mRNA_M-pyrifera_M_contig12283.4692.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12283.4692.1
Unique NamemRNA_M-pyrifera_M_contig12283.4692.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12283.4692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12283contigM-pyrifera_M_contig12283:5743..6318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12283.4692.1prot_M-pyrifera_M_contig12283.4692.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12283 5748..6200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.1623325-UTR-M-pyrifera_M_contig12283:5742..57471622815747.1623325-UTR-M-pyrifera_M_contig12283:5742..5747Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12283 5743..5747 +
1692277550.2743154-UTR-M-pyrifera_M_contig12283:5742..57471692277550.2743154-UTR-M-pyrifera_M_contig12283:5742..5747Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12283 5743..5747 +
1622815747.187115-UTR-M-pyrifera_M_contig12283:6200..63181622815747.187115-UTR-M-pyrifera_M_contig12283:6200..6318Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12283 6201..6318 +
1692277550.2908423-UTR-M-pyrifera_M_contig12283:6200..63181692277550.2908423-UTR-M-pyrifera_M_contig12283:6200..6318Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12283 6201..6318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.1758585-CDS-M-pyrifera_M_contig12283:5747..62001622815747.1758585-CDS-M-pyrifera_M_contig12283:5747..6200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12283 5748..6200 +
1692277550.2829676-CDS-M-pyrifera_M_contig12283:5747..62001692277550.2829676-CDS-M-pyrifera_M_contig12283:5747..6200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12283 5748..6200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12283.4692.1

>prot_M-pyrifera_M_contig12283.4692.1 ID=prot_M-pyrifera_M_contig12283.4692.1|Name=mRNA_M-pyrifera_M_contig12283.4692.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MHIRVNYISIIFVRQCQVHVDSSRKGPALRAERSALSQNHKLVETRSRWG
GIKRLRTALKPRLTTRHSRLASPCTHTSDNARRWSPASTSICLNPSHNRS
RFHSFQQHLEFGPKRSTRRRRMLVCGPSPSSSLALPFPKLGPPAELQTYA
*
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mRNA from alignment at M-pyrifera_M_contig12283:5743..6318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12283.4692.1 ID=mRNA_M-pyrifera_M_contig12283.4692.1|Name=mRNA_M-pyrifera_M_contig12283.4692.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig12283:5743..6318+ (Macrocystis pyrifera P11B4 male)
GGGGAATGCACATCCGTGTTAACTACATTAGTATTATCTTTGTACGACAA
TGCCAAGTACACGTCGACAGCAGCAGGAAAGGCCCTGCGCTGCGTGCCGA
AAGGAGCGCTCTTTCGCAAAATCACAAACTTGTCGAGACTCGGTCACGGT
GGGGAGGCATAAAAAGGTTGCGGACGGCACTCAAACCTCGCCTGACCACC
CGCCACTCACGCCTGGCATCACCCTGCACCCACACCTCTGACAACGCACG
GCGGTGGTCGCCAGCGAGCACCTCAATCTGCCTCAACCCCTCCCATAACC
GATCCCGCTTCCATTCGTTCCAACAACATTTGGAGTTCGGGCCGAAGCGA
AGCACACGCCGACGACGGATGTTGGTATGCGGACCGAGCCCGTCCTCTTC
CCTCGCACTTCCCTTCCCGAAGCTTGGGCCTCCGGCGGAACTCCAAACCT
ACGCGTAGCACCGCAACGTTCACACACCATCCGCAACACAAAAAGCCTCC
ACAGCAAAACGCCGACACACTCGAAAAATGAGACGAAGCATTTCGACCAC
CTCGGGGGCGAGCGGGTCGTTCATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12283:5743..6318+

>mRNA_M-pyrifera_M_contig12283.4692.1 ID=mRNA_M-pyrifera_M_contig12283.4692.1|Name=mRNA_M-pyrifera_M_contig12283.4692.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig12283:5743..6318+ (Macrocystis pyrifera P11B4 male)
ATGCACATCCGTGTTAACTACATTAGTATTATCTTTGTACGACAATGCCA
AGTACACGTCGACAGCAGCAGGAAAGGCCCTGCGCTGCGTGCCGAAAGGA
GCGCTCTTTCGCAAAATCACAAACTTGTCGAGACTCGGTCACGGTGGGGA
GGCATAAAAAGGTTGCGGACGGCACTCAAACCTCGCCTGACCACCCGCCA
CTCACGCCTGGCATCACCCTGCACCCACACCTCTGACAACGCACGGCGGT
GGTCGCCAGCGAGCACCTCAATCTGCCTCAACCCCTCCCATAACCGATCC
CGCTTCCATTCGTTCCAACAACATTTGGAGTTCGGGCCGAAGCGAAGCAC
ACGCCGACGACGGATGTTGGTATGCGGACCGAGCCCGTCCTCTTCCCTCG
CACTTCCCTTCCCGAAGCTTGGGCCTCCGGCGGAACTCCAAACCTACGCG
TAGATGCACATCCGTGTTAACTACATTAGTATTATCTTTGTACGACAATG
CCAAGTACACGTCGACAGCAGCAGGAAAGGCCCTGCGCTGCGTGCCGAAA
GGAGCGCTCTTTCGCAAAATCACAAACTTGTCGAGACTCGGTCACGGTGG
GGAGGCATAAAAAGGTTGCGGACGGCACTCAAACCTCGCCTGACCACCCG
CCACTCACGCCTGGCATCACCCTGCACCCACACCTCTGACAACGCACGGC
GGTGGTCGCCAGCGAGCACCTCAATCTGCCTCAACCCCTCCCATAACCGA
TCCCGCTTCCATTCGTTCCAACAACATTTGGAGTTCGGGCCGAAGCGAAG
CACACGCCGACGACGGATGTTGGTATGCGGACCGAGCCCGTCCTCTTCCC
TCGCACTTCCCTTCCCGAAGCTTGGGCCTCCGGCGGAACTCCAAACCTAC
GCGTAG
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