mRNA_M-pyrifera_M_contig1233.4778.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1233.4778.1
Unique NamemRNA_M-pyrifera_M_contig1233.4778.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1233.4778.1 vs. uniprot
Match: D8LQ47_ECTSI (APPLE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ47_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.110e-9
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 CCQECRKVSSCTHFTFDYKSGNCYLKSGKGTAIPHKGLVSGTVVVP 138
            CCQEC +   C+HFTFDY SG CYLK G+G      GLVSG   VP
Sbjct:  405 CCQECHQADGCSHFTFDYSSGVCYLKVGQGVQNFKVGLVSGMTPVP 450
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1233.4778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ47_ECTSI1.110e-958.70APPLE domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1233contigM-pyrifera_M_contig1233:13939..14085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D8LQ47
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2D47D@1,2SU61@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.8999941-CDS-M-pyrifera_M_contig1233:13938..140851622815751.8999941-CDS-M-pyrifera_M_contig1233:13938..14085Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 13939..14085 -
1692277552.547829-CDS-M-pyrifera_M_contig1233:13938..140851692277552.547829-CDS-M-pyrifera_M_contig1233:13938..14085Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 13939..14085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1233.4778.1prot_M-pyrifera_M_contig1233.4778.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1233 13939..14085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1233.4778.1

>prot_M-pyrifera_M_contig1233.4778.1 ID=prot_M-pyrifera_M_contig1233.4778.1|Name=mRNA_M-pyrifera_M_contig1233.4778.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
CCQECRKVSSCTHFTFDYKSGNCYLKSGKGTAIPHKGLVSGTVVVPSS*
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mRNA from alignment at M-pyrifera_M_contig1233:13939..14085-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1233.4778.1 ID=mRNA_M-pyrifera_M_contig1233.4778.1|Name=mRNA_M-pyrifera_M_contig1233.4778.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig1233:13939..14085- (Macrocystis pyrifera P11B4 male)
TGCTGCCAGGAGTGCCGCAAGGTGTCGAGCTGCACGCATTTCACATTCGA
CTATAAATCGGGGAACTGCTACCTCAAGTCGGGAAAAGGCACGGCGATCC
CCCATAAGGGGCTAGTATCGGGAACCGTGGTGGTGCCTTCATCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1233:13939..14085-

>mRNA_M-pyrifera_M_contig1233.4778.1 ID=mRNA_M-pyrifera_M_contig1233.4778.1|Name=mRNA_M-pyrifera_M_contig1233.4778.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig1233:13939..14085- (Macrocystis pyrifera P11B4 male)
TGCTGCCAGGAGTGCCGCAAGGTGTCGAGCTGCACGCATTTCACATTCGA
CTATAAATCGGGGAACTGCTACCTCAAGTCGGGAAAAGGCACGGCGATCC
CCCATAAGGGGCTAGTATCGGGAACCGTGGTGGTGCCTTCATCTTAATGC
TGCCAGGAGTGCCGCAAGGTGTCGAGCTGCACGCATTTCACATTCGACTA
TAAATCGGGGAACTGCTACCTCAAGTCGGGAAAAGGCACGGCGATCCCCC
ATAAGGGGCTAGTATCGGGAACCGTGGTGGTGCCTTCATCTTAA
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