mRNA_M-pyrifera_M_contig122841.4698.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122841.4698.1
Unique NamemRNA_M-pyrifera_M_contig122841.4698.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122841.4698.1 vs. uniprot
Match: A0A1R0H572_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H572_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 6.560e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   46 LRVGGARTSEWLARRGMVAEKYKKCCPCCGKEVPETLKHIMLRCRRW 186
            +++G  RT + L+    + EK+KK CP C  +VPET+ HI+L C RW
Sbjct:    1 MQMGTLRTVQRLSNMKFLDEKFKKNCPICKIDVPETVDHILLNCSRW 47
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BLAST of mRNA_M-pyrifera_M_contig122841.4698.1 vs. uniprot
Match: A0A2T9YT82_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YT82_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 1.500e-5
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   67 TSEWLARRGMVAEKYKKCCPCCGKEVPETLKHIMLRCRRWKKGREEMLGSMI 222
            ++E L +  ++++ YKK CPCC    PET++HI+L C RW   R E +   I
Sbjct:  592 STEQLEKSQLISKLYKKKCPCCNANFPETIEHILLGCSRWAAIRAETIRKFI 643
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122841.4698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1R0H572_9FUNG6.560e-644.68Uncharacterized protein (Fragment) n=1 Tax=Smittiu... [more]
A0A2T9YT82_9FUNG1.500e-540.38Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122841contigM-pyrifera_M_contig122841:283..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.4335165-CDS-M-pyrifera_M_contig122841:282..5041622815747.4335165-CDS-M-pyrifera_M_contig122841:282..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122841 283..504 +
1692277550.402784-CDS-M-pyrifera_M_contig122841:282..5041692277550.402784-CDS-M-pyrifera_M_contig122841:282..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122841 283..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122841.4698.1prot_M-pyrifera_M_contig122841.4698.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122841 283..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122841.4698.1

>prot_M-pyrifera_M_contig122841.4698.1 ID=prot_M-pyrifera_M_contig122841.4698.1|Name=mRNA_M-pyrifera_M_contig122841.4698.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
AGWAELATGLREVARLRVGGARTSEWLARRGMVAEKYKKCCPCCGKEVPE
TLKHIMLRCRRWKKGREEMLGSMI
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mRNA from alignment at M-pyrifera_M_contig122841:283..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122841.4698.1 ID=mRNA_M-pyrifera_M_contig122841.4698.1|Name=mRNA_M-pyrifera_M_contig122841.4698.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig122841:283..504+ (Macrocystis pyrifera P11B4 male)
GCGGGGTGGGCGGAGTTAGCCACGGGGTTACGCGAAGTGGCAAGATTGCG
GGTTGGAGGGGCCCGTACCTCTGAGTGGTTGGCACGAAGAGGAATGGTAG
CGGAGAAGTACAAGAAGTGCTGCCCGTGCTGCGGGAAGGAGGTGCCCGAG
ACGTTGAAGCACATCATGCTACGGTGCCGCAGGTGGAAGAAAGGAAGGGA
GGAGATGTTGGGATCGATGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122841:283..504+

>mRNA_M-pyrifera_M_contig122841.4698.1 ID=mRNA_M-pyrifera_M_contig122841.4698.1|Name=mRNA_M-pyrifera_M_contig122841.4698.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig122841:283..504+ (Macrocystis pyrifera P11B4 male)
GCGGGGTGGGCGGAGTTAGCCACGGGGTTACGCGAAGTGGCAAGATTGCG
GGTTGGAGGGGCCCGTACCTCTGAGTGGTTGGCACGAAGAGGAATGGTAG
CGGAGAAGTACAAGAAGTGCTGCCCGTGCTGCGGGAAGGAGGTGCCCGAG
ACGTTGAAGCACATCATGCTACGGTGCCGCAGGTGGAAGAAAGGAAGGGA
GGAGATGTTGGGATCGATGATTGCGGGGTGGGCGGAGTTAGCCACGGGGT
TACGCGAAGTGGCAAGATTGCGGGTTGGAGGGGCCCGTACCTCTGAGTGG
TTGGCACGAAGAGGAATGGTAGCGGAGAAGTACAAGAAGTGCTGCCCGTG
CTGCGGGAAGGAGGTGCCCGAGACGTTGAAGCACATCATGCTACGGTGCC
GCAGGTGGAAGAAAGGAAGGGAGGAGATGTTGGGATCGATGATT
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