mRNA_M-pyrifera_M_contig123147.4752.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123147.4752.1
Unique NamemRNA_M-pyrifera_M_contig123147.4752.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A7S0VDF5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VDF5_9CRYP)

HSP 1 Score: 80.5 bits (197), Expect = 2.000e-15
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGVSVGVLAFADGVRVLK 312
            + P NKYTR R +  GSSLH P L+K V S FT K+ + Q+T GG+R +++ +A+DVSASM G L   +   +  L  A +E+ V   ++ F   VR++K
Sbjct:  733 VMPFNKYTRRRCALKGSSLHLPGLVKAVISNFTYKKFFAQKTAGGKRNYSVCLALDVSASMNGHLGHCAQETLICLVAALQEMQVDFSIVLFGQRVRIIK 832
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A822CMK7_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822CMK7_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 1.690e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLK 312
            +FP NK+TR RA+  GSSL+ P LIK + ++++ K+I+  +  GG+R+H + +A+DVS SM G+L    +  + +L  A ++L + + G++ F   VR++K
Sbjct:  148 VFPYNKFTRRRAALRGSSLYLPGLIKAMTTEWSYKKIFSAKLAGGKREHAVCLAIDVSTSMFGTLSSGIMDGIIVLIGALKKLNLDNCGIILFGREVRLIK 248
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A818L3B9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818L3B9_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 2.640e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLK 312
            +FP NK+TR RA+  GSSL+ P LIK + ++++ K+I+  +  GG+R+H + +A+DVS SM G+L    +  + +L  A ++L + + G++ F   VR++K
Sbjct: 1480 VFPYNKFTRRRAALRGSSLYLPGLIKAMTTEWSYKKIFSAKLAGGKREHAVCLAIDVSTSMFGTLSSGIMDGIIVLIGALKKLNLDNCGIIIFGREVRLIK 1580
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A821R2I2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821R2I2_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 2.690e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLK 312
            +FP NK+TR RA+  GSSL+ P LIK + ++++ K+I+  +  GG+R+H + +A+DVS SM G+L    +  + +L  A ++L + + G++ F   VR++K
Sbjct: 6919 VFPYNKFTRRRAALRGSSLYLPGLIKAMTTEWSYKKIFSAKLAGGKREHAVCLAIDVSTSMFGTLSSGIMDGIIVLIGALKKLNLDNCGIIIFGREVRLIK 7019
[Close]
BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A818PBG9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818PBG9_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 2.690e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLK 312
            +FP NK+TR RA+  GSSL+ P LIK + ++++ K+I+  +  GG+R+H + +A+DVS SM G+L    +  + +L  A ++L + + G++ F   VR++K
Sbjct: 7716 VFPYNKFTRRRAALRGSSLYLPGLIKAMTTEWSYKKIFSAKLAGGKREHAVCLAIDVSTSMFGTLSSGIMDGIIVLIGALKKLNLDNCGIIIFGREVRLIK 7816
[Close]
BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A818LVS9_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818LVS9_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 2.690e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLK 312
            +FP NK+TR RA+  GSSL+ P LIK + ++++ K+I+  +  GG+R+H + +A+DVS SM G+L    +  + +L  A ++L + + G++ F   VR++K
Sbjct: 7220 VFPYNKFTRRRAALRGSSLYLPGLIKAMTTEWSYKKIFSAKLAGGKREHAVCLAIDVSTSMFGTLSSGIMDGIIVLIGALKKLNLDNCGIIIFGREVRLIK 7320
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A815MES6_9BILA (Hypothetical protein n=6 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A815MES6_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 2.690e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   13 LFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLK 312
            +FP NK+TR RA+  GSSL+ P LIK + ++++ K+I+  +  GG+R+H + +A+DVS SM G+L    +  + +L  A ++L + + G++ F   VR++K
Sbjct: 7875 VFPYNKFTRRRAALRGSSLYLPGLIKAMTTEWSYKKIFSAKLAGGKREHAVCLAIDVSTSMFGTLSSGIMDGIIVLIGALKKLNLDNCGIIIFGREVRLIK 7975
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A7S3D3S7_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D3S7_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   25 NKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGVS 270
            N +TR  AS  GSSLH   LIK + + FTEK+I+ +++ GGR  H++   +D S SM G   R +L A+ +L  +   +G+S
Sbjct:  248 NVFTRKAASTRGSSLHMGGLIKAIITNFTEKKIFAEKSRGGRSSHSVGFILDCSLSMVGFKHRMALQALMILASSVASIGLS 329
[Close]
BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A7R9YHQ6_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YHQ6_DIALT)

HSP 1 Score: 55.5 bits (132), Expect = 1.230e-7
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   34 TRWRAS-RSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGS-LLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLKVP 318
            TR R   RSG  L+   ++  + S + + +IW +RT    R+++++VAVD S SM  S     ++ AVG L     +L V SVGVLAFADGVR+L  P
Sbjct:    7 TRLRGDYRSGKRLNMRKVVPYIASGYRKDKIWLRRTRCSSRRYSLLVAVDDSESMALSGAAPLAVEAVGTLLTGLAQLEVGSVGVLAFADGVRLLHPP 104
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BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Match: A0A8J5X4B3_DIALT (VWFA domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4B3_DIALT)

HSP 1 Score: 55.5 bits (132), Expect = 1.280e-6
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   34 TRWRAS-RSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGRRQHTMVVAVDVSASMGGS-LLRSSLLAVGLLRQAAEELGV-SVGVLAFADGVRVLKVP 318
            TR R   RSG  L+   ++  + S + + +IW +RT    R+++++VAVD S SM  S     ++ AVG L     +L V SVGVLAFADGVR+L  P
Sbjct: 7419 TRLRGDYRSGKRLNMRKVVPYIASGYRKDKIWLRRTRCSSRRYSLLVAVDDSESMALSGAAPLAVEAVGTLLTGLAQLEVGSVGVLAFADGVRLLHPP 7516
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123147.4752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S0VDF5_9CRYP2.000e-1542.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A822CMK7_9BILA1.690e-1237.62Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A818L3B9_9BILA2.640e-1237.62Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A821R2I2_9BILA2.690e-1237.62Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A818PBG9_9BILA2.690e-1237.62Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A818LVS9_9BILA2.690e-1237.62Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 ... [more]
A0A815MES6_9BILA2.690e-1237.62Hypothetical protein n=6 Tax=Rotaria sp. Silwood1 ... [more]
A0A7S3D3S7_9EUKA1.010e-740.24Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7R9YHQ6_DIALT1.230e-741.84Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A8J5X4B3_DIALT1.280e-641.84VWFA domain-containing protein n=3 Tax=Diacronema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123147contigM-pyrifera_M_contig123147:52..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.6427662-CDS-M-pyrifera_M_contig123147:51..3721622815750.6427662-CDS-M-pyrifera_M_contig123147:51..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123147 52..372 -
1692277551.958357-CDS-M-pyrifera_M_contig123147:51..3721692277551.958357-CDS-M-pyrifera_M_contig123147:51..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123147 52..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123147.4752.1prot_M-pyrifera_M_contig123147.4752.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123147 52..372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123147.4752.1

>prot_M-pyrifera_M_contig123147.4752.1 ID=prot_M-pyrifera_M_contig123147.4752.1|Name=mRNA_M-pyrifera_M_contig123147.4752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MARALFPINKYTRWRASRSGSSLHTPSLIKLVQSQFTEKRIWRQRTGGGR
RQHTMVVAVDVSASMGGSLLRSSLLAVGLLRQAAEELGVSVGVLAFADGV
RVLKVPR
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mRNA from alignment at M-pyrifera_M_contig123147:52..372-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123147.4752.1 ID=mRNA_M-pyrifera_M_contig123147.4752.1|Name=mRNA_M-pyrifera_M_contig123147.4752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig123147:52..372- (Macrocystis pyrifera P11B4 male)
ATGGCGCGTGCACTCTTCCCCATCAACAAGTACACGAGGTGGAGGGCGAG
TCGCTCTGGCTCGTCGCTGCACACCCCGTCTCTGATCAAGCTGGTGCAGT
CGCAGTTCACGGAGAAGCGCATCTGGCGACAGCGGACGGGCGGCGGCCGT
CGGCAGCACACGATGGTGGTGGCGGTGGACGTCAGCGCCAGCATGGGGGG
CTCGCTGTTGCGGAGCAGTCTCCTGGCTGTGGGTCTGCTGCGGCAAGCTG
CTGAGGAGCTGGGTGTGAGCGTGGGCGTGCTCGCATTTGCCGACGGCGTG
CGAGTGCTGAAGGTGCCGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123147:52..372-

>mRNA_M-pyrifera_M_contig123147.4752.1 ID=mRNA_M-pyrifera_M_contig123147.4752.1|Name=mRNA_M-pyrifera_M_contig123147.4752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig123147:52..372- (Macrocystis pyrifera P11B4 male)
ATGGCGCGTGCACTCTTCCCCATCAACAAGTACACGAGGTGGAGGGCGAG
TCGCTCTGGCTCGTCGCTGCACACCCCGTCTCTGATCAAGCTGGTGCAGT
CGCAGTTCACGGAGAAGCGCATCTGGCGACAGCGGACGGGCGGCGGCCGT
CGGCAGCACACGATGGTGGTGGCGGTGGACGTCAGCGCCAGCATGGGGGG
CTCGCTGTTGCGGAGCAGTCTCCTGGCTGTGGGTCTGCTGCGGCAAGCTG
CTGAGGAGCTGGGTGTGAGCGTGGGCGTGCTCGCATTTGCCGACGGCGTG
CGAGTGCTGAAGGTGCCGCGCATGGCGCGTGCACTCTTCCCCATCAACAA
GTACACGAGGTGGAGGGCGAGTCGCTCTGGCTCGTCGCTGCACACCCCGT
CTCTGATCAAGCTGGTGCAGTCGCAGTTCACGGAGAAGCGCATCTGGCGA
CAGCGGACGGGCGGCGGCCGTCGGCAGCACACGATGGTGGTGGCGGTGGA
CGTCAGCGCCAGCATGGGGGGCTCGCTGTTGCGGAGCAGTCTCCTGGCTG
TGGGTCTGCTGCGGCAAGCTGCTGAGGAGCTGGGTGTGAGCGTGGGCGTG
CTCGCATTTGCCGACGGCGTGCGAGTGCTGAAGGTGCCGCGC
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