mRNA_M-pyrifera_M_contig122839.4696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122839.4696.1
Unique NamemRNA_M-pyrifera_M_contig122839.4696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A8H8A0H6_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8A0H6_9FUNG)

HSP 1 Score: 119 bits (299), Expect = 4.660e-32
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 SGQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            SG   AIKVYKTSIL FKDRDRYVTGEYRFR GYS+RNPRKMV++WAEKEMRNL+RL +A IPCPE  LLR HVLL+
Sbjct:  119 SGVHRAIKVYKTSILTFKDRDRYVTGEYRFRHGYSKRNPRKMVKVWAEKEMRNLKRLHSAGIPCPEPLLLRMHVLLM 195
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A372Q075_9GLOM (Non-specific serine/threonine protein kinase n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372Q075_9GLOM)

HSP 1 Score: 114 bits (284), Expect = 1.630e-30
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 GQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            G   AIKVYKTSILVFKDRDRYVTGE+RFR GYS+ NPRKMV+LWAEKEMRNL+RL  A IPCPE  +LR HVL++
Sbjct:   60 GNHRAIKVYKTSILVFKDRDRYVTGEFRFRHGYSKHNPRKMVKLWAEKEMRNLKRLWQAGIPCPEPLVLRLHVLVM 135
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A6A4JSC5_APOLU (Non-specific serine/threonine protein kinase n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JSC5_APOLU)

HSP 1 Score: 119 bits (297), Expect = 2.800e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 SGQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            S QD AIKVYKTSILVFKDRDRYVTGE+RFR GY + NPRKMVRLWAEKEMRNL R+KAA +P PE  LLRSHVL++
Sbjct:   46 SPQDYAIKVYKTSILVFKDRDRYVTGEFRFRHGYCKHNPRKMVRLWAEKEMRNLSRMKAAGLPVPEPILLRSHVLVM 122
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A1Y3N2K0_PIRSE (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N2K0_PIRSE)

HSP 1 Score: 114 bits (286), Expect = 3.720e-30
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    4 GQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            G+  AIK+YKTSILVFKDRDRYV+GEYRFR GYS+ NPRKMV++WAEKEMRNL+RL  A IPCPE  +LR HVLL+
Sbjct:   52 GEHRAIKIYKTSILVFKDRDRYVSGEYRFRNGYSKHNPRKMVKVWAEKEMRNLKRLWNAGIPCPEPLMLRMHVLLM 127
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A433A2P6_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A2P6_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 4.780e-30
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 GQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            GQ  AIKVYKTSIL FKDRDRYVTGE+RFR GY++ NPRKMV++WAEKEMRNL+RL  A IPCPE  +LR HVL++
Sbjct:   60 GQHRAIKVYKTSILTFKDRDRYVTGEFRFRHGYNKHNPRKMVKVWAEKEMRNLKRLHQAGIPCPEPMVLRMHVLVM 135
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A261Y8K1_9FUNG (Serine/threonine-protein kinase RIO1 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y8K1_9FUNG)

HSP 1 Score: 119 bits (298), Expect = 8.680e-30
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    4 GQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            GQ  A+KVYKTSIL FKDRDRYVTGEYRFR GYS+ NPRKMV+LWAEKEMRNL+RL +A IPCPE  LLR HVLL+
Sbjct:  191 GQHRAVKVYKTSILTFKDRDRYVTGEYRFRHGYSKSNPRKMVKLWAEKEMRNLKRLHSAGIPCPEPLLLRMHVLLM 266
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A7S3MB82_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB82_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.130e-29
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 SGQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            +G + A+K++KTSILVFKDRD+YV+GEYRFR GY + NPRKMVR WAEKEMRNL+RL AA IP PE HLL+SHVL++
Sbjct:  127 NGLEYAVKIFKTSILVFKDRDKYVSGEYRFRNGYCKSNPRKMVRTWAEKEMRNLKRLNAAGIPSPEPHLLKSHVLVM 203
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BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A0A9X1B2_LYGHE (Serine/threonine-protein kinase RIO1 n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X1B2_LYGHE)

HSP 1 Score: 119 bits (297), Expect = 1.180e-29
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 SGQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            S QD AIKVYKTSILVFKDRDRYVTGE+RFR GY + NPRKMVRLWAEKEMRNL R+KAA +P PE  LLRSHVL++
Sbjct:  200 SPQDYAIKVYKTSILVFKDRDRYVTGEFRFRHGYCKHNPRKMVRLWAEKEMRNLARMKAAGLPVPEPVLLRSHVLVM 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A7S2BSI6_9EUKA (Serine/threonine-protein kinase RIO1 (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BSI6_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 1.410e-29
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 GQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
             ++ A+KVYKTSIL+FKDRDRYV+GE+RFR GY + NPRKMVR+WAEKEMRN RRL  A +PCP VHLLR HVLL+
Sbjct:  126 SEEYAVKVYKTSILIFKDRDRYVSGEFRFRHGYCKSNPRKMVRMWAEKEMRNYRRLALANVPCPSVHLLREHVLLM 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Match: A0A482UMH1_9ARCH (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UMH1_9ARCH)

HSP 1 Score: 113 bits (283), Expect = 2.130e-29
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 GQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKEMRNLRRLKAARIPCPEVHLLRSHVLLL 231
            G +VAIK+YKTSILVFKDRDRYV+GEYRF  GY++ NPRKMV+LWAEKE RNL+RL AA IPCP   LLR H+LL+
Sbjct:   45 GGEVAIKIYKTSILVFKDRDRYVSGEYRFASGYAKNNPRKMVKLWAEKETRNLKRLNAAGIPCPNPILLRMHLLLM 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122839.4696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H8A0H6_9FUNG4.660e-3279.22Non-specific serine/threonine protein kinase n=1 T... [more]
A0A372Q075_9GLOM1.630e-3076.32Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A4JSC5_APOLU2.800e-3079.22Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1Y3N2K0_PIRSE3.720e-3075.00Non-specific serine/threonine protein kinase (Frag... [more]
A0A433A2P6_9FUNG4.780e-3073.68Non-specific serine/threonine protein kinase n=1 T... [more]
A0A261Y8K1_9FUNG8.680e-3078.95Serine/threonine-protein kinase RIO1 n=1 Tax=Bifig... [more]
A0A7S3MB82_9STRA1.130e-2971.43Non-specific serine/threonine protein kinase (Frag... [more]
A0A0A9X1B2_LYGHE1.180e-2979.22Serine/threonine-protein kinase RIO1 n=4 Tax=Lygus... [more]
A0A7S2BSI6_9EUKA1.410e-2972.37Serine/threonine-protein kinase RIO1 (Fragment) n=... [more]
A0A482UMH1_9ARCH2.130e-2973.68Non-specific serine/threonine protein kinase (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122839contigM-pyrifera_M_contig122839:6..236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue5.7e-25
Seed eggNOG ortholog5762.XP_002671576.1
Preferred nameRIOK1
KEGG koko:K07178
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001932,GO:0001933,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008406,GO:0009791,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0014013,GO:0014015,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030490,GO:0030684,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036093,GO:0036211,GO:0040026,GO:0040028,GO:0042127,GO:0042254,GO:0042274,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045595,GO:0045597,GO:0045935,GO:0045936,GO:0046483,GO:0046578,GO:0046579,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051056,GO:0051057,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1990234,GO:1990904,GO:2000026,GO:2000232,GO:2000234
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsCOG1718@1,KOG2270@2759
EC2.7.11.1
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.3602417-CDS-M-pyrifera_M_contig122839:5..2361622815747.3602417-CDS-M-pyrifera_M_contig122839:5..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122839 6..236 -
1692277550.367689-CDS-M-pyrifera_M_contig122839:5..2361692277550.367689-CDS-M-pyrifera_M_contig122839:5..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122839 6..236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122839.4696.1prot_M-pyrifera_M_contig122839.4696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122839 6..236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122839.4696.1

>prot_M-pyrifera_M_contig122839.4696.1 ID=prot_M-pyrifera_M_contig122839.4696.1|Name=mRNA_M-pyrifera_M_contig122839.4696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
SGQDVAIKVYKTSILVFKDRDRYVTGEYRFRQGYSRRNPRKMVRLWAEKE
MRNLRRLKAARIPCPEVHLLRSHVLLL
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mRNA from alignment at M-pyrifera_M_contig122839:6..236-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122839.4696.1 ID=mRNA_M-pyrifera_M_contig122839.4696.1|Name=mRNA_M-pyrifera_M_contig122839.4696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig122839:6..236- (Macrocystis pyrifera P11B4 male)
TCTGGTCAGGATGTTGCGATCAAGGTGTACAAGACATCAATTTTGGTGTT
TAAGGACCGTGACCGGTACGTGACTGGAGAGTATCGGTTTCGGCAGGGGT
ACTCGCGTCGGAATCCTCGCAAGATGGTTCGTTTGTGGGCGGAGAAGGAG
ATGCGGAATTTGCGTCGGCTCAAGGCGGCTCGCATTCCCTGCCCCGAGGT
GCATTTGCTTCGGAGCCACGTGCTGTTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122839:6..236-

>mRNA_M-pyrifera_M_contig122839.4696.1 ID=mRNA_M-pyrifera_M_contig122839.4696.1|Name=mRNA_M-pyrifera_M_contig122839.4696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig122839:6..236- (Macrocystis pyrifera P11B4 male)
TCTGGTCAGGATGTTGCGATCAAGGTGTACAAGACATCAATTTTGGTGTT
TAAGGACCGTGACCGGTACGTGACTGGAGAGTATCGGTTTCGGCAGGGGT
ACTCGCGTCGGAATCCTCGCAAGATGGTTCGTTTGTGGGCGGAGAAGGAG
ATGCGGAATTTGCGTCGGCTCAAGGCGGCTCGCATTCCCTGCCCCGAGGT
GCATTTGCTTCGGAGCCACGTGCTGTTGCTGTCTGGTCAGGATGTTGCGA
TCAAGGTGTACAAGACATCAATTTTGGTGTTTAAGGACCGTGACCGGTAC
GTGACTGGAGAGTATCGGTTTCGGCAGGGGTACTCGCGTCGGAATCCTCG
CAAGATGGTTCGTTTGTGGGCGGAGAAGGAGATGCGGAATTTGCGTCGGC
TCAAGGCGGCTCGCATTCCCTGCCCCGAGGTGCATTTGCTTCGGAGCCAC
GTGCTGTTGCTG
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