mRNA_M-pyrifera_M_contig12323.4767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12323.4767.1
Unique NamemRNA_M-pyrifera_M_contig12323.4767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12323.4767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12323contigM-pyrifera_M_contig12323:660..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog2880.D7FJR5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF3082)
EggNOG OGs2E92Q@1,2SFGP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size290
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12323.4767.1prot_M-pyrifera_M_contig12323.4767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12323 660..1080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.3830824-CDS-M-pyrifera_M_contig12323:659..8411622815751.3830824-CDS-M-pyrifera_M_contig12323:659..841Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12323 660..841 -
1692277552.3163836-CDS-M-pyrifera_M_contig12323:659..8411692277552.3163836-CDS-M-pyrifera_M_contig12323:659..841Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12323 660..841 -
1622815751.3944364-CDS-M-pyrifera_M_contig12323:1007..10801622815751.3944364-CDS-M-pyrifera_M_contig12323:1007..1080Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12323 1008..1080 -
1692277552.330026-CDS-M-pyrifera_M_contig12323:1007..10801692277552.330026-CDS-M-pyrifera_M_contig12323:1007..1080Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12323 1008..1080 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.4135516-UTR-M-pyrifera_M_contig12323:1080..11151622815751.4135516-UTR-M-pyrifera_M_contig12323:1080..1115Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12323 1081..1115 -
1692277552.3458111-UTR-M-pyrifera_M_contig12323:1080..11151692277552.3458111-UTR-M-pyrifera_M_contig12323:1080..1115Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12323 1081..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12323.4767.1

>prot_M-pyrifera_M_contig12323.4767.1 ID=prot_M-pyrifera_M_contig12323.4767.1|Name=mRNA_M-pyrifera_M_contig12323.4767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MSGLRAIIGILIVFRCREAHSFVPVGLNVARCATGMNRQSWATPRSGVLP
LTASPPDGLGETKRVGFVTSRTEDEVYTLGLTLI*
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mRNA from alignment at M-pyrifera_M_contig12323:660..1115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12323.4767.1 ID=mRNA_M-pyrifera_M_contig12323.4767.1|Name=mRNA_M-pyrifera_M_contig12323.4767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig12323:660..1115- (Macrocystis pyrifera P11B4 male)
GGTTGCTTGCTTCTTAGGCGTGCTGGTACTTGAGGATGAGTGGCCTACGA
GCCATCATCGGCATCCTCATTGTATTTAGGTGCCGGGAGGCGCACTCGTT
TGTCCCAGGTGCGTGATACTTTCCCGAACGATGGCAAGTATGTGCAGCTT
CTATTCTTACGCACCTGGTTCTACATGCTAGGGTTGATATGGGCATCATG
TTCAATGCGCACAGGTTCACCTCTCATGAGTCTCCTCTCTTCCCTCCTCC
GCCCCCCTCTCGCTCTTGCCTCAGTTGGACTTAATGTCGCAAGATGTGCG
ACGGGAATGAATCGCCAGTCTTGGGCCACACCGCGCAGTGGTGTTCTGCC
ACTTACGGCTAGCCCTCCAGATGGCTTGGGCGAGACCAAACGTGTGGGGT
TCGTCACGTCACGCACAGAAGACGAGGTATATACGCTTGGACTCACCCTG
ATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12323:660..1115-

>mRNA_M-pyrifera_M_contig12323.4767.1 ID=mRNA_M-pyrifera_M_contig12323.4767.1|Name=mRNA_M-pyrifera_M_contig12323.4767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig12323:660..1115- (Macrocystis pyrifera P11B4 male)
ATGAGTGGCCTACGAGCCATCATCGGCATCCTCATTGTATTTAGGTGCCG
GGAGGCGCACTCGTTTGTCCCAGATGAGTGGCCTACGAGCCATCATCGGC
ATCCTCATTGTATTTAGGTGCCGGGAGGCGCACTCGTTTGTCCCAGTTGG
ACTTAATGTCGCAAGATGTGCGACGGGAATGAATCGCCAGTCTTGGGCCA
CACCGCGCAGTGGTGTTCTGCCACTTACGGCTAGCCCTCCAGATGGCTTG
GGCGAGACCAAACGTGTGGGGTTCGTCACGTCACGCACAGAAGACGAGGT
ATATACGCTTGGACTCACCCTGATCTGATTGGACTTAATGTCGCAAGATG
TGCGACGGGAATGAATCGCCAGTCTTGGGCCACACCGCGCAGTGGTGTTC
TGCCACTTACGGCTAGCCCTCCAGATGGCTTGGGCGAGACCAAACGTGTG
GGGTTCGTCACGTCACGCACAGAAGACGAGGTATATACGCTTGGACTCAC
CCTGATCTGA
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