mRNA_M-pyrifera_M_contig123177.4757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123177.4757.1
Unique NamemRNA_M-pyrifera_M_contig123177.4757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A7Y5C9U2_9BACT (PAS domain S-box protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C9U2_9BACT)

HSP 1 Score: 130 bits (328), Expect = 3.540e-32
Identity = 91/290 (31.38%), Postives = 119/290 (41.03%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRD-------------MTVEFEA-------------------------------------------------------------------------------------------------------------RKEQERLLGELKERNKKITCLYSVGELIREQEVETDLFRSVTQVVRPACTFPEITRARIIFDGQVYEELSVVETPW 504
            AA R+FG+   E++G NV +L P      H  YIA+Y ++GV++IIGIGREV  + K+G   P+HLSISEV +DG R F+G+ RD             +T  +EA                                                                                                              +EQ+RLLGEL ERNKKITCLYSVG  I   + + DLF ++ Q++RPAC  PE  RAR+ +DGQ Y E  V ETPW
Sbjct:   46 AALRLFGYEMDEVIGRNVSLLMPEPYRSAHSDYIASYRQSGVKKIIGIGREVAGRRKDGAVFPMHLSISEVTVDGRRLFTGITRDISREKKAEESLRALTFRYEAILAAAPDLIVEVDRNRKHVWMNQAALNFYGDDAIGREPADYFYGPQDTYETVSPLLEGLDETVYVESLQRRRDGEPRLLAWWCRCLRDSEGKVIGALSTARDITNRKRNEQEQKRLLGELTERNKKITCLYSVGRAIAAAKSDQDLFEALVQLIRPACYKPETARARVTYDGQQYAEPGVQETPW 335          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A7J0BLE1_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio subterraneus TaxID=2718620 RepID=A0A7J0BLE1_9DELT)

HSP 1 Score: 109 bits (272), Expect = 1.530e-24
Identity = 63/136 (46.32%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQERLLGELKERNKKITCLYSVGE-LIREQEVETDLFRSVTQ 405
            AA  MFG+T++ELLGENVR++TPP +  HHD YI  Y++ G+ RIIGIGREV A  K+G  +P+ LSISE+++   RYF+ ++RD++     RK  E+ L EL E  +      S+ E LI   E++  L  SVT+
Sbjct:  286 AACTMFGYTQKELLGENVRLITPPEMRDHHDEYIRRYIKTGIPRIIGIGREVEAVRKDGVRMPIDLSISEIKVGAKRYFTAIIRDISE----RKFWEQQLMELNESLR--VKQRSINEALISAAEIQRSLLPSVTE 415          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A7C4XZX2_9HYPH (Histidine kinase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XZX2_9HYPH)

HSP 1 Score: 107 bits (266), Expect = 7.720e-24
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMT----VEFEARKEQERLLGE 306
            A + +FG++  EL+G+NV +L P      HDGYIANYL +GV+RIIGIGREV  Q K+G   PVHLS+SE   DG RYF+G++ D+T    VE EA +E ER L +
Sbjct:   44 ATESLFGYSASELIGQNVSILMPEPYRSAHDGYIANYLASGVKRIIGIGREVSGQRKDGTTFPVHLSVSEFEADGRRYFTGIIHDLTDRRHVE-EALRESERRLAQ 148          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A345R9D3_9RHOB (Uncharacterized protein n=1 Tax=Sulfitobacter sp. JL08 TaxID=2070369 RepID=A0A345R9D3_9RHOB)

HSP 1 Score: 107 bits (267), Expect = 8.420e-24
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   10 RMFGFTRRELLGENVRMLTP-PHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQER 294
            RM G+TR E++G NV ML P PH S H DGYI++YLE G  +IIG GR+V+A+HK+G  +PVHL ++EV IDG R F G++RD+T E E+R+  E+
Sbjct: 1011 RMLGYTRSEMVGRNVNMLMPEPHHSAH-DGYISSYLETGEAKIIGTGRDVVARHKSGKPVPVHLKVAEVTIDGERQFIGIIRDLTEETESRRRLEQ 1105          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: UPI0009FC3273 (PAS domain S-box protein n=1 Tax=Woodsholea maritima TaxID=240237 RepID=UPI0009FC3273)

HSP 1 Score: 106 bits (265), Expect = 1.460e-23
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQERLLGEL 309
            A + +FG+   E+LG+NV+MLTP  I  HHD YI NYL  G  ++IGIGRE  AQHK+G   P+ L+ISE+   G R+F G +RD+T    A KE+E  + +L
Sbjct:  467 ATKTLFGYDPHEVLGQNVKMLTPEGIREHHDDYITNYLNTGKAKVIGIGRETRAQHKSGSTFPIDLTISEIFTHGERFFVGTVRDLTERKNAEKERETFIAQL 569          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A3N5N5S9_9HYPH (Histidine kinase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5N5S9_9HYPH)

HSP 1 Score: 105 bits (261), Expect = 3.640e-23
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMT----VEFEARKEQERLLGE 306
            A +R+FG+   EL+G+NV+ML P      HDGY+ NYL  GV++IIGIGREV  + K+G   P+HLS+SE   DG RYF+GM+ D++    VE EA +E ER L +
Sbjct:   44 ATERLFGYGATELIGQNVKMLMPEPYKAEHDGYVTNYLGTGVKKIIGIGREVSGRRKDGTTFPLHLSVSEFSADGRRYFTGMIHDLSDRRHVE-EALRESERRLAQ 148          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: J9DT82_9RHOB (Histidine kinase n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J9DT82_9RHOB)

HSP 1 Score: 103 bits (257), Expect = 6.370e-23
Identity = 67/168 (39.88%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQERLLGELKE---RNKKITCLYSVGE-LIREQEVETDLFRSVTQVVRPAC-----TFPEITRARIIFDGQVYE 477
            A +R+FG+T  E+LG NV+ L P   SR HD Y+ANY+E G R+IIGIGREV+AQH++G  IPVHLS+ E      R F G+LRD+     AR E +  L +L+    R  +++ +  +G  L  E            Q V  AC     T P  T+   I +  V+E
Sbjct:   58 ACERLFGYTAVEMLGRNVQTLMPNEYSRAHDRYVANYVETGQRKIIGIGREVLAQHRDGTIIPVHLSVGEAVTSAGRQFIGILRDLR----ARNESDERLNQLQANLVRMARVSAIDEMGAALAHELNQPLTALMLYLQAVERACAKQGATGPMPTQVLGILEKAVHE 221          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A1F3ZLS1_9PROT (Histidine kinase n=1 Tax=Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 TaxID=1797480 RepID=A0A1F3ZLS1_9PROT)

HSP 1 Score: 102 bits (255), Expect = 9.490e-23
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQERLLGELKERN 321
            AA+ +FG+   E+LG+NV +L P      HDGY+  YL  G +RIIGIGREV+AQ K+G   P+ L++SE+R+ G R F+G++ D+T   +A+  QE L+ EL+  N
Sbjct:   52 AAEHLFGYAPSEVLGKNVSLLMPSPYHEEHDGYLQRYLATGEKRIIGIGREVVAQRKDGTAFPIELAVSEMRVGGRRLFTGLVHDITQRKQAQARQEELIRELEGAN 158          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A3N2QMH8_9GAMM (EAL domain-containing protein n=2 Tax=Marinobacter TaxID=2742 RepID=A0A3N2QMH8_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 1.660e-22
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQERLLGELKERNKKI 330
            AA+R+FG+ R E++G+NV+ L P +++RHHDGY+ NYL+    RIIG+GREV  +HK+G   P+HLS+ E   +GHR F G+  D+T    +     R LGE +ER + I
Sbjct:   36 AAERLFGYRRDEVIGQNVKCLMPEYVARHHDGYLQNYLQGCPARIIGVGREVEGRHKDGSTFPLHLSVGEALHEGHRNFIGICHDLT----SYNAVLRQLGEAEERYRDI 141          
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Match: A0A0L0SRK2_ALLM3 (PAS domain S-box protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SRK2_ALLM3)

HSP 1 Score: 103 bits (257), Expect = 1.780e-22
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 AAQRMFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMAQHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMT----VEFEARKEQERLLGELKERNKKITCLYSVGELIREQEVETDLFRSVTQVVRPACTFPEITRARI 453
            AA++MFG++  E+LG+N++MLTP H++  HD ++ NYL  GV+++IGIGR    + K+G   P+HLS+SEV+ +    F+G++RD+T    +E  AR EQ R   E++              LI +   E    RS+ Q + PA    ++ R  +
Sbjct:  650 AAEKMFGYSADEVLGKNIKMLTPDHVAVQHDQFLLNYLTTGVKKVIGIGRTAKGRKKDGSLFPIHLSVSEVKEEEFHLFTGIVRDLTEQNAIEEAARAEQARKQAEME-------------SLIAQLGTERTKSRSLIQEILPASIAEQLMRGEV 791          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123177.4757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5C9U2_9BACT3.540e-3231.38PAS domain S-box protein n=1 Tax=Candidatus Hydrog... [more]
A0A7J0BLE1_9DELT1.530e-2446.32Uncharacterized protein n=1 Tax=Desulfovibrio subt... [more]
A0A7C4XZX2_9HYPH7.720e-2452.83Histidine kinase n=1 Tax=Hyphomicrobiales bacteriu... [more]
A0A345R9D3_9RHOB8.420e-2455.21Uncharacterized protein n=1 Tax=Sulfitobacter sp. ... [more]
UPI0009FC32731.460e-2348.54PAS domain S-box protein n=1 Tax=Woodsholea mariti... [more]
A0A3N5N5S9_9HYPH3.640e-2350.00Histidine kinase n=1 Tax=Hyphomicrobiaceae bacteri... [more]
J9DT82_9RHOB6.370e-2339.88Histidine kinase n=1 Tax=Rhodovulum sp. PH10 TaxID... [more]
A0A1F3ZLS1_9PROT9.490e-2345.79Histidine kinase n=1 Tax=Betaproteobacteria bacter... [more]
A0A3N2QMH8_9GAMM1.660e-2246.36EAL domain-containing protein n=2 Tax=Marinobacter... [more]
A0A0L0SRK2_ALLM31.780e-2236.13PAS domain S-box protein n=2 Tax=Allomyces macrogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123177contigM-pyrifera_M_contig123177:2..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score108.6
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog1123503.KB908056_gene1809
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
EggNOG OGs1NSQ1@1224,2KIDE@204458,2TSPY@28211,COG4251@1,COG4251@2
COG Functional cat.T
Best tax levelCaulobacterales
Best eggNOG OGNA|NA|NA
Exons1
Model size522
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.8604014-UTR-M-pyrifera_M_contig123177:1..131622815750.8604014-UTR-M-pyrifera_M_contig123177:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123177 2..13 +
1692277552.041927-UTR-M-pyrifera_M_contig123177:1..131692277552.041927-UTR-M-pyrifera_M_contig123177:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123177 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.8698697-CDS-M-pyrifera_M_contig123177:13..5231622815750.8698697-CDS-M-pyrifera_M_contig123177:13..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123177 14..523 +
1692277552.0544906-CDS-M-pyrifera_M_contig123177:13..5231692277552.0544906-CDS-M-pyrifera_M_contig123177:13..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123177 14..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123177.4757.1prot_M-pyrifera_M_contig123177.4757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123177 14..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123177.4757.1

>prot_M-pyrifera_M_contig123177.4757.1 ID=prot_M-pyrifera_M_contig123177.4757.1|Name=mRNA_M-pyrifera_M_contig123177.4757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MFGFTRRELLGENVRMLTPPHISRHHDGYIANYLENGVRRIIGIGREVMA
QHKNGDEIPVHLSISEVRIDGHRYFSGMLRDMTVEFEARKEQERLLGELK
ERNKKITCLYSVGELIREQEVETDLFRSVTQVVRPACTFPEITRARIIFD
GQVYEELSVVETPWVCSAPI
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mRNA from alignment at M-pyrifera_M_contig123177:2..523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123177.4757.1 ID=mRNA_M-pyrifera_M_contig123177.4757.1|Name=mRNA_M-pyrifera_M_contig123177.4757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig123177:2..523+ (Macrocystis pyrifera P11B4 male)
GCAGCGCAGCGTATGTTTGGATTCACCCGTCGTGAATTGCTGGGTGAGAA CGTCCGCATGCTGACGCCGCCCCATATTTCCCGCCATCATGATGGCTATA TTGCAAACTACCTCGAGAATGGCGTCCGACGGATCATCGGCATCGGGCGC GAAGTAATGGCCCAACACAAAAACGGTGATGAAATACCGGTTCATCTATC CATCAGCGAAGTGCGCATTGATGGTCACCGCTACTTTTCCGGCATGCTTC GGGATATGACCGTAGAATTTGAGGCCCGAAAGGAACAAGAGAGGCTCCTG GGCGAACTCAAAGAGCGCAACAAGAAAATTACCTGTCTCTACAGCGTTGG GGAACTGATACGCGAGCAGGAAGTAGAAACGGACCTTTTTCGCTCGGTCA CCCAGGTGGTGCGACCGGCCTGCACGTTTCCGGAGATTACCCGAGCACGC ATCATCTTCGACGGACAGGTCTATGAAGAATTAAGTGTGGTCGAGACGCC TTGGGTGTGCAGCGCCCCTATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123177:2..523+

>mRNA_M-pyrifera_M_contig123177.4757.1 ID=mRNA_M-pyrifera_M_contig123177.4757.1|Name=mRNA_M-pyrifera_M_contig123177.4757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig123177:2..523+ (Macrocystis pyrifera P11B4 male)
ATGTTTGGATTCACCCGTCGTGAATTGCTGGGTGAGAACGTCCGCATGCT
GACGCCGCCCCATATTTCCCGCCATCATGATGGCTATATTGCAAACTACC
TCGAGAATGGCGTCCGACGGATCATCGGCATCGGGCGCGAAGTAATGGCC
CAACACAAAAACGGTGATGAAATACCGGTTCATCTATCCATCAGCGAAGT
GCGCATTGATGGTCACCGCTACTTTTCCGGCATGCTTCGGGATATGACCG
TAGAATTTGAGGCCCGAAAGGAACAAGAGAGGCTCCTGGGCGAACTCAAA
GAGCGCAACAAGAAAATTACCTGTCTCTACAGCGTTGGGGAACTGATACG
CGAGCAGGAAGTAGAAACGGACCTTTTTCGCTCGGTCACCCAGGTGGTGC
GACCGGCCTGCACGTTTCCGGAGATTACCCGAGCACGCATCATCTTCGAC
GGACAGGTCTATGAAGAATTAAGTGTGGTCGAGACGCCTTGGGTGTGCAG
CGCCCCTATCATGTTTGGATTCACCCGTCGTGAATTGCTGGGTGAGAACG
TCCGCATGCTGACGCCGCCCCATATTTCCCGCCATCATGATGGCTATATT
GCAAACTACCTCGAGAATGGCGTCCGACGGATCATCGGCATCGGGCGCGA
AGTAATGGCCCAACACAAAAACGGTGATGAAATACCGGTTCATCTATCCA
TCAGCGAAGTGCGCATTGATGGTCACCGCTACTTTTCCGGCATGCTTCGG
GATATGACCGTAGAATTTGAGGCCCGAAAGGAACAAGAGAGGCTCCTGGG
CGAACTCAAAGAGCGCAACAAGAAAATTACCTGTCTCTACAGCGTTGGGG
AACTGATACGCGAGCAGGAAGTAGAAACGGACCTTTTTCGCTCGGTCACC
CAGGTGGTGCGACCGGCCTGCACGTTTCCGGAGATTACCCGAGCACGCAT
CATCTTCGACGGACAGGTCTATGAAGAATTAAGTGTGGTCGAGACGCCTT
GGGTGTGCAGCGCCCCTATC
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