mRNA_M-pyrifera_M_contig123341.4779.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123341.4779.1
Unique NamemRNA_M-pyrifera_M_contig123341.4779.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: UPI000719CBB0 (ATP-dependent RNA helicase DHX8-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CBB0)

HSP 1 Score: 163 bits (412), Expect = 2.070e-48
Identity = 78/107 (72.90%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            T+ +QR +LP+ KL+ +L+ AV +NQ+L+V+GETGSGKTTQI Q+LAE+G+T +G++G TQPRRVAAMSVAKRV+EEFGCRLGQEVGYTIRFEDCTS ETQ+KYMTD
Sbjct:   33 TLLEQRESLPIYKLKEELVKAVNDNQILIVIGETGSGKTTQITQYLAESGYTVRGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETQVKYMTD 139
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A7S0HHU2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHU2_9CRYP)

HSP 1 Score: 159 bits (403), Expect = 9.180e-48
Identity = 77/107 (71.96%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            T++QQR +LP+   R   L ++ ++Q+L+V+GETGSGKTTQ+PQ+LAEAG+T +G++G+TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTS ET IKYMTD
Sbjct:   50 TIKQQRESLPIFLFRDAFLQSMKDHQILIVIGETGSGKTTQMPQYLAEAGYTTRGKIGITQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETAIKYMTD 156
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A5B7GD73_PORTR (ATP-dependent RNA helicase DHX8 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7GD73_PORTR)

HSP 1 Score: 162 bits (410), Expect = 2.700e-47
Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            T+ +QR +LP+ KLR +L+ A+  NQ+L+VVGETGSGKTTQI Q+LAEAG TA+G++G TQPRRVAAMSVAKRV+EEFGCRLGQEVGYTIRFEDCTS+ET IKYMTD
Sbjct:    2 TILEQRQSLPIYKLRDELIKAIDGNQILIVVGETGSGKTTQITQYLAEAGFTAKGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSSETVIKYMTD 108
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A7R8WK48_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WK48_9CRUS)

HSP 1 Score: 162 bits (411), Expect = 9.520e-47
Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            ++Q+QR +LP+ KL+ QL+ AV ENQ+L+V+GETGSGKTTQI Q+LAEAG TA+G++G T+PRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTS  T IKYMTD
Sbjct:   35 SIQKQRQSLPIFKLKDQLVQAVKENQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTEPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPRTVIKYMTD 141
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: UPI001442E654 (ATP-dependent RNA helicase DHX8-like n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI001442E654)

HSP 1 Score: 163 bits (412), Expect = 2.890e-46
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            T+ +QR +LP+ KLR  L+ AV +NQ+L+V+GETGSGKTTQI Q+LAEAG TA+G++G TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCT  ET IKYMTD
Sbjct:  227 TLLEQRQSLPIYKLRDDLVKAVTDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTGPETNIKYMTD 333
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A5E4BBW1_MARMO (Helicase ATP-binding domain-containing protein n=1 Tax=Marmota monax TaxID=9995 RepID=A0A5E4BBW1_MARMO)

HSP 1 Score: 160 bits (404), Expect = 3.980e-46
Identity = 78/104 (75.00%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:   10 QQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            +QR +LP+ KL+ QL+ AV +NQ+L+V+GETGSGKTTQI Q+LAEAG+T++G++G TQPRRVAAMSVAKRV+EEFGC LGQEVGYTIRFEDCTS ET IKYMTD
Sbjct:   57 EQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTD 160
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A6J5UEQ1_PRUAR (Uncharacterized protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5UEQ1_PRUAR)

HSP 1 Score: 162 bits (409), Expect = 6.600e-46
Identity = 78/107 (72.90%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            ++Q+QR +LP+ KL+ +L+AAV ENQ+LVV+GETGSGKTTQ+ Q+LAEAG+T  G++G TQPRRVAAMSVAKRVAEEFGCRLG+EVGY IRFEDCT  +T IKYMTD
Sbjct:  139 SIQEQRQSLPIYKLKKELIAAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTD 245
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A293ME91_ORNER (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293ME91_ORNER)

HSP 1 Score: 162 bits (411), Expect = 6.770e-46
Identity = 80/107 (74.77%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            T+ +QR +LP+ KL+ +L+ AV +NQ+L+V+GETGSGKTTQI Q+LAEAG TA+G++G TQPRRVAAMSVAKRV+EEFGCRLGQEVGYTIRFEDCTS+ET IKYMTD
Sbjct:  211 TILEQRQSLPIYKLKDELVKAVTDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTD 317
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BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A8D8QEI9_9HEMI (ATP-dependent RNA helicase DHX8 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8QEI9_9HEMI)

HSP 1 Score: 164 bits (415), Expect = 6.870e-46
Identity = 81/107 (75.70%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            T+ +QR +LP+ KL+ +L+ AV +NQ+L+V+GETGSGKTTQI Q+LAEAG TA+G++G TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTS+ET IKYMTD
Sbjct:  401 TIVEQRQSLPIYKLKDELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTD 507
[Close]
BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Match: A0A397VN38_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397VN38_9GLOM)

HSP 1 Score: 155 bits (393), Expect = 7.150e-46
Identity = 75/107 (70.09%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 TMQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGHTAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQIKYMTD 321
            ++Q+QR +LP+ K+R QL+ A+ ENQ L++VG+TGSGKTTQ+ Q+L E G  A+G++G TQPRRVAAMSVAKRVAEE GCRLG+EVGYTIRFEDCTS  TQIKYMTD
Sbjct:   46 SIQEQRQSLPIFKMRTQLINAIKENQQLIIVGDTGSGKTTQMTQYLVEEGFAARGKIGCTQPRRVAAMSVAKRVAEEVGCRLGEEVGYTIRFEDCTSPNTQIKYMTD 152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123341.4779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000719CBB02.070e-4872.90ATP-dependent RNA helicase DHX8-like n=1 Tax=Priap... [more]
A0A7S0HHU2_9CRYP9.180e-4871.96Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A5B7GD73_PORTR2.700e-4775.70ATP-dependent RNA helicase DHX8 n=1 Tax=Portunus t... [more]
A0A7R8WK48_9CRUS9.520e-4775.70Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
UPI001442E6542.890e-4675.70ATP-dependent RNA helicase DHX8-like n=1 Tax=Megal... [more]
A0A5E4BBW1_MARMO3.980e-4675.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A6J5UEQ1_PRUAR6.600e-4672.90Uncharacterized protein n=1 Tax=Prunus armeniaca T... [more]
A0A293ME91_ORNER6.770e-4674.77Helicase ATP-binding domain-containing protein (Fr... [more]
A0A8D8QEI9_9HEMI6.870e-4675.70ATP-dependent RNA helicase DHX8 n=1 Tax=Cacopsylla... [more]
A0A397VN38_9GLOM7.150e-4670.09P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123341contigM-pyrifera_M_contig123341:170..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score167.9
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog192875.XP_004343142.1
Preferred nameDHX8
KEGG koko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase
EggNOG OGs38C5G@33154,COG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.A
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons1
Model size321
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.944163-UTR-M-pyrifera_M_contig123341:169..1721622815751.944163-UTR-M-pyrifera_M_contig123341:169..172Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123341 170..172 +
1692277552.5598798-UTR-M-pyrifera_M_contig123341:169..1721692277552.5598798-UTR-M-pyrifera_M_contig123341:169..172Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123341 170..172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.9542403-CDS-M-pyrifera_M_contig123341:172..4901622815751.9542403-CDS-M-pyrifera_M_contig123341:172..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123341 173..490 +
1692277552.587183-CDS-M-pyrifera_M_contig123341:172..4901692277552.587183-CDS-M-pyrifera_M_contig123341:172..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123341 173..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123341.4779.1prot_M-pyrifera_M_contig123341.4779.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123341 173..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123341.4779.1

>prot_M-pyrifera_M_contig123341.4779.1 ID=prot_M-pyrifera_M_contig123341.4779.1|Name=mRNA_M-pyrifera_M_contig123341.4779.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MQQQRAALPVAKLRAQLLAAVFENQMLVVVGETGSGKTTQIPQFLAEAGH
TAQGRVGVTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSAETQ
IKYMTD
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mRNA from alignment at M-pyrifera_M_contig123341:170..490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123341.4779.1 ID=mRNA_M-pyrifera_M_contig123341.4779.1|Name=mRNA_M-pyrifera_M_contig123341.4779.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig123341:170..490+ (Macrocystis pyrifera P11B4 male)
ACCATGCAGCAGCAGCGCGCCGCCCTGCCCGTGGCCAAGCTGCGCGCCCA
GCTGCTGGCCGCCGTCTTCGAGAACCAGATGCTGGTGGTGGTGGGCGAGA
CGGGCTCGGGCAAGACGACGCAGATCCCGCAGTTCCTCGCCGAGGCGGGC
CACACGGCGCAGGGCCGCGTGGGCGTCACGCAGCCGCGCCGCGTGGCCGC
CATGTCGGTGGCCAAGCGCGTGGCCGAGGAGTTCGGCTGCAGGCTGGGCC
AGGAGGTGGGCTACACCATCCGCTTCGAGGACTGCACCAGCGCAGAGACG
CAGATCAAGTACATGACGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123341:170..490+

>mRNA_M-pyrifera_M_contig123341.4779.1 ID=mRNA_M-pyrifera_M_contig123341.4779.1|Name=mRNA_M-pyrifera_M_contig123341.4779.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig123341:170..490+ (Macrocystis pyrifera P11B4 male)
ATGCAGCAGCAGCGCGCCGCCCTGCCCGTGGCCAAGCTGCGCGCCCAGCT
GCTGGCCGCCGTCTTCGAGAACCAGATGCTGGTGGTGGTGGGCGAGACGG
GCTCGGGCAAGACGACGCAGATCCCGCAGTTCCTCGCCGAGGCGGGCCAC
ACGGCGCAGGGCCGCGTGGGCGTCACGCAGCCGCGCCGCGTGGCCGCCAT
GTCGGTGGCCAAGCGCGTGGCCGAGGAGTTCGGCTGCAGGCTGGGCCAGG
AGGTGGGCTACACCATCCGCTTCGAGGACTGCACCAGCGCAGAGACGCAG
ATCAAGTACATGACGGACATGCAGCAGCAGCGCGCCGCCCTGCCCGTGGC
CAAGCTGCGCGCCCAGCTGCTGGCCGCCGTCTTCGAGAACCAGATGCTGG
TGGTGGTGGGCGAGACGGGCTCGGGCAAGACGACGCAGATCCCGCAGTTC
CTCGCCGAGGCGGGCCACACGGCGCAGGGCCGCGTGGGCGTCACGCAGCC
GCGCCGCGTGGCCGCCATGTCGGTGGCCAAGCGCGTGGCCGAGGAGTTCG
GCTGCAGGCTGGGCCAGGAGGTGGGCTACACCATCCGCTTCGAGGACTGC
ACCAGCGCAGAGACGCAGATCAAGTACATGACGGAC
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