mRNA_M-pyrifera_M_contig12286.4699.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12286.4699.1
Unique NamemRNA_M-pyrifera_M_contig12286.4699.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: A0A6H5K161_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K161_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.240e-89
Identity = 170/261 (65.13%), Postives = 186/261 (71.26%), Query Frame = 1
Query:   13 LLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERG---------------------------ELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATSQGDTALMVACLSAVETEASSETIAALLEPHSDKISSGGSTAXXXXXXXXXXXXXXXXSKLSRKFALGPDDPRLLSRNRHGHTALHCAAFAQSPTAVRLLLEAGADCTVGDKAGRTAVDVALNLEGKK-TALREGPRGG 711
            LLEAVH+VNV R AALL RGADVN TDAQGVTPLIIACERG                           EL+M+DLLL+A+ASTKM TN+TQSSCLHIAAKNNA  IV RLL VDPTIEE+ATSQGDTALMVACLSAVETEASS T+ ALL P     +   + A                 K +    LGPDDPRL++RNRHGHTALHCAAF+QSPTAVRLLLEAGADCT+GDKAGRTAV+VALNL  KK T LREG RGG
Sbjct:    4 LLEAVHQVNVQRAAALLARGADVNTTDAQGVTPLIIACERGALCLGTSSNHAVTVTAXXXXXXPAATGELKMLDLLLKARASTKMVTNDTQSSCLHIAAKNNAAEIVLRLLEVDPTIEEKATSQGDTALMVACLSAVETEASSATLNALLRPRPTSTTGPSNNATSAPPRKTGSYASAGDGK-APVAVLGPDDPRLVARNRHGHTALHCAAFSQSPTAVRLLLEAGADCTIGDKAGRTAVEVALNLNKKKATGLREGARGG 263          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: D8LLU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU4_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 2.110e-88
Identity = 161/225 (71.56%), Postives = 177/225 (78.67%), Query Frame = 1
Query:   13 LLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATSQGDTALMVACLSAVETEASSETIAALLEPHSDKISSGGSTAXXXXXXXXXXXXXXXXSKLSRKFALGPDDPRLLSRNRHGHTALHCAAFAQSPTAVRLLLEAGADCTVGDKAGRTAVDVALNLEGKKTA 687
            LLEAVHRVNV R A LL RGADVN TDAQGVTPLIIACERGEL+M+DLLL+A+ASTKM TN+TQSSCLHIAAKNNA  IV RLL VDPTIEERATSQGDTALMVACLSAVETEASS T+ ALL+P     +   + A                 K +    LGPDDPRL++RNRHGHTALHCAAF+QSPTAVRLLLEAGADCT+ D+AG TAV+VALNL  K TA
Sbjct:    4 LLEAVHRVNVQRAATLLARGADVNTTDAQGVTPLIIACERGELKMLDLLLKARASTKMVTNDTQSSCLHIAAKNNAEDIVLRLLEVDPTIEERATSQGDTALMVACLSAVETEASSATLNALLQPRLATTTGPSNKASGPPPRKTGRYASAGDGK-APVAVLGPDDPRLVARNRHGHTALHCAAFSQSPTAVRLLLEAGADCTIRDEAGLTAVEVALNLIKKATA 227          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: UPI000B2F7876 (ankyrin repeat domain-containing protein n=1 Tax=Novosphingobium rosa TaxID=76978 RepID=UPI000B2F7876)

HSP 1 Score: 60.1 bits (144), Expect = 6.860e-7
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 1
Query:   13 LLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATSQGDTALMVACLS 336
            L++AV R + P V  LL  GAD ++ D +G++PL +AC+ G   ++D LL A      A     +  LHI A+     +V RLL      +    S+G+T LM A  S
Sbjct:   69 LMQAVDRQDAPLVGLLLAAGADADLADEEGLSPLTLACQLGSETVLDRLLSAPHINLRAALPDGAGALHICARYAPATVVARLLAAKLPADA-LDSRGETPLMWAAAS 175          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: A0A812TYL4_9DINO (Ankrd17 protein n=3 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812TYL4_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.300e-6
Identity = 61/215 (28.37%), Postives = 86/215 (40.00%), Query Frame = 1
Query:   49 VAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATSQGDTALMVACLSAVETEASSETIAALLEPHSDKISSGGSTAXXXXXXXXXXXXXXXXSKLSRKFALGPDDPRLLSRNRHGHT-------ALHCAAFAQSPTAVRLLLEAGADCTVGDKAGRTAVDVALNLE 672
            V  LL   A VN  D++   PL  AC    L    +LL A A  +M T          AA + AV++ R LLR+DP +  R    G               +S+E +A LLE  +D                           LS +  + P    LL++  H H        ++ C  F  S    RLLL+AGAD  + +  G+TA D+A  +E
Sbjct:  284 VKVLLAAKAKVNARDSRHSIPLHWACHSDNLEAARILLHAGADLRM-TQLLGFDAFACAAGSGAVKVTRELLRIDPEVSLRYRLHGALIFF---------SSSTEIVATLLEAKAD---------VDEQLQIANSIWRTMFMALSLRHRISPS---LLTKLAHHHQRATPLMLSILCGGFGAS----RLLLQAGADVNIRNSRGKTAADLAREVE 472          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: UPI00159CC0BF (CARD- and ANK-domain containing inflammasome adapter protein n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI00159CC0BF)

HSP 1 Score: 57.4 bits (137), Expect = 6.600e-6
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    1 MSLSLLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLR--VDPTI 282
            + L+L  AV +     V AL+  GADVN+ D QG TPL++A E G   +  +LL  +A    A  +  SS LH+A  + +V IV+ LL   +DP I
Sbjct:  404 LGLALFSAVRQNQHGTVTALIDSGADVNMCDTQGYTPLLLAAELGHPEVFRVLLAKQAKIDAALCDC-SSALHLAVHSGSVPIVQTLLEKGLDPNI 498          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: A0A2H9SJQ1_9GAMM (Uncharacterized protein n=1 Tax=Legionella sp. TaxID=459 RepID=A0A2H9SJQ1_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 8.480e-6
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    4 SLSLLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTI 282
            S  L+ A+   +   V  LL  GA+ NI+++ GVTPL IA  +G L +V+ L+EA A       +  ++ LH A   N + +V RL++    I
Sbjct:  473 STPLMIAIQNDHADMVKLLLNMGANPNISNSFGVTPLAIAAHQGHLEIVNCLIEAHARLDQRKTDDGATALHFAVAGNHIAVVERLVQAGANI 565          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: A0A6L4YDN0_9RHOO (Ankyrin repeat-containing protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YDN0_9RHOO)

HSP 1 Score: 55.8 bits (133), Expect = 8.840e-6
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   13 LLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVD 273
            LL A+ R N+P V  LL    D++ITD QG++PL+ A +RGE +MV +L++  AS  +     ++S L  A +NN   +   L +V+
Sbjct:  129 LLNAIQRSNLPYVKTLLTMDFDLDITDEQGMSPLMCAAQRGEFKMVQMLIKRGASPFLVGPSGKASDL--ALQNNFPAVNEFLKKVE 213          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: UPI002007F9E6 (uncharacterized protein n=1 Tax=Annulohypoxylon maeteangense TaxID=1927788 RepID=UPI002007F9E6)

HSP 1 Score: 57.0 bits (136), Expect = 9.740e-6
Identity = 68/257 (26.46%), Postives = 102/257 (39.69%), Query Frame = 1
Query:   22 AVHRVNVPRVAA----LLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTK-MATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATS-QGDTALMVACLSAVETEASSETIAALLEPHSDKISSGGSTAXXXXXXXXXXXXXXXXSKLSRKFALGPD------------------------DPRLLSRNRHGHTALHCAAFAQSPTAVRLLLEAGADCTVGDKAGRTAVDVALNLEGKKTALREGP 702
            A+H   +  +A     LL  GAD+   D Q  TPL++AC   ++R V +LL+  A+   +AT+      LHIAA+     +VR LL    +   R      DT L +A   +      ++T+  LLE  +D  +  G+                                                      DPR + ++R G + L  AA       V+ LL+AG D T  D  GRTA DVA NL+ ++    + P
Sbjct:  989 ALHHATMENMAEAVEQLLDSGADIECQDGQDATPLLLACLGEQMRTVRVLLDRGANPDHIATDSANYRALHIAARQGNEPLVRVLLEAGSSENARLKKPMWDTPLHLAIYHSQNDTQYAQTVNTLLEFGADVDALNGNNMTPLHIVIKESKDENIAKSXXXXXXXXXXXXXXXXXXXXXXXXXNSPMASILWDPRGIMKDR-GVSVLFAAASQGKVLRVQQLLKAGYDKTEQDSWGRTAFDVASNLDVRELLAPDTP 1244          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: A0A7R8WMP3_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WMP3_9CRUS)

HSP 1 Score: 55.5 bits (132), Expect = 2.810e-5
Identity = 59/211 (27.96%), Postives = 90/211 (42.65%), Query Frame = 1
Query:   67 RGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATSQGDTALMVACLSAVETEASSETIAALLEPHSDKISSGGSTAXXXXXXXXXXXXXXXXSKLSRKFA-LGPDDPRLLS-RNRHGHTALHCAAFAQSPTAVRLLLEAGADCTVGDKAGRTAVDVALNLEGKKTALR 693
            RG  +N  D  G TPL  A  +G +  V LLLEA A   +  NE   + + +A   + + +          I E     G T L +A ++        +++  LLE    +                          L  ++  L P+D  +++ RN  G+T L  A   Q    VRLLL+AGAD T+ +KAG+T +D+A N     + LR
Sbjct:  156 RGDMLNERDNDGDTPLSCAVRKGRVECVRLLLEAGADLTIG-NEEGKTPIDLAENGSEISLC--------LIREAKVKYGKTPLKLAAITR-----DIDSLKQLLEEDMTRFWKKTEDGQLPIHTAAQFGGRKVVGFLLCRYEKLHPEDGDMVNYRNGDGNTPLSLAVQKQDIETVRLLLQAGADVTIANKAGKTPIDLAENESEVLSELR 352          
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Match: A0A7R9BDG4_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BDG4_9CRUS)

HSP 1 Score: 55.1 bits (131), Expect = 3.230e-5
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   49 VAALLCRGADVNITDAQGVTPLIIACERGELRMVDLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVD 273
            + +LL  GA  N+ D +G +PL++A ER   R+V LLL+  A+ + ATN  + + LH+AA+ N V +   LL+ D
Sbjct:  171 IESLLRVGAQPNVFDDEGASPLMLATERNCPRLVRLLLQNGANPE-ATNRYKETALHVAARRNLVTVAEELLKAD 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12286.4699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K161_9PHAE1.240e-8965.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLU4_ECTSI2.110e-8871.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000B2F78766.860e-735.19ankyrin repeat domain-containing protein n=1 Tax=N... [more]
A0A812TYL4_9DINO1.300e-628.37Ankrd17 protein n=3 Tax=unclassified Symbiodinium ... [more]
UPI00159CC0BF6.600e-639.58CARD- and ANK-domain containing inflammasome adapt... [more]
A0A2H9SJQ1_9GAMM8.480e-634.41Uncharacterized protein n=1 Tax=Legionella sp. Tax... [more]
A0A6L4YDN0_9RHOO8.840e-637.93Ankyrin repeat-containing protein n=1 Tax=Rhodocyc... [more]
UPI002007F9E69.740e-626.46uncharacterized protein n=1 Tax=Annulohypoxylon ma... [more]
A0A7R8WMP3_9CRUS2.810e-527.96Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A7R9BDG4_9CRUS3.230e-540.00Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12286contigM-pyrifera_M_contig12286:222..7521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue1.5e-76
Seed eggNOG ortholog2880.D8LLU4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size711
Cds size711
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12286.4699.1prot_M-pyrifera_M_contig12286.4699.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12286 222..7521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.4704714-CDS-M-pyrifera_M_contig12286:221..6191622815747.4704714-CDS-M-pyrifera_M_contig12286:221..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 222..619 -
1692277550.4235353-CDS-M-pyrifera_M_contig12286:221..6191692277550.4235353-CDS-M-pyrifera_M_contig12286:221..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 222..619 -
1622815747.4858212-CDS-M-pyrifera_M_contig12286:2535..26041622815747.4858212-CDS-M-pyrifera_M_contig12286:2535..2604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 2536..2604 -
1692277550.4359717-CDS-M-pyrifera_M_contig12286:2535..26041692277550.4359717-CDS-M-pyrifera_M_contig12286:2535..2604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 2536..2604 -
1622815747.5017617-CDS-M-pyrifera_M_contig12286:5120..52311622815747.5017617-CDS-M-pyrifera_M_contig12286:5120..5231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 5121..5231 -
1692277550.4458952-CDS-M-pyrifera_M_contig12286:5120..52311692277550.4458952-CDS-M-pyrifera_M_contig12286:5120..5231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 5121..5231 -
1622815747.51258-CDS-M-pyrifera_M_contig12286:7388..75211622815747.51258-CDS-M-pyrifera_M_contig12286:7388..7521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 7389..7521 -
1692277550.4553273-CDS-M-pyrifera_M_contig12286:7388..75211692277550.4553273-CDS-M-pyrifera_M_contig12286:7388..7521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12286 7389..7521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12286.4699.1

>prot_M-pyrifera_M_contig12286.4699.1 ID=prot_M-pyrifera_M_contig12286.4699.1|Name=mRNA_M-pyrifera_M_contig12286.4699.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=237bp
MSLSLLEAVHRVNVPRVAALLCRGADVNITDAQGVTPLIIACERGELRMV
DLLLEAKASTKMATNETQSSCLHIAAKNNAVRIVRRLLRVDPTIEERATS
QGDTALMVACLSAVETEASSETIAALLEPHSDKISSGGSTATSTSWGGGG
SSGSGSGSKLSRKFALGPDDPRLLSRNRHGHTALHCAAFAQSPTAVRLLL
EAGADCTVGDKAGRTAVDVALNLEGKKTALREGPRGG
back to top

mRNA from alignment at M-pyrifera_M_contig12286:222..7521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12286.4699.1 ID=mRNA_M-pyrifera_M_contig12286.4699.1|Name=mRNA_M-pyrifera_M_contig12286.4699.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7300bp|location=Sequence derived from alignment at M-pyrifera_M_contig12286:222..7521- (Macrocystis pyrifera P11B4 male)
ATGAGCTTGAGCTTGCTGGAAGCGGTCCACCGGGTTAACGTACCCCGCGT AGCTGCACTTCTGTGCCGAGGCGCCGATGTCAACATCACGGATGCTCAGG GCGTCACCCCTCTCATCATAGCCTGCGAAAGAGGTACTGAGTCTCGAAAC GCTATCTTTCGTACATACGTAGTCTCGTGGCCGTCATCGTTAAGCTTGCA TCCGAAGCCGAGAGGCGGGCAGTGTCGTGGTCAGCACAAGGCACGTAGCA ATCCATCTCCATTGACGTGCCATGCGGCCGCCATGAAAATATCTGCAGCG ATAACTGCGGTTCTCTCCAAGGGTTGTCCTCCTTGTTGCCTGCGTAGTGT TTCGTAGCGCATAGATAAACGGCTTGTGGGCCGTCGAATTGGGGCCGCAA AAATTGCCCAAAATTTCGTACCTGGCATATATGCCTCTGGTACCAGGTAG CGCGCGATCCTGTTGCACTTTGAGCCACCGCTCGTAACCATAGACCGGTA TGCAAGTGCTACTGCTTGCTGTTGTGGTGCATGCGCATGATATAAGGCGA TGGAAAGCCGGCAACAGGTCCCCCAAGTACGATAGGAAAGTAAAAAAACA GCAACTCGGGCGCAGTTTTTCCCTGGCGACGAAAAAAATGTCGTCGGGTC GGGTCAGCAGTGTTTCTGGTGATAGATAGACATGTGCATGATGCACCCCA ACTTGTTCCAGAAGCAGGAATTGTGACTTGTGACTCGTGACTAATCTTGT AATAAAACTCAAATGCTGTGAAACTGCGAAACTAAAAACTACTCTGCTAC TGCTGCTGTGCATGCCTGTTGTGGCTGTAGTTGTTGTTGTTGTTGTCGTT GTTGTTGTTGATGATGATCTCACATAGACTCTCAAATCAAGGAGTGGGTG GTCACACACTGGCCTGTATATCTTTGACAAGGAATTACGCGCGTTCGGTT CATTAAAAATACTTGTAAAATTCGGTAAAAATGGAATATAGACGAGATCT ATTACGCAGCTTGCAAAGTTGAGTATCAACTATTTAATCACATGATCAGT CGAACTCACAGCTGACGTATTTCATAAATTTATAAAAAAGGTGCTGGAGC CCTGTTCATTCATCAATAGGAAGATCCGAAAACCCATACCAGGTCGTACC AGGTACGTATAAAATCAAAAGTCGGCTGGGAAGGACGACGCTTTCCGCCT AACAATACACGAGACGAAGGCGCACACGAAAAAGCCTGTACGTTGATTAC TGGTCACACTGCTCGTACTATTAATGCTGCTGTATTAATATATCTATTCG TAAGAGTCACGAACCAAAACATCTCCGCCACCGCTGGCGCAGTAACTGTC AACGATGGTTGGTTCGCGCGCCGAGCGAGGTGAGTACTCTCTGCTAATTG CATGCCGCGCTGAGATACCAGCGATGGTGTAATCTTGAGCGGAGTCTCCA GCCGCTTCTGAGAGGTCTACTTTCATTTCATTTCTATCCAAGACTTGCAT TTGCATTTTAGAGTTGAGGCGAAGCGATACCTCAGTAACACTTTCGGGGA AAGATCGCGCCGCCAGCAGTTTGGTCATCGAGGTAGTCGCGTCAGGGCAA GCCGCACCCCCCCCGCCCCCACGCCGTATCCGGGTTTTGCACGCGATGGC GTCGGTCCGCATCGCCAGCTATGGTACGTTTGTGTAAGATCCTGATTGCT GCTACAGCAGTAGGTTTTTTTTTTTCAAATATAATATCATCCCCCCGTCC CGGCATGGTAGGAATGCGAGGGTCTATATGGTCATATGACCACGGCCATG CATGATATCGAGCACACTTCCCCCCCCGTTATGCTATGGGGACAGAGAAA TCAACGACATGTCATGAGGAATTAAAGGGAAGGCGGGCGAGCGTCTCCAC GAAAATACGGTACAGGATAGCAGTATTAATAGTAGTACCAGTAGTAGTAG TATTAATAGTAGTAGTAGTAGCAGTAGTATTATGGTAGACCACCAGGTAA TTTTTTTTATTTGAAGGAGGGTTTTTATGTGCTGCTGAGAGGAGGCGCGC GCTTAATTTTGTTGTTGATGCTACCGCTGTTGCTGCTGCCGCTGCTGACG TTGATGCTTTCCCTGCTACTGCCTGCTGCTGCTGTTGATACTGTACGTGC TGCTTCTGCTTTAAGTCGAGGTCGTGAACGACCATCCCCCTGATTTTCTG ATTTTGTTTCCTTCGCTCTCTCTCTTGCCTCTGAACGATATTTCACTGCC CATTGCACTGGCTGGCCGGCCTGCCCGACTGGCATCGCAGGGGAGCTGAG GATGGTGGACCTGCTCCTGGAGGCGAAGGCTTCGACGAAGATGGCCACCA ACGAGACGCAGAGTTCTTGCCTCCACATCGCGGCCAAAAACAATGCGGTG AGTCGGTATCCTCGAAACCCCCTCTAACCTCCGTAAAGAGTCCAGTACAG GACCACGATTTAGAAATAACTTTTTGAGAACGGGAGACTCACTTTTTGGG GGACCCTAAGAAAATTTACCCAAAGAAATCGTGCTCAGCGGCGAGCGCTA CACCAAATCCTACCAATGAACAAATAGCTTATGTTCAACCCTTCCAGAAA TACAGTCCCGTTTTGGGTACGTACATATTACTTAGAATTTGACTGGTTTG TCCCAAATCCCCCAAAACGGGCCTGCAGTCCTAAAAGTTCAAGGATGGCG TCACAATAAAGGGTTCAAGACTTGCTCAGAGATTTGCGTTTCTTGTTGGC GGGCCCATATTGTAATCGGTCTAAATCTCTTTTCCGTTTCCTCTTGTCAG CAGCAGCAGTAGCAGCAGCAAGAAGTTCGTAGTACGTGGCCGGCAGAAGG GAGCGGGGGGGGGGGGGTCGTTTCTTGCTTTTTTTGCGTACTACTCAGAA GTACCAGTACGAGTGTACGCACAGAGTGTGTCATACTGGTATGCCAATCT GTCCGTATATTTAAAGGAACGTTTGGGTTGCACTACATTGAATACCAAAA CGGTTCTTACATTACTGAAGAGTGATACATGATACTATTAATACTGTAAG TCGTGGTACCTGGCAGTGTGTGAGGTGTTTTTGTTGTTGTTTTTTTTTTT TTTTTCAAGTAGTCAATCGCGGGGGAAATGATGGAAAACGCGCGAACGGT TGTCACGCACCTTGCAAAGTTGAGTATCTACCGATCGGTTGAACTCACAG CTGACGTGCATGTTCTAGTTTTTTTGTAAAATTTATTTGGAAGGCAAAAT ACCGCGAAGCAATCGATTAATTGATTGCCACGCGCGCCCCCCGCCCCGGC CCGCCCCGGAGCCGCCTCGGGCCCGCCCATTGTGCGTGGTGTGCTTCGGG TCGCTGGCTGGGGCGGTCGATTTTGTCCGTGTCGGAGCACAGGTATGCCC ACATGCACCGCTTGCGCCGATTCTCTCCACGAGTATGCACGAGAGCGGTC TATGCCTGTGCTGTATAAACTAGTGATGTTACAGTAGACGGTGCAAGTGC TGTACAAGCGAGTACGTATGTATGCCTGTGATGTAAAAGCTTGCATTGAG ACAGTGGTGGTATGGTGGTATCCAAAGTGTGGGGTAGCTCTCGCTGTTAC CGGGCGGTACGTCTGGTCCGTCTGATGTACAGTAGTACGAAATAGACCCC GATACCCGATACTGCTATCATCAGTACTTCACTTCACGTTGACTCCTTTA GAAGTCCGGGCACTCGGGAGTGATGTTTTTTTTTGTGCTGATATCGCTGC CTTGTTTCTGCTGGTATACACCGTGGTACTCCGCCGTGGGGCGTCTTACC ATCCCCTGCTGCAGGGATGCGAGACATGTGAACGGCAGCATTACGTCCAC GCCCTAAAGAATAGACACAACAACACTCTGATGCTTTCACAGTAAGACGA GGGGTAAAAATCTAAGGATACATATTGTAGGTCACAAAAAAGAAAAGAAA AACGTAGAAGCTGTCGATAGGTTGTTGTCGGCGACACTAAATTTGGAAAT CTGGTCGCTACACGTAGTCGAGTGTGGCGATTTTATCGCTGTTGCAGTGG CCATTTGTCTGTTGTCCATGTTCAGCATTCGCGCTTGCAGTCTGCGCCTG TCTGCACAGTATACGATGTACGACCCAACGGTATGCACATGACGCACAGC AGTGTGAGTGTTGTTCTTTTTGCGGTATGTACCGGTATTCGACCGCTGCT GCCCGACACGATCAGCGGCGCTCTCTTGGCACCCGTGACCGGTAGACCCT GGGCACCCAATAGCAGCGGTGTCCCGAGAGAAAGAGTTGGGGCAATGAGT TTCTGGAGTAATAACGCCCTCAGGGTAAGAAAGCCAGTGCGCCGCGAATC CGTGGCCCATGTACATGACCTTTACCGAAACGAAAGCAGAAGAGAGCAGG TGTGACGGTCACACAGGCAGCCCGCCACACTTGCTCTGTTCTGTCTTTCT TTGGTAAAGGTCATGCAAATAGGCCACGGATTCGCTGCGTACCCTCGGTG TGCCGGCCACAAGGACACCTGTCACAAGGATTACCCTGGGCTGGGTAATC GATCGATATTTTACCCCTGAAAGCTCAGTAGGTAACACCCTCACATTTGG CGTCGACGGCAGAAACACCGGCGATTCTCGTACAGTCTACCATATAAGGG CATCCTACGAAATGGCGGGAGCGATGTATGCACGGCTGTAATTTTTTTTG CCCTGGTTCTCGAAACAACAACGCAGTGAAGCAGCTGCATTATATATGTA TAGGCTCGCGAGGACTGCCCTCCGATTTTTTGCGTACGCTTGCTTCTCTC TTCCTCGCATGTGCCCTGCCCCTGCTTCTACCCCACCCCCCGGCTACGGC CATGCATGAGATCAATTACATATCTCCTATCGAACCCCTCCCCCCCCCCA CCCCAACCAACAGGCAGGAATCGTCCGCAGGCTACTGAGGGTCGACCCCA CGATCGAGGAGAGGGCCACCTCCCAAGGAGACACAGGTATTTTTTTTTTC GTCATGTATACCTGGTATACTGTAGGTATCTCTTTTACTGCGGAAAAAAA TTGTTTTAATTCTGATTCCAAGTAGTCTGTCCCTCAAACGACGGTACAGG TGCAAATCCTTTTATTTATATAGAAGGACGTATTGCATTGTACAGAAACC TAAATCTGAGTCTAGTCCCAAGTTATATTCCCCCGAAACGGAAATGTGGT GCTAAAGGGGTTTACGTATATATACTAACCTTCAGAACTGCACCTCCGTG TTTAGAGACGAAATACTTGAAAATTTGAAGAGAGTGATAATTTGCAGTGA GTGCTGTATTACCGGGGAACAGTAATCAGGACTATGCTTACTACGGGGGA CCATACTGCCTGCAGTAAATGGGACCAAATGTTGCTAGTATTAATAGGGA AATATATAGGTTTTTGTGTGTGCTGTAGGTGCTATTTACTATGGTCCTCC GTATTAGTAAAAATACTGCTGTTCTATATAGTTTTTTGCCCATAAGGTGG TTCCTGATTTTTGTGTTCCCCCCCAATAGTATGTACATGGGTTGAAGTGC AAAGAGGATGGTGGCAGGGGCAGTTTTTCCTGCCTACCTTTTTTACTTTC GAGGCGCCGGAGGGGAGGTATAGTACGGCTTTTTGGCGCGCTGTTGTCGA CGGAAAGAAGTGCTGCCCGCTTCGAATGGGAGAGACGGGGCAACCGTACA GAGTATTATTTATTACGTTCGTTGAACAAACACGCAACGAAAAGAGTGCG GCAAACTGAGCGTTCCACATTCAGACAGATAATCGATTCCCGCTTTTGAT GATCTAGATCCTTCAGGGCAGATGGATAGATCCCTGATCTGTTCTGATCT GTCTCACGTTGCCGGATGGGAGCCATGTAGCCTGCCTGATCCATGCAGGG CATATTTCTTGGGTTGGATATGTACTATACAGTTCCTGCACAACATGTCA TAGAACGGCAGGTTAGTATGTACTGTAGATTATCTATATCTGTAGATGAT CTATATCTGTAGATGATCTGTCTGTAGATGATCCATCTGTAGATGATCTG CCTGTAGATGATCTGTGTGTCCGACGTGTGGACATTCCTAACCATATCGT TAGTGGTAGATGATCCCGGTAGCGCTGTATGTGTGCTCTTGGGCAGCTGC CGCCGCGTTGGCCTTCCCTCTGGATGATAGGGGTACGAGTACTGCATGTA CAGTAGTATGTAAAGTGAAATATTCGTCGAAACGTGAAAATTGCAGTGTT TGCCCCCTCGACCGATAGTGATGAAAACTTGTTAAAAACATCAGCGCTAT TGCTGCAGCTGCTATTACGGAGGACCATGGTAAATGGGACCAAATTTTGT TGGTAAAAATAGGGAAACATATAGGTTTTTGTGTGCACCGTAGGTGTTAT TTGCTATGGTCCTCCGTAACAGCTGGCCCGGCAGCTGCGGAAGACGCCTT AGGCTTCTCGTGCAAGTAAGTTTGTCATATCTGCCCCGAGGTGCGCTCGC ACTTGTACGCTGTGAATTTATCTAAGCATGGCCTACTACCGAGGGGTTGC GATCACGCTTTTGAGACTTTTGAACAAGCCGCTCTCTGTTCACAAAACAC GCACAAAATAGGTCTTGAAACTCTACAAGTTTGATCGTACAAAAACGGAA TTTTTGTTCTGAAATATAGGTACGATTTTTGTATGAATATTCACATACAA ACGGTCCTTACATTCGGGACCGAGTGGTATGCCGTACAACGTCTCAATCT ACCTATTATTTTCACGAGCAGACTGGTAGAATTTAGAATTTCTCATTTTG ATCTACGTAGTTCCATCCGACCCGTCGCCCCGTCCTTCCCCCGTCCCCGT CCCCGTCCCCTGCCCGCCCCCCCCCGCCTCCGCATTTGGCCCGCGTCAAC AGCGCTGATGGTTGCATGCCTTTCGGCGGTGGAGACAGAGGCAAGTTCCG AAACCATAGCAGCCCTTCTGGAGCCCCATTCCGACAAGATCAGCAGCGGC GGTAGCACAGCCACCAGCACCAGCTGGGGCGGCGGCGGCAGCAGCGGCAG CGGCAGCGGCAGCAAGCTTTCTCGGAAGTTTGCCTTGGGACCGGACGACC CCAGGCTGCTGTCGCGCAACCGCCACGGGCACACGGCCCTGCACTGCGCG GCGTTCGCGCAGTCGCCGACCGCGGTGCGCCTGCTCCTCGAGGCCGGCGC CGACTGCACGGTGGGGGACAAGGCCGGGCGAACGGCGGTAGATGTGGCGC TTAACCTGGAGGGCAAGAAGACAGCCCTGCGGGAGGGGCCGCGGGGGGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12286:222..7521-

>mRNA_M-pyrifera_M_contig12286.4699.1 ID=mRNA_M-pyrifera_M_contig12286.4699.1|Name=mRNA_M-pyrifera_M_contig12286.4699.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1422bp|location=Sequence derived from alignment at M-pyrifera_M_contig12286:222..7521- (Macrocystis pyrifera P11B4 male)
ATGAGCTTGAGCTTGCTGGAAGCGGTCCACCGGGTTAACGTACCCCGCGT
AGCTGCACTTCTGTGCCGAGGCGCCGATGTCAACATCACGGATGCTCAGG
GCGTCACCCCTCTCATCATAGCCTGCGAAAGAGATGAGCTTGAGCTTGCT
GGAAGCGGTCCACCGGGTTAACGTACCCCGCGTAGCTGCACTTCTGTGCC
GAGGCGCCGATGTCAACATCACGGATGCTCAGGGCGTCACCCCTCTCATC
ATAGCCTGCGAAAGAGGGGAGCTGAGGATGGTGGACCTGCTCCTGGAGGC
GAAGGCTTCGACGAAGATGGCCACCAACGAGACGCAGAGTTCTTGCCTCC
ACATCGCGGCCAAAAACAATGCGGTGAGGGAGCTGAGGATGGTGGACCTG
CTCCTGGAGGCGAAGGCTTCGACGAAGATGGCCACCAACGAGACGCAGAG
TTCTTGCCTCCACATCGCGGCCAAAAACAATGCGGTGAGAATCGTCCGCA
GGCTACTGAGGGTCGACCCCACGATCGAGGAGAGGGCCACCTCCCAAGGA
GACACAGGAATCGTCCGCAGGCTACTGAGGGTCGACCCCACGATCGAGGA
GAGGGCCACCTCCCAAGGAGACACAGCGCTGATGGTTGCATGCCTTTCGG
CGGTGGAGACAGAGGCAAGTTCCGAAACCATAGCAGCCCTTCTGGAGCCC
CATTCCGACAAGATCAGCAGCGGCGGTAGCACAGCCACCAGCACCAGCTG
GGGCGGCGGCGGCAGCAGCGGCAGCGGCAGCGGCAGCAAGCTTTCTCGGA
AGTTTGCCTTGGGACCGGACGACCCCAGGCTGCTGTCGCGCAACCGCCAC
GGGCACACGGCCCTGCACTGCGCGGCGTTCGCGCAGTCGCCGACCGCGGT
GCGCCTGCTCCTCGAGGCCGGCGCCGACTGCACGGTGGGGGACAAGGCCG
GGCGAACGGCGGTAGATGTGGCGCTTAACCTGGAGGGCAAGAAGACAGCC
CTGCGGGAGGGGCCGCGGGGGGGCCGCTGATGGTTGCATGCCTTTCGGCG
GTGGAGACAGAGGCAAGTTCCGAAACCATAGCAGCCCTTCTGGAGCCCCA
TTCCGACAAGATCAGCAGCGGCGGTAGCACAGCCACCAGCACCAGCTGGG
GCGGCGGCGGCAGCAGCGGCAGCGGCAGCGGCAGCAAGCTTTCTCGGAAG
TTTGCCTTGGGACCGGACGACCCCAGGCTGCTGTCGCGCAACCGCCACGG
GCACACGGCCCTGCACTGCGCGGCGTTCGCGCAGTCGCCGACCGCGGTGC
GCCTGCTCCTCGAGGCCGGCGCCGACTGCACGGTGGGGGACAAGGCCGGG
CGAACGGCGGTAGATGTGGCGCTTAACCTGGAGGGCAAGAAGACAGCCCT
GCGGGAGGGGCCGCGGGGGGGC
back to top