mRNA_M-pyrifera_M_contig122833.4693.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122833.4693.1
Unique NamemRNA_M-pyrifera_M_contig122833.4693.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A0A5A8EKG6_CAFRO (AB hydrolase-1 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EKG6_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 9.470e-9
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 1
Query:   49 LVVLHGHSGSSAHWECIADALV------------HEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDLCLECLGGWMQ 246
            +VV+HGHS  SA ++C+ D ++              A ++LLD+PGWGRSPAP    + R    +V      L GW++
Sbjct:  112 IVVVHGHSSGSALFQCVVDDVITGLGAPGVLHKGQRAVVHLLDMPGWGRSPAPPAFAALREQHAIVSASASMLRGWLR 189          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A0A1H3Z628_9BURK (Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax=Acidovorax TaxID=12916 RepID=A0A1H3Z628_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 4.230e-6
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   13 HIRGSKKTRSRPLVVLHGHSGSSAHWECIADALVHEA-DLYLLDLPGWGRSPAPV 174
            H+ G  +  +RPLV+LHG SGS  HW    DALV     L++ DLPG+G S AP+
Sbjct:   32 HVWGEARPNARPLVLLHGGSGSWTHWVRNIDALVAAGRQLWVPDLPGFGESAAPL 86          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A0A495V4F0_9GAMM (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Thiocapsa rosea TaxID=69360 RepID=A0A495V4F0_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 6.070e-6
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   34 TRSRPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDLCLE 225
            T   PL+++HG  GSS HW+  A+ L    DLY LDLPG G +PA    T    P+ + DL ++
Sbjct:   23 TGKPPLLLIHGWGGSSRHWQHTAEHLSDIRDLYALDLPGHGDTPARPGATG---PETLADLVID 83          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: UPI0019408AF3 (alpha/beta fold hydrolase n=1 Tax=Dactylosporangium siamense TaxID=685454 RepID=UPI0019408AF3)

HSP 1 Score: 51.6 bits (122), Expect = 1.040e-5
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 1
Query:   13 HIRGSKKTRSRPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVE 177
            H+   +K    PLV++HG       WE + D L    D+  +DLPG+GRSPAP E
Sbjct:   11 HLHSVRKGSGAPLVLIHGIGHHWRAWEPVIDLLAEHHDVIAIDLPGFGRSPAPAE 65          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A0A1H2UL45_THIRO (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Thiocapsa roseopersicina TaxID=1058 RepID=A0A1H2UL45_THIRO)

HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5
Identity = 27/63 (42.86%), Postives = 34/63 (53.97%), Query Frame = 1
Query:   46 PLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDLCLECLG 234
            PLV++HG  GSS HW+   + L    DLY LDLPG G +PA    T      R+V    + LG
Sbjct:   27 PLVLIHGWGGSSGHWQHTPEHLSGVRDLYALDLPGHGETPARPGATGPETSARLVIAFADRLG 89          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A0A3L6ZZ79_9HYPH (Alpha/beta fold hydrolase n=1 Tax=Xanthobacter tagetidis TaxID=60216 RepID=A0A3L6ZZ79_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 1.490e-5
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 1
Query:   43 RPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDLCLECLGGWM 243
            RPLV+LHG SGS  HW    D L    ++  LDLPG+G +P P      R+P+  +    E L   M
Sbjct:   28 RPLVLLHGGSGSHTHWIANIDRLAQGFEVVALDLPGYGDAPRPAS----RDPETYIGSLAEDLAAAM 90          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A7NIU9_ROSCS (Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) TaxID=383372 RepID=A7NIU9_ROSCS)

HSP 1 Score: 50.8 bits (120), Expect = 1.990e-5
Identity = 25/60 (41.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query:   37 RSRPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDL 216
            R  PLV+LHG +GSSA W+ +    +    +  +DLPG GR+PAPV  T    P    D+
Sbjct:   18 RGDPLVLLHGFTGSSATWDEVVPHFMQRFRVIRIDLPGHGRTPAPVGPTRGALPSVAADI 77          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: A0A3S5JUG0_9GAMM (Malonyl-[acyl-carrier protein] O-methyltransferase n=2 Tax=Cellvibrionales TaxID=1706369 RepID=A0A3S5JUG0_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 2.330e-5
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   22 GSKKTRSRPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELT 183
            G  K  S P+V++HG   +S  W+ + + L   AD+Y +DLPG+G SPA  E T
Sbjct:   27 GPMKLHSDPIVLVHGWGANSEIWQSLPEKLSEYADVYTIDLPGFGESPAIEEYT 80          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: UPI0007C573C5 (alpha/beta fold hydrolase n=1 Tax=Dactylosporangium aurantiacum TaxID=35754 RepID=UPI0007C573C5)

HSP 1 Score: 50.4 bits (119), Expect = 2.810e-5
Identity = 25/75 (33.33%), Postives = 37/75 (49.33%), Query Frame = 1
Query:   16 IRGSKKTRSRPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDLCLECLGGW 240
            I   ++    PLV++HG       WE + D L    D+  +DLPG+GRSPAP +       +  +   +E L GW
Sbjct:    8 IHSVRRGAGEPLVLIHGIGHHWRAWEPVIDLLAEHHDVIAIDLPGFGRSPAPAQ-------NHGMPSAVEALAGW 75          
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Match: UPI001E2BADD3 (alpha/beta fold hydrolase n=1 Tax=Thiocapsa bogorovii TaxID=521689 RepID=UPI001E2BADD3)

HSP 1 Score: 48.5 bits (114), Expect = 4.370e-5
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:   46 PLVVLHGHSGSSAHWECIADALVHEADLYLLDLPGWGRSPAPVELTSCRNPDRVVDLCLE 225
            PL+++HG  GSS HW+  A  L    DLY LDLPG G +PA    +    P+ +  L ++
Sbjct:   27 PLLLIHGWGGSSRHWQQTAADLSDIRDLYALDLPGHGETPAR---SGAAGPEAMAGLVID 83          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122833.4693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A5A8EKG6_CAFRO9.470e-935.90AB hydrolase-1 domain-containing protein n=3 Tax=C... [more]
A0A1H3Z628_9BURK4.230e-649.09Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax... [more]
A0A495V4F0_9GAMM6.070e-642.19Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]
UPI0019408AF31.040e-541.82alpha/beta fold hydrolase n=1 Tax=Dactylosporangiu... [more]
A0A1H2UL45_THIRO1.140e-542.86Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]
A0A3L6ZZ79_9HYPH1.490e-540.30Alpha/beta fold hydrolase n=1 Tax=Xanthobacter tag... [more]
A7NIU9_ROSCS1.990e-541.67Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1... [more]
A0A3S5JUG0_9GAMM2.330e-542.59Malonyl-[acyl-carrier protein] O-methyltransferase... [more]
UPI0007C573C52.810e-533.33alpha/beta fold hydrolase n=1 Tax=Dactylosporangiu... [more]
UPI001E2BADD34.370e-540.00alpha/beta fold hydrolase n=1 Tax=Thiocapsa bogoro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122833contigM-pyrifera_M_contig122833:208..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.2591767-CDS-M-pyrifera_M_contig122833:207..4651622815747.2591767-CDS-M-pyrifera_M_contig122833:207..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122833 208..465 -
1692277550.3199527-CDS-M-pyrifera_M_contig122833:207..4651692277550.3199527-CDS-M-pyrifera_M_contig122833:207..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122833 208..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122833.4693.1prot_M-pyrifera_M_contig122833.4693.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122833 208..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122833.4693.1

>prot_M-pyrifera_M_contig122833.4693.1 ID=prot_M-pyrifera_M_contig122833.4693.1|Name=mRNA_M-pyrifera_M_contig122833.4693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
VHSLHIRGSKKTRSRPLVVLHGHSGSSAHWECIADALVHEADLYLLDLPG
WGRSPAPVELTSCRNPDRVVDLCLECLGGWMQAHHM
back to top

mRNA from alignment at M-pyrifera_M_contig122833:208..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122833.4693.1 ID=mRNA_M-pyrifera_M_contig122833.4693.1|Name=mRNA_M-pyrifera_M_contig122833.4693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig122833:208..465- (Macrocystis pyrifera P11B4 male)
GTGCATAGTTTGCATATTCGTGGATCAAAGAAAACAAGGTCTAGGCCTCT CGTCGTGTTGCATGGACATAGTGGAAGTAGTGCACATTGGGAATGCATTG CAGATGCCCTTGTACATGAAGCTGACTTGTATCTCCTCGATCTCCCTGGT TGGGGAAGATCTCCTGCTCCGGTAGAGCTGACAAGTTGCCGCAACCCAGA CAGAGTAGTGGATCTTTGCTTGGAATGTCTTGGTGGTTGGATGCAAGCGC ACCACATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122833:208..465-

>mRNA_M-pyrifera_M_contig122833.4693.1 ID=mRNA_M-pyrifera_M_contig122833.4693.1|Name=mRNA_M-pyrifera_M_contig122833.4693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig122833:208..465- (Macrocystis pyrifera P11B4 male)
GTGCATAGTTTGCATATTCGTGGATCAAAGAAAACAAGGTCTAGGCCTCT
CGTCGTGTTGCATGGACATAGTGGAAGTAGTGCACATTGGGAATGCATTG
CAGATGCCCTTGTACATGAAGCTGACTTGTATCTCCTCGATCTCCCTGGT
TGGGGAAGATCTCCTGCTCCGGTAGAGCTGACAAGTTGCCGCAACCCAGA
CAGAGTAGTGGATCTTTGCTTGGAATGTCTTGGTGGTTGGATGCAAGCGC
ACCACATGGTGCATAGTTTGCATATTCGTGGATCAAAGAAAACAAGGTCT
AGGCCTCTCGTCGTGTTGCATGGACATAGTGGAAGTAGTGCACATTGGGA
ATGCATTGCAGATGCCCTTGTACATGAAGCTGACTTGTATCTCCTCGATC
TCCCTGGTTGGGGAAGATCTCCTGCTCCGGTAGAGCTGACAAGTTGCCGC
AACCCAGACAGAGTAGTGGATCTTTGCTTGGAATGTCTTGGTGGTTGGAT
GCAAGCGCACCACATG
back to top