mRNA_M-pyrifera_M_contig122966.4716.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122966.4716.1
Unique NamemRNA_M-pyrifera_M_contig122966.4716.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A7S2GKZ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKZ9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.850e-28
Identity = 74/157 (47.13%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    4 KAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAPAEEDGEPEATEEQLAAMSSAERRSYKARAR 474
            K  KYMLRAGR +DA+ T+ LFTRH+GDP   L +MQV+W   E G  A LRD   G ALK +  VE+ F +F DDQFDF +YCLRK  LR +V +L+ +D + SH+   RAA  A +  L +  AP   D    A     A+M+ A+R+  KA+AR
Sbjct:  545 KTTKYMLRAGRLKDAMSTIALFTRHEGDPQQNLFEMQVMWVEIEYGE-AGLRDKKYGVALKKFLAVEKHFNDFIDDQFDFHTYCLRKMTLRAYVSILQMNDRIQSHKFFHRAAVGAVKCYLAVFDAPKTSDNSG-AQSPDYASMTPAQRKREKAKAR 699          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A7S2LJ27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LJ27_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.160e-24
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 1
Query:    4 KAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAPAEEDGEPEATEEQLAAMSSAERRSYKARAR 474
            K  KYMLRA R   AL+ ++LFTRH+G+P+  L DMQ +WY E     +  R    G++LK YA VE+ F ++ +DQFDF SYC+RK  LR+++ +LR +D +   +   +AA     + L L   P  ED +  + E+  + M++AE++  KA AR
Sbjct:  155 KTTKYMLRADRDETALERISLFTRHEGNPSQNLYDMQCVWY-ELEAAASFARQRKWGQSLKKYAAVEKHFEDYNEDQFDFHSYCIRKVTLRSYMSVLRFEDEIFGEKSYRKAAEGLIGIYLHLFDHP--EDAKVNSKEQDYSKMTAAEKKKAKAIAR 308          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A261XWE8_9FUNG (Cyclin N-terminal domain-containing protein (Fragment) n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XWE8_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 3.290e-23
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 TKAAKYMLRAGRARDALDTVTLFTRHDG-DPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAP 384
            +K AKYMLR  +  +A  T+ LFTRHD   P   L DMQ +W+  E G  A LR +D G+ALK Y  + +TF +  DDQFDF +YCLRKT LR +V  LR +D + SH   +RA   A +  L L+  P
Sbjct:  449 SKCAKYMLRTNKVEEAEKTIGLFTRHDAPSPWQDLVDMQCMWFALEEGE-AFLRRNDLGKALKRYHVIAKTFDDIMDDQFDFHTYCLRKTTLRAYVSTLRWEDQLYSHNYYVRACNGAIKAYLDLYDRP 576          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A7S2XII7_9STRA (Hypothetical protein n=3 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XII7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.280e-21
Identity = 64/156 (41.03%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    4 KAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAP--AEEDGEPEATEEQLAAMSSAERRSYKA 465
            +  KYML+A R   AL+ ++LFTRH+G+P   L DMQ  WY  E   C   R  + G++LK Y  VE+ F +F +DQFDF SYC+RK  LR +V +LR +D +       RAA    R  L L+  P   +E+ EP+      A+M++A+R+  KA
Sbjct:  430 QTTKYMLQANREDVALERISLFTRHEGNPEQNLFDMQCTWYELELADCMA-RKGNWGKSLKKYMAVEKHFDDFHEDQFDFHSYCIRKVTLRAYVDILRYEDNLWGEEFYGRAAEGIIRCYLHLYDNPDILKEEEEPD-----YASMTAAQRKKAKA 579          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A6V0B4X1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0B4X1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.760e-21
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = 1
Query:    4 KAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRC-AELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAP--AEEDGEPEATEEQLAAMSSAERRSYKARARRQR 483
            +  KYML AG  ++ALD +++FT+H+G+P   L +MQ  WY    G C AE ++   G+ALK Y+ V + F +F +DQFDF SYC+RK  LR +  +L+ +D +        AA    ++ L LH  P   +ED EP+ ++     M++A+R+  KA AR++R
Sbjct:  502 QTTKYMLEAGMEKEALDRISMFTKHEGNPEVNLYEMQCSWYELGLGACFAEKKEW--GKALKKYSAVVKHFDDFHEDQFDFHSYCVRKVTLRAYTDVLKFEDNLWGEDYYFTAAEGTIKIYLHLHDNPEITKEDAEPDYSK-----MTAAQRKKAKAIARKKR 657          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A4P9XKN3_9FUNG (NMDA receptor-regulated protein 1 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XKN3_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 2.930e-21
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 TKAAKYMLRAGRARDALDTVTLFTRHD-GDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARL 360
            +K  KY++R+ R  +A  T+ LFTR D  DP   L DMQ LW+ +E      +R +  GRALK   Q+E+ F +F DDQFDF +YCLRKT LR+++R+L+ +D + +H   + AA SA ++
Sbjct:  451 SKCTKYLIRSNRIEEAEKTIGLFTRPDIKDPIKDLIDMQCLWFAKETAH-GYIRQNKIGRALKRLHQIEKHFDDFTDDQFDFHTYCLRKTTLRSYIRLLKFEDTLYTHPTFVDAAESAIKV 570          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A8J5XX15_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX15_DIALT)

HSP 1 Score: 98.6 bits (244), Expect = 8.310e-21
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 TKAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLH 375
            TKA +Y+LRAGR  +A +T+ LFT+   D  + L DMQ +W+  E G  A L     G ALK    VE+ F +  +DQFDF +YCLRK+ LR++V++LR ++ +  H    RAA  A R+ LRLH
Sbjct:  494 TKATRYLLRAGRVDEAGNTIALFTKDGSDKESNLYDMQCMWWEAEAGE-ALLVQGRIGPALKKLLSVERHFVDIVEDQFDFHTYCLRKSTLRSYVQLLRLEEHVWGHPFFERAAHGAIRIFLRLH 617          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A448ZTE8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTE8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.770e-20
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    4 KAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSDP-GRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAP--AEEDGEPEATEEQLAAMSSAERRSYKARAR 474
            +  KYML AG  ++ALD +++FT+HDG+P   L +MQ  WY  E G  A        G+ALK Y+ V + F +F +DQFDF SYC+RK  LR +  +L+ +D +        AA    ++ L LH  P   +ED EP+ ++     M++A+R+  KA AR
Sbjct:  368 QTTKYMLEAGMEKEALDRISMFTKHDGNPEVNLYEMQCSWY--ELGLAASFATKKEWGKALKKYSAVVKHFDDFHEDQFDFHSYCVRKVTLRAYTDVLKFEDNLWGEDYYYTAAEGMIKIYLYLHDNPETTKEDAEPDYSK-----MTAAQRKKAKAIAR 520          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: A0A2K1KPA6_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KPA6_PHYPA)

HSP 1 Score: 96.3 bits (238), Expect = 5.270e-20
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 TKAAKYMLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAPAEEDGEPEATEEQLAAMSSAERR 453
            ++  K ML+A +   A  T  LFT+ DGD    L DMQ +WY    G  +  R  + G+ALK Y  VE+ + +  +DQFDF +YCLRK  LR ++RMLR  D + SHR   RAA SA R  ++LH +P +   E +  E  +A + +AER+
Sbjct:  453 SECVKRMLQADQVELAEKTAVLFTK-DGDQHNNLFDMQCMWYELASGD-SHFRQGNMGKALKKYLSVEKHYNDMVEDQFDFHTYCLRKMTLRAYIRMLRFQDHLHSHRFFFRAATSAIRCYIKLHDSPPKAVAEEQ--EAVIAGLPAAERK 599          
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Match: F2UA97_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UA97_SALR5)

HSP 1 Score: 95.9 bits (237), Expect = 6.900e-20
Identity = 65/155 (41.94%), Postives = 85/155 (54.84%), Query Frame = 1
Query:    1 TKAAKYMLRAGRARDALDTVTLFTRH--DGDPTAQLRDMQVLWYMEERGRCAELRDSDPGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTSHRVALRAAASAARLRLRLHAAPAEEDGEPEATEEQLAAMSSAERRSY 459
            +KAAKY+LRAGR  +      LF R   + DP  QLRDMQ  WY  E  + A L   D G AL +   V+  +    DDQFDF SYCLRK  LR + R+L+ +D    H+  ++ AA A  +   LH  P     E E  +E+LA MS +ER+ Y
Sbjct:  301 SKAAKYLLRAGRIEEGQTIAGLFARETRNTDPLNQLRDMQCSWYELECAK-AYLAKGDLGNALAHLHAVKSFYKQLVDDQFDFHSYCLRKVNLRAYTRLLKYEDEAYFHKRYVQTAAYACSVYAELHNNPFGSAKERE-EQERLAKMSESERKKY 453          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122966.4716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2GKZ9_9STRA1.850e-2847.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2LJ27_9STRA5.160e-2440.13Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A261XWE8_9FUNG3.290e-2346.51Cyclin N-terminal domain-containing protein (Fragm... [more]
A0A7S2XII7_9STRA1.280e-2141.03Hypothetical protein n=3 Tax=Attheya septentrional... [more]
A0A6V0B4X1_9STRA1.760e-2138.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A4P9XKN3_9FUNG2.930e-2143.80NMDA receptor-regulated protein 1 n=1 Tax=Thamnoce... [more]
A0A8J5XX15_DIALT8.310e-2144.80Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A448ZTE8_9STRA2.770e-2038.75Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A2K1KPA6_PHYPA5.270e-2041.06Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
F2UA97_SALR56.900e-2041.94Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122966contigM-pyrifera_M_contig122966:18..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog157072.XP_008876110.1
Preferred nameNAA16
KEGG koko:K20792
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG1156@1,KOG1156@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size507
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.590088-CDS-M-pyrifera_M_contig122966:17..5061622815748.590088-CDS-M-pyrifera_M_contig122966:17..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122966 18..506 -
1692277551.053409-CDS-M-pyrifera_M_contig122966:17..5061692277551.053409-CDS-M-pyrifera_M_contig122966:17..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122966 18..506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.601908-UTR-M-pyrifera_M_contig122966:506..5241622815748.601908-UTR-M-pyrifera_M_contig122966:506..524Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122966 507..524 -
1692277551.0663102-UTR-M-pyrifera_M_contig122966:506..5241692277551.0663102-UTR-M-pyrifera_M_contig122966:506..524Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122966 507..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122966.4716.1prot_M-pyrifera_M_contig122966.4716.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122966 18..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122966.4716.1

>prot_M-pyrifera_M_contig122966.4716.1 ID=prot_M-pyrifera_M_contig122966.4716.1|Name=mRNA_M-pyrifera_M_contig122966.4716.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MLRAGRARDALDTVTLFTRHDGDPTAQLRDMQVLWYMEERGRCAELRDSD
PGRALKYYAQVEQTFANFRDDQFDFLSYCLRKTRLRTFVRMLRGDDAMTS
HRVALRAAASAARLRLRLHAAPAEEDGEPEATEEQLAAMSSAERRSYKAR
ARRQRAKRAKETA
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mRNA from alignment at M-pyrifera_M_contig122966:18..524-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122966.4716.1 ID=mRNA_M-pyrifera_M_contig122966.4716.1|Name=mRNA_M-pyrifera_M_contig122966.4716.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig122966:18..524- (Macrocystis pyrifera P11B4 male)
ACCAAGGCGGCCAAGTACATGCTGCGCGCCGGCCGGGCGCGCGACGCGCT GGACACGGTGACGCTGTTCACTCGGCACGACGGCGACCCGACGGCGCAGC TGCGCGACATGCAGGTGCTGTGGTACATGGAGGAACGCGGGCGGTGCGCG GAGCTGCGCGACTCGGACCCGGGCCGCGCGCTCAAGTACTACGCGCAGGT GGAGCAGACGTTCGCCAACTTCCGCGACGACCAGTTCGACTTCCTGTCCT ACTGCCTGCGCAAGACCCGGCTGCGCACGTTCGTGCGCATGCTGCGAGGC GACGACGCCATGACCAGCCACCGCGTTGCGCTGCGCGCCGCAGCGTCCGC CGCGCGGCTGCGCCTCCGGCTGCACGCCGCGCCCGCCGAGGAAGACGGCG AGCCGGAAGCCACGGAGGAGCAGCTCGCCGCCATGTCCTCCGCCGAGCGT CGATCCTACAAGGCCCGTGCCCGCCGGCAGCGCGCCAAACGCGCCAAGGA GACGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122966:18..524-

>mRNA_M-pyrifera_M_contig122966.4716.1 ID=mRNA_M-pyrifera_M_contig122966.4716.1|Name=mRNA_M-pyrifera_M_contig122966.4716.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig122966:18..524- (Macrocystis pyrifera P11B4 male)
ATGCTGCGCGCCGGCCGGGCGCGCGACGCGCTGGACACGGTGACGCTGTT
CACTCGGCACGACGGCGACCCGACGGCGCAGCTGCGCGACATGCAGGTGC
TGTGGTACATGGAGGAACGCGGGCGGTGCGCGGAGCTGCGCGACTCGGAC
CCGGGCCGCGCGCTCAAGTACTACGCGCAGGTGGAGCAGACGTTCGCCAA
CTTCCGCGACGACCAGTTCGACTTCCTGTCCTACTGCCTGCGCAAGACCC
GGCTGCGCACGTTCGTGCGCATGCTGCGAGGCGACGACGCCATGACCAGC
CACCGCGTTGCGCTGCGCGCCGCAGCGTCCGCCGCGCGGCTGCGCCTCCG
GCTGCACGCCGCGCCCGCCGAGGAAGACGGCGAGCCGGAAGCCACGGAGG
AGCAGCTCGCCGCCATGTCCTCCGCCGAGCGTCGATCCTACAAGGCCCGT
GCCCGCCGGCAGCGCGCCAAACGCGCCAAGGAGACGGCCATGCTGCGCGC
CGGCCGGGCGCGCGACGCGCTGGACACGGTGACGCTGTTCACTCGGCACG
ACGGCGACCCGACGGCGCAGCTGCGCGACATGCAGGTGCTGTGGTACATG
GAGGAACGCGGGCGGTGCGCGGAGCTGCGCGACTCGGACCCGGGCCGCGC
GCTCAAGTACTACGCGCAGGTGGAGCAGACGTTCGCCAACTTCCGCGACG
ACCAGTTCGACTTCCTGTCCTACTGCCTGCGCAAGACCCGGCTGCGCACG
TTCGTGCGCATGCTGCGAGGCGACGACGCCATGACCAGCCACCGCGTTGC
GCTGCGCGCCGCAGCGTCCGCCGCGCGGCTGCGCCTCCGGCTGCACGCCG
CGCCCGCCGAGGAAGACGGCGAGCCGGAAGCCACGGAGGAGCAGCTCGCC
GCCATGTCCTCCGCCGAGCGTCGATCCTACAAGGCCCGTGCCCGCCGGCA
GCGCGCCAAACGCGCCAAGGAGACGGCC
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