mRNA_M-pyrifera_M_contig123213.4763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123213.4763.1
Unique NamemRNA_M-pyrifera_M_contig123213.4763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A7Y8LGZ3_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7Y8LGZ3_9BACT)

HSP 1 Score: 197 bits (501), Expect = 9.030e-60
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALSSEK 387
            LCVEFFL  D +L +NE+APRPHNSGH T+DAC+T QFEQQLRA+CGLPLGST  LRPAAMANLLGD W HG P+W+AAC  P V LHLYGK E RPGRKMGH+TALA++  EAAR+A  AREAL++++
Sbjct:  252 LCVEFFLAKDGRLFINELAPRPHNSGHFTFDACLTSQFEQQLRAVCGLPLGSTELLRPAAMANLLGDLWDHGEPDWSAACAFPEVKLHLYGKLEARPGRKMGHLTALANSGGEAARIAAAAREALTAKQ 380
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A7V3XDI3_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XDI3_9BACT)

HSP 1 Score: 197 bits (500), Expect = 1.280e-59
Identity = 94/126 (74.60%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALS 378
            LCVEFFLT + +LL+NE+APRPHNSGH T DAC+TGQFEQQLRA+CGLPLG+T  LRPAAMANLLGD WQ+G PNW+AAC  P V LHLYGK+ PRPGRKMGH+TALA  AEEA+RL   AR AL+
Sbjct:  252 LCVEFFLTREGKLLINELAPRPHNSGHFTVDACITGQFEQQLRAVCGLPLGATEQLRPAAMANLLGDLWQNGEPNWSAACAFPEVKLHLYGKRIPRPGRKMGHLTALAAGAEEASRLVRAARSALA 377
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A838MXD8_9BACT (5-(Carboxyamino)imidazole ribonucleotide synthase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A838MXD8_9BACT)

HSP 1 Score: 192 bits (489), Expect = 2.470e-59
Identity = 92/129 (71.32%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALSSEK 387
            LCVEFFLT D +L VNE+APRPHNSGH T DAC+T QFEQQLRA+CGLPLG T  LRPAAMANLLGD WQ G P+W AAC+VP V LHLYGK+  RPGRKMGH+TALA T EEA +L   AR AL+  +
Sbjct:  139 LCVEFFLTRDGKLYVNELAPRPHNSGHFTIDACVTSQFEQQLRAVCGLPLGPTEQLRPAAMANLLGDLWQQGNPDWRAACSVPNVKLHLYGKRAARPGRKMGHLTALAPTTEEARQLVYAARAALTKRR 267
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A3D0P5T5_9BACT (5-(Carboxyamino)imidazole ribonucleotide synthase (Fragment) n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A3D0P5T5_9BACT)

HSP 1 Score: 189 bits (481), Expect = 4.730e-59
Identity = 90/125 (72.00%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREAL 375
            +CVEFFLT   +LLVNEIAPRPHNSGHLT+  C+T QFEQQ+RA+CGLPLGS+ +LRPAAMANLLGD W  G PNWAAA  +PGV LHLYGK EPRPGRKMGH+TA++D+   A   AVQAR AL
Sbjct:   70 MCVEFFLTGSGKLLVNEIAPRPHNSGHLTFGPCVTSQFEQQVRAVCGLPLGSSEFLRPAAMANLLGDVWSAGEPNWAAALAIPGVSLHLYGKAEPRPGRKMGHVTAVSDSVNGALTRAVQARVAL 194
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A4Q3JC03_9DELT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q3JC03_9DELT)

HSP 1 Score: 194 bits (494), Expect = 1.090e-58
Identity = 89/125 (71.20%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREAL 375
            LCVEFF+T D +LL+NE+APRPHNSGH ++DAC+T QFEQQLRA+CGLPLG+T  LRPA M NLLGD W HG P W AAC  PGV LHLYGK +PRPGRKMGH+TALAD+ +EA   A+ AREAL
Sbjct:  257 LCVEFFVTRDGRLLINELAPRPHNSGHFSFDACITSQFEQQLRAVCGLPLGATTQLRPAVMVNLLGDLWAHGEPRWEAACRHPGVKLHLYGKLDPRPGRKMGHLTALADSVDEALAAALAAREAL 381
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A2V8SID8_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SID8_9BACT)

HSP 1 Score: 194 bits (492), Expect = 1.970e-58
Identity = 90/125 (72.00%), Postives = 104/125 (83.20%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREAL 375
            LCVEFFLT D +LLVNE+APRPHNSGHLT+DAC+T QFEQQLRA+CGLPLGST + RPAAMANLLGD W+ G P+W  A  +PGV LHLYGK +PRPGRKMGHITA+AD+A++A   A  AR  L
Sbjct:  252 LCVEFFLTKDGKLLVNELAPRPHNSGHLTFDACVTSQFEQQLRAVCGLPLGSTEFYRPAAMANLLGDVWESGEPHWDRALAIPGVKLHLYGKADPRPGRKMGHITAMADSAKQAVEFATDARSML 376
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A2V8SC78_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SC78_9BACT)

HSP 1 Score: 193 bits (491), Expect = 2.790e-58
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALSS 381
            LCVEFFLT DE+L VNEIAPRPHNSGH T DAC+T QFEQQ+RA+CGLPLG+T  LRPAAMANLLGD WQ G P+W  AC  P V LHLYGK E RPGRKMGH+TALADT  EA R+   AR  L+S
Sbjct:  252 LCVEFFLTQDEKLFVNEIAPRPHNSGHFTIDACVTSQFEQQVRAVCGLPLGATEQLRPAAMANLLGDLWQQGAPDWLRACAAPNVKLHLYGKHEARPGRKMGHLTALADTTAEALRIVRAARAVLTS 378
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A7Y4TR92_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4TR92_9BACT)

HSP 1 Score: 193 bits (491), Expect = 3.160e-58
Identity = 92/126 (73.02%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALS 378
            LC+EFFLT DE+LLVNE+APRPHNSGHLT+DAC+T QFEQQ+RA+CGLPLGST + RPAAMANLLGD WQ G P+WAAA   P V LHLYGK E +PGRKMGH+TA+A+TAE AA L  +AR  LS
Sbjct:  252 LCIEFFLTRDEKLLVNELAPRPHNSGHLTFDACITSQFEQQVRAVCGLPLGSTEFYRPAAMANLLGDLWQSGEPDWAAALADPHVKLHLYGKAEAKPGRKMGHLTAMAETAERAADLVREARTRLS 377
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A1Q8AQG6_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q8AQG6_9BACT)

HSP 1 Score: 192 bits (489), Expect = 5.420e-58
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALS 378
            LCVEFF+T D +L+VNE+APRPHNSGHLT+DAC T QFEQQLRAICGLPLGST  L+PAAMANLLGD W+ G P+WAAA   P V LHLYGK  PRPGRKMGHITAL+ T EEA  L ++AREAL+
Sbjct:  251 LCVEFFVTRDGRLVVNELAPRPHNSGHLTFDACRTSQFEQQLRAICGLPLGSTEQLQPAAMANLLGDLWEAGEPDWAAALRFPTVKLHLYGKVNPRPGRKMGHITALSATREEAKSLVIRAREALT 376
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BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Match: A0A355FA41_9BACT (N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A355FA41_9BACT)

HSP 1 Score: 192 bits (489), Expect = 5.710e-58
Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:    1 LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPLGSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRKMGHITALADTAEEAARLAVQAREALS 378
            LCVE FLT    LL+NE+APRPHNSGHLT+DAC+T QFEQQLRAICGLPLGST  LRPAAMANLLGD WQ G P+WAAAC  P V LHLYGK  PRPGRKMGH+TALA    EA R+ + AR+ALS
Sbjct:  253 LCVEMFLTRSGSLLINELAPRPHNSGHLTFDACVTSQFEQQLRAICGLPLGSTELLRPAAMANLLGDLWQDGEPDWAAACRHPAVKLHLYGKAAPRPGRKMGHLTALAADPAEARRIVLAARKALS 378
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123213.4763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y8LGZ3_9BACT9.030e-6071.32N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A7V3XDI3_9BACT1.280e-5974.60N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A838MXD8_9BACT2.470e-5971.325-(Carboxyamino)imidazole ribonucleotide synthase ... [more]
A0A3D0P5T5_9BACT4.730e-5972.005-(Carboxyamino)imidazole ribonucleotide synthase ... [more]
A0A4Q3JC03_9DELT1.090e-5871.20N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A2V8SID8_9BACT1.970e-5872.00N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A2V8SC78_9BACT2.790e-5872.44N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A7Y4TR92_9BACT3.160e-5873.02N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A1Q8AQG6_9BACT5.420e-5873.81N5-carboxyaminoimidazole ribonucleotide synthase n... [more]
A0A355FA41_9BACT5.710e-5873.81N5-carboxyaminoimidazole ribonucleotide synthase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123213contigM-pyrifera_M_contig123213:2..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score184.1
Seed ortholog evalue4.1e-44
Seed eggNOG ortholog234267.Acid_5043
Preferred namepurK
KEGG rclassRC01927
KEGG koko:K01589
KEGG ReactionR07404
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004638,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016829,GO:0016830,GO:0016831,GO:0016874,GO:0016879,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034028,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
EggNOG OGs3Y3RI@57723,COG0026@1,COG0026@2
EC6.3.4.18
COG Functional cat.F
BiGG ReactioniECUMN_1333.ECUMN_0562,iYL1228.KPN_00477
Best tax levelAcidobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.1977482-CDS-M-pyrifera_M_contig123213:1..3911622815751.1977482-CDS-M-pyrifera_M_contig123213:1..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123213 2..391 +
1692277552.244875-CDS-M-pyrifera_M_contig123213:1..3911692277552.244875-CDS-M-pyrifera_M_contig123213:1..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123213 2..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123213.4763.1prot_M-pyrifera_M_contig123213.4763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123213 2..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123213.4763.1

>prot_M-pyrifera_M_contig123213.4763.1 ID=prot_M-pyrifera_M_contig123213.4763.1|Name=mRNA_M-pyrifera_M_contig123213.4763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
LCVEFFLTTDEQLLVNEIAPRPHNSGHLTWDACMTGQFEQQLRAICGLPL
GSTAYLRPAAMANLLGDQWQHGTPNWAAACNVPGVHLHLYGKQEPRPGRK
MGHITALADTAEEAARLAVQAREALSSEK*
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mRNA from alignment at M-pyrifera_M_contig123213:2..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123213.4763.1 ID=mRNA_M-pyrifera_M_contig123213.4763.1|Name=mRNA_M-pyrifera_M_contig123213.4763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig123213:2..391+ (Macrocystis pyrifera P11B4 male)
CTCTGCGTCGAGTTCTTCCTGACCACCGACGAACAACTGCTGGTGAACGA
GATTGCCCCCCGCCCCCACAACTCGGGTCACCTCACTTGGGACGCCTGCA
TGACCGGCCAGTTCGAGCAACAGCTGCGTGCCATCTGCGGTTTGCCGTTA
GGGTCGACCGCCTACCTTCGCCCCGCCGCCATGGCCAATCTCTTGGGCGA
TCAATGGCAACACGGCACCCCGAACTGGGCCGCTGCCTGCAACGTACCCG
GCGTGCATCTCCACCTCTACGGAAAACAAGAACCACGCCCCGGAAGAAAG
ATGGGGCACATCACCGCACTGGCAGATACGGCGGAAGAGGCGGCACGATT
GGCGGTGCAAGCCCGTGAGGCGTTGAGCTCGGAGAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123213:2..391+

>mRNA_M-pyrifera_M_contig123213.4763.1 ID=mRNA_M-pyrifera_M_contig123213.4763.1|Name=mRNA_M-pyrifera_M_contig123213.4763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig123213:2..391+ (Macrocystis pyrifera P11B4 male)
CTCTGCGTCGAGTTCTTCCTGACCACCGACGAACAACTGCTGGTGAACGA
GATTGCCCCCCGCCCCCACAACTCGGGTCACCTCACTTGGGACGCCTGCA
TGACCGGCCAGTTCGAGCAACAGCTGCGTGCCATCTGCGGTTTGCCGTTA
GGGTCGACCGCCTACCTTCGCCCCGCCGCCATGGCCAATCTCTTGGGCGA
TCAATGGCAACACGGCACCCCGAACTGGGCCGCTGCCTGCAACGTACCCG
GCGTGCATCTCCACCTCTACGGAAAACAAGAACCACGCCCCGGAAGAAAG
ATGGGGCACATCACCGCACTGGCAGATACGGCGGAAGAGGCGGCACGATT
GGCGGTGCAAGCCCGTGAGGCGTTGAGCTCGGAGAAATAACTCTGCGTCG
AGTTCTTCCTGACCACCGACGAACAACTGCTGGTGAACGAGATTGCCCCC
CGCCCCCACAACTCGGGTCACCTCACTTGGGACGCCTGCATGACCGGCCA
GTTCGAGCAACAGCTGCGTGCCATCTGCGGTTTGCCGTTAGGGTCGACCG
CCTACCTTCGCCCCGCCGCCATGGCCAATCTCTTGGGCGATCAATGGCAA
CACGGCACCCCGAACTGGGCCGCTGCCTGCAACGTACCCGGCGTGCATCT
CCACCTCTACGGAAAACAAGAACCACGCCCCGGAAGAAAGATGGGGCACA
TCACCGCACTGGCAGATACGGCGGAAGAGGCGGCACGATTGGCGGTGCAA
GCCCGTGAGGCGTTGAGCTCGGAGAAATAA
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