 1 Score: 87.8 bits (216), Expect = 2.140e-18
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHSRTAPGS--------TIQVLPKAGHWLHMDNPVGLSSLL 306
            W+  NL+ + D E    ++ F ++   E+F SY+E   W +LE PP+G  I+ V AENS RW P ++ +L S  A  +        ++ VLPK+GHW+H+DNP GL  +L
Sbjct:  217 WIGTNLKKSGDHE----TWAFDIQGANEMFESYREESYWSLLEDPPNGLQIEIVRAENSDRWRPDVVQQLESLAARRAKDDSEGKVSVHVLPKSGHWVHVDNPKGLLEIL 322          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: D7TJ98_VITVI (AB hydrolase-1 domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=D7TJ98_VITVI)

HSP 1 Score: 86.3 bits (212), Expect = 7.910e-18
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHS---RTAPGS----TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+ +NL+ + + E    ++ F +E   ++F SY+E   W +LE PP G  I  V AENS RW P ++  L S   R   GS    ++ VLPKAGHW+H+DNP GL  ++   L  L
Sbjct:  219 WIGSNLKKSGEHE----TWAFNLEGAVQMFNSYRETDYWSLLEHPPQGMEITIVRAENSDRWDPDVIQRLESLAAREGNGSEGKVSVHVLPKAGHWVHVDNPKGLLDIVAPKLASL 330          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A438JSE9_VITVI (Ubiquitin-60S ribosomal protein L40 n=101 Tax=cellular organisms TaxID=131567 RepID=A0A438JSE9_VITVI)

HSP 1 Score: 86.3 bits (212), Expect = 2.070e-17
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHS---RTAPGS----TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+ +NL+ + + E    ++ F +E   ++F SY+E   W +LE PP G  I  V AENS RW P ++  L S   R   GS    ++ VLPKAGHW+H+DNP GL  ++   L  L
Sbjct:  283 WIGSNLKKSGEHE----TWAFNLEGAVQMFNSYRETDYWSLLEHPPQGMEITIVRAENSDRWDPDVIQRLESLAAREGNGSEGKVSVHVLPKAGHWVHVDNPKGLLDIVAPKLASL 394          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A835LJY9_9MAGN (AB hydrolase-1 domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LJY9_9MAGN)

HSP 1 Score: 85.5 bits (210), Expect = 3.070e-17
Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHSRTAPGS---TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+ +NL+ + D E    +  F ++   ++F SY+E   W +LE PP G  +  + AENS RW+P+++  L S     +   ++ +LPK+GHW+H+DNP GL  ++   LK +
Sbjct:  328 WIGSNLKKSGDHE----TLAFNLDGAVQMFNSYREQSYWSLLEHPPEGLQVAVLRAENSDRWSPSVVQRLESLADNSNGKISVHLLPKSGHWVHVDNPKGLLEIVAPSLKTI 435          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A166ESG9_DAUCS (AB hydrolase-1 domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166ESG9_DAUCS)

HSP 1 Score: 84.3 bits (207), Expect = 3.900e-17
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAM---MDELHSRTAPGS----TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+ +NL+    + E+G ++ F +E   E+F SY++   W +LE PP G  I  V AENS RW P +   ++ L SR   G     ++ VLPK+GHW+H+DNP GL  ++   +  L
Sbjct:  214 WIGSNLK----KTEEGETWAFDLEGAVEMFNSYRKTDYWPLLENPPEGMEIAIVRAENSDRWDPDVVQRLESLASRKVDGGGGKVSVHVLPKSGHWVHVDNPKGLLEIVTPKISSL 325          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A7N0UBQ3_KALFE (AB hydrolase-1 domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UBQ3_KALFE)

HSP 1 Score: 84.0 bits (206), Expect = 5.740e-17
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHS------RTAPGS-TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+ +NL+ + D E    ++ F ++   ++F SY+E   W +LE PP+GT I  V AE S RW   ++  L +      R A G  ++ VLPKAGHW+H+DNP GL  ++   +  L
Sbjct:  220 WIGSNLKKSGDHE----TWAFNLDGAIQMFNSYREKSYWSLLERPPAGTEIAMVVAEKSDRWDSNIIQRLENLASREPREAHGKLSVTVLPKAGHWVHVDNPKGLLDIIAPKMASL 331          
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Match: A0A251N9L3_PRUPE (AB hydrolase-1 domain-containing protein n=9 Tax=Prunus TaxID=3754 RepID=A0A251N9L3_PRUPE)

HSP 1 Score: 84.0 bits (206), Expect = 6.240e-17
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 WMVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSIDWVCAENSPRWTPAMMDELHS---RTAPGS----TIQVLPKAGHWLHMDNPVGLSSLLVRVLKDL 327
            W+  NL+   D E    ++ F ++ + ++F SYQE   W +LE PP    I  V AENS RW P ++  L S   R   GS    ++ VLPK+GHW+H+DNP GL  ++   +  L
Sbjct:  228 WIGTNLKKQGDHE----TWAFNLDGVVQMFKSYQEKSYWHLLEQPPKDMEIAVVRAENSDRWDPDVIQRLGSLANREGDGSEGKFSVHVLPKSGHWVHVDNPKGLLEIVAPRISSL 339          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123386.4786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A540K6A2_MALBA8.880e-1939.66Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A498IDE6_MALDO1.310e-1840.52(R)-mandelonitrile lyase n=1 Tax=Malus domestica T... [more]
A0A7I8KT16_SPIIN1.940e-1835.71Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A7J7NFU6_9MAGN2.140e-1839.09AB hydrolase-1 domain-containing protein n=1 Tax=K... [more]
D7TJ98_VITVI7.910e-1839.66AB hydrolase-1 domain-containing protein n=2 Tax=V... [more]
A0A438JSE9_VITVI2.070e-1739.66Ubiquitin-60S ribosomal protein L40 n=101 Tax=cell... [more]
A0A835LJY9_9MAGN3.070e-1734.82AB hydrolase-1 domain-containing protein n=1 Tax=C... [more]
A0A166ESG9_DAUCS3.900e-1737.93AB hydrolase-1 domain-containing protein n=2 Tax=D... [more]
A0A7N0UBQ3_KALFE5.740e-1737.07AB hydrolase-1 domain-containing protein n=1 Tax=K... [more]
A0A251N9L3_PRUPE6.240e-1737.93AB hydrolase-1 domain-containing protein n=9 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123386contigM-pyrifera_M_contig123386:139..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.6
Seed ortholog evalue6.4e-14
Seed eggNOG ortholog102107.XP_008243516.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha beta hydrolase domain-containing protein 11-like
EggNOG OGs37QUH@33090,3GAJV@35493,4JKV7@91835,COG0596@1,KOG2382@2759
COG Functional cat.J
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123386.4786.1prot_M-pyrifera_M_contig123386.4786.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123386 139..520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.2936-CDS-M-pyrifera_M_contig123386:138..2831622815752.2936-CDS-M-pyrifera_M_contig123386:138..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123386 139..283 -
1692277552.758961-CDS-M-pyrifera_M_contig123386:138..2831692277552.758961-CDS-M-pyrifera_M_contig123386:138..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123386 139..283 -
1622815752.3090878-CDS-M-pyrifera_M_contig123386:338..5201622815752.3090878-CDS-M-pyrifera_M_contig123386:338..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123386 339..520 -
1692277552.7700639-CDS-M-pyrifera_M_contig123386:338..5201692277552.7700639-CDS-M-pyrifera_M_contig123386:338..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123386 339..520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.3219361-UTR-M-pyrifera_M_contig123386:520..5231622815752.3219361-UTR-M-pyrifera_M_contig123386:520..523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123386 521..523 -
1692277552.77926-UTR-M-pyrifera_M_contig123386:520..5231692277552.77926-UTR-M-pyrifera_M_contig123386:520..523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123386 521..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123386.4786.1

>prot_M-pyrifera_M_contig123386.4786.1 ID=prot_M-pyrifera_M_contig123386.4786.1|Name=mRNA_M-pyrifera_M_contig123386.4786.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MVANLRYNSDREEDGMSFKFRMESMGELFASYQEYCAWDVLEAPPSGTSI
DWVCAENSPRWTPAMMDELHSRTAPGSTIQVLPKAGHWLHMDNPVGLSSL
LVRVLKDL*
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mRNA from alignment at M-pyrifera_M_contig123386:139..523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123386.4786.1 ID=mRNA_M-pyrifera_M_contig123386.4786.1|Name=mRNA_M-pyrifera_M_contig123386.4786.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=385bp|location=Sequence derived from alignment at M-pyrifera_M_contig123386:139..523- (Macrocystis pyrifera P11B4 male)
TGGATGGTTGCCAACCTGCGGTACAACTCTGACCGCGAGGAGGACGGCAT GTCCTTCAAGTTCAGGATGGAGTCGATGGGCGAGCTCTTCGCCTCCTACC AGGAATACTGCGCCTGGGACGTGCTTGAGGCACCTCCCTCGGGCACCTCC ATCGATTGGGTCTGCGCCGAGAACAGCCCTCGTTGGTGCGTCCCTCTTCC CTGCCTGCCTGTGCCCCCGGGCCCGCCCTGACCGCCGCAGGACGCCCGCC ATGATGGACGAGCTGCACTCGAGGACTGCGCCGGGCTCGACGATTCAAGT GCTGCCCAAGGCCGGACACTGGCTGCACATGGATAACCCAGTCGGCTTGT CGTCCCTCCTCGTTCGTGTGCTCAAGGATCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123386:139..523-

>mRNA_M-pyrifera_M_contig123386.4786.1 ID=mRNA_M-pyrifera_M_contig123386.4786.1|Name=mRNA_M-pyrifera_M_contig123386.4786.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig123386:139..523- (Macrocystis pyrifera P11B4 male)
ATGGTTGCCAACCTGCGGTACAACTCTGACCGCGAGGAGGACGGCATGTC
CTTCAAGTTCAGGATGGAGTCGATGGGCGAGCTCTTCGCCTCCTACCAGG
AATACTGCGCCTGGGACGTGCTTGAGGCACCTCCCTCGGGCACCTCCATC
GATTGGGTCTGCGCCGAGAACAGCCCTCGTTGATGGTTGCCAACCTGCGG
TACAACTCTGACCGCGAGGAGGACGGCATGTCCTTCAAGTTCAGGATGGA
GTCGATGGGCGAGCTCTTCGCCTCCTACCAGGAATACTGCGCCTGGGACG
TGCTTGAGGCACCTCCCTCGGGCACCTCCATCGATTGGGTCTGCGCCGAG
AACAGCCCTCGTTGGACGCCCGCCATGATGGACGAGCTGCACTCGAGGAC
TGCGCCGGGCTCGACGATTCAAGTGCTGCCCAAGGCCGGACACTGGCTGC
ACATGGATAACCCAGTCGGCTTGTCGTCCCTCCTCGTTCGTGTGCTCAAG
GATCTCTAGGACGCCCGCCATGATGGACGAGCTGCACTCGAGGACTGCGC
CGGGCTCGACGATTCAAGTGCTGCCCAAGGCCGGACACTGGCTGCACATG
GATAACCCAGTCGGCTTGTCGTCCCTCCTCGTTCGTGTGCTCAAGGATCT
CTAG
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