mRNA_M-pyrifera_M_contig12297.4719.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12297.4719.1
Unique NamemRNA_M-pyrifera_M_contig12297.4719.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12297.4719.1 vs. uniprot
Match: A0A6H5KJ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ01_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.820e-20
Identity = 56/123 (45.53%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:    1 QFVLPRVTVREAG----EESRLSGLVLTFVYAAGDIVRVRSDPVY-----------GKMKEDDD-------GSHD--FDIEYRWKRLPEEDEQAGIWLIFAVSLIVTTFLAVDACNSPSGEQE 297
            QFVL RV +RE G    E  RL  LV+TF  A G+IV++RSDPVY           G  K + D       G  D  F +EYRW  LPEED QAG+W +   SL+VT  LAVD CNS + +++
Sbjct:  104 QFVLRRVMLREEGSGNEEGRRLKRLVVTFACAGGEIVKIRSDPVYACRTVVGPLFGGLSKANGDTAATATAGGEDPGFQVEYRWDHLPEEDAQAGLWFLLFASLVVTAVLAVDVCNSTAEDRD 226
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12297.4719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ01_9PHAE1.820e-2045.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12297contigM-pyrifera_M_contig12297:3995..5296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.720694-CDS-M-pyrifera_M_contig12297:3994..41881622815748.720694-CDS-M-pyrifera_M_contig12297:3994..4188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12297 3995..4188 -
1692277551.1150966-CDS-M-pyrifera_M_contig12297:3994..41881692277551.1150966-CDS-M-pyrifera_M_contig12297:3994..4188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12297 3995..4188 -
1622815748.7334223-CDS-M-pyrifera_M_contig12297:5175..52961622815748.7334223-CDS-M-pyrifera_M_contig12297:5175..5296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12297 5176..5296 -
1692277551.1334438-CDS-M-pyrifera_M_contig12297:5175..52961692277551.1334438-CDS-M-pyrifera_M_contig12297:5175..5296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12297 5176..5296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12297.4719.1prot_M-pyrifera_M_contig12297.4719.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12297 3995..5296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12297.4719.1

>prot_M-pyrifera_M_contig12297.4719.1 ID=prot_M-pyrifera_M_contig12297.4719.1|Name=mRNA_M-pyrifera_M_contig12297.4719.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
QFVLPRVTVREAGEESRLSGLVLTFVYAAGDIVRVRSDPVYGKMKEDDDG
SHDFDIEYRWKRLPEEDEQAGIWLIFAVSLIVTTFLAVDACNSPSGEQES
SRRSG
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mRNA from alignment at M-pyrifera_M_contig12297:3995..5296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12297.4719.1 ID=mRNA_M-pyrifera_M_contig12297.4719.1|Name=mRNA_M-pyrifera_M_contig12297.4719.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig12297:3995..5296- (Macrocystis pyrifera P11B4 male)
CAATTTGTGCTTCCTCGGGTGACTGTGCGAGAGGCTGGCGAGGAGTCGCG
ACTGAGCGGACTCGTCCTTACCTTCGTCTATGCTGCGGGAGACATCGTCA
GGGTTCGCTCCGACCCCGTGTGTGAGACTTGAAAAGTGATCTGTGGTGGC
CCTTTTTGATAGGCAGGGCTGGAACTCACTGAGTTGACTATTCATCGGTA
CAGTAGAAGGTTGCGTGCGGTAATTTGCGGGATTCGGCGTCGTTGTGTCT
GATTGGCGCGACTGTGGATCGAAATATGCGTTTTGTTAATGAAGACCCTA
GTCAGGTAGTTGGCTTTCTTTCCCCCCCCCCCGATTAATAAGTACCCGTC
AGATTATTGGTATGCCAACTAAATGTCACAGCCCTATCTCAGTGAGCTTT
CCGATAATGTGTTTTTGCCAGGCCGATACTCCGTATGAATCGTGCGTGCG
GGACTGTTGAACCTTTGACTGAGTACTTTGGCGGCATACATGTTGAGAGT
GATAACGTGTGCCGCTGGTGAGGCTAGTGGTTATAGTACGTAGCTCGCTA
CTTGCTGTACGTTGTCTTAGAAGGCATTCGGCTCTCGAGGACGGCTTTTT
CTCTCGGGTACGAATCGAGGATGGACATTGCGCTTCAATCGTCCAAGCAG
TAGTTTTCCGTAATTCTACTCCACTCTCGCGATCTTGAGCTAATATTTGG
AACAGCAGATGCTCGTGCCAACTCTCACGCTGCCGTGCTTTGTTGTCAAT
CTCGGGATATCCAGCTATTACTAGAGTTTCAACCATAAGAGAGAGCACGT
GTTGTGTCCATTATGTTATTCGTTCAACCATAAGAGAAAGCACGTATTGC
GTCCATTATGTTCTTCGTTCAACCATAAGAGAGAGCACGTATTGCGTCCA
TTATGTTGTTCATTCAACCGTAAGAGAGAGCACGTATTGCGTCCATTATG
TTGTTCATGACCATGGCAGCAAGGTGATGAAAATTATCAGCTTTTAGGAG
CGCGTGTATAGGGCGTCGAAAGTCTGAACGCGCAGCCGCGACGCGGACTC
GGCCTCCCCGTCCAAACCCTCGACGCACGCCGCCCCGATGATACGCTTGC
ATTTTCAGATGGCAAGATGAAGGAAGACGACGACGGCAGCCACGATTTCG
ACATCGAGTACCGATGGAAAAGGCTGCCAGAAGAGGACGAACAAGCCGGA
ATTTGGCTTATATTCGCCGTGTCTCTCATAGTCACGACGTTTCTTGCGGT
AGATGCCTGCAACAGTCCTAGCGGAGAGCAAGAGTCGTCGAGAAGAAGTG
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12297:3995..5296-

>mRNA_M-pyrifera_M_contig12297.4719.1 ID=mRNA_M-pyrifera_M_contig12297.4719.1|Name=mRNA_M-pyrifera_M_contig12297.4719.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig12297:3995..5296- (Macrocystis pyrifera P11B4 male)
CAATTTGTGCTTCCTCGGGTGACTGTGCGAGAGGCTGGCGAGGAGTCGCG
ACTGAGCGGACTCGTCCTTACCTTCGTCTATGCTGCGGGAGACATCGTCA
GGGTTCGCTCCGACCCCGTGTCAATTTGTGCTTCCTCGGGTGACTGTGCG
AGAGGCTGGCGAGGAGTCGCGACTGAGCGGACTCGTCCTTACCTTCGTCT
ATGCTGCGGGAGACATCGTCAGGGTTCGCTCCGACCCCGTGTATGGCAAG
ATGAAGGAAGACGACGACGGCAGCCACGATTTCGACATCGAGTACCGATG
GAAAAGGCTGCCAGAAGAGGACGAACAAGCCGGAATTTGGCTTATATTCG
CCGTGTCTCTCATAGTCACGACGTTTCTTGCGGTAGATGCCTGCAACAGT
CCTAGCGGAGAGCAAGAGTCGTCGAGAAGAAGTGGAATGGCAAGATGAAG
GAAGACGACGACGGCAGCCACGATTTCGACATCGAGTACCGATGGAAAAG
GCTGCCAGAAGAGGACGAACAAGCCGGAATTTGGCTTATATTCGCCGTGT
CTCTCATAGTCACGACGTTTCTTGCGGTAGATGCCTGCAACAGTCCTAGC
GGAGAGCAAGAGTCGTCGAGAAGAAGTGGA
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