mRNA_M-pyrifera_M_contig12283.4691.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12283.4691.1
Unique NamemRNA_M-pyrifera_M_contig12283.4691.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A6H5L3E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E8_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.970e-41
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRRPS 231
            +G  VL GFRRLLWFW EYYLRGGRDRLSLEFSTHVKFWAWKRV+RLLCADDGSPTAL  APLRLPRSPYDTV R S
Sbjct:  314 EGTAVLEGFRRLLWFWSEYYLRGGRDRLSLEFSTHVKFWAWKRVVRLLCADDGSPTALVRAPLRLPRSPYDTVLRQS 390
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: D7FQ92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ92_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.330e-39
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRRPS 231
            +G  VL GFRRLLWFW EYYLRGGRDRLSLEFSTHVKFWAWKRV+RLLCADDGSPTAL  APLRLPRSPYDTV R S
Sbjct: 1235 EGAAVLEGFRRLLWFWSEYYLRGGRDRLSLEFSTHVKFWAWKRVVRLLCADDGSPTALVGAPLRLPRSPYDTVLRQS 1311
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A7S2VHD4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VHD4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.190e-25
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRR 225
            D   VL  FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL ADDGS T+L  AP+RLPRSPY    R
Sbjct:   69 DRSDVLRNFREVLWFWQEYYTHRGRDRLSLEFSSHLRFEEWDHVVSLLAADDGSATSLVPAPVRLPRSPYQRSAR 143
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A835ZCY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.750e-24
Identity = 47/79 (59.49%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRRPSHL 237
             G  VL  FR+LLWFW EYY   GRDRL +EFS+HV F  W  ++RLLCADDG+PT+L  APL LP SPY    RP  L
Sbjct: 1094 SGSEVLASFRQLLWFWEEYYAHRGRDRLGIEFSSHVDFAEWHALVRLLCADDGAPTSLMAAPLPLPPSPYARPPRPERL 1172
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A7S2A951_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A951_TRICV)

HSP 1 Score: 102 bits (254), Expect = 1.020e-23
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRR 225
            D   VL  FR LLWFW EYY   GRDRLSLEFS+H++F  W  V++LLCADDGS TAL    +RLPRSPY    R
Sbjct:  398 DRSDVLRNFRELLWFWTEYYTHRGRDRLSLEFSSHLRFQEWNNVVQLLCADDGSSTALLSCAVRLPRSPYTEAPR 472
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A7S4T954_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T954_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.550e-23
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 GPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPY 210
            GP +   FR LLWFW EYY   GRDRLSLEFS+H++F  W+ ++++LCADDG+ T+L  +P+RLP+SPY
Sbjct:  140 GP-ISRNFRELLWFWTEYYTNRGRDRLSLEFSSHLRFEEWENIVKVLCADDGARTSLVSSPIRLPKSPY 207
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A1Z5KHY6_FISSO (Trpc4-associated protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHY6_FISSO)

HSP 1 Score: 100 bits (250), Expect = 5.390e-23
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRR 225
            D   VL  FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL ADDGS T+L  AP++LPRSPY    R
Sbjct: 1374 DRTDVLRNFREVLWFWSEYYSHRGRDRLSLEFSSHIRFQEWNHVVSLLAADDGSATSLVRAPVKLPRSPYQRATR 1448
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BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A7R9WP19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WP19_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.160e-22
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRR 225
            D   V+  FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL AD+GSPTAL   P+RLPRSPY    R
Sbjct:  216 DRNDVMRNFREVLWFWFEYYTHRGRDRLSLEFSSHLRFQEWIEVVSLLGADNGSPTALVRRPIRLPRSPYQRAPR 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A7S2VEZ1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEZ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.370e-22
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPYDTVRR 225
            D   VL  FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL ADDGS T+L  AP+RLPRSPY    R
Sbjct: 1527 DRSDVLRNFREVLWFWQEYYTHRGRDRLSLEFSSHLRFEEWDHVVSLLAADDGSATSLVPAPVRLPRSPYQRSAR 1601
[Close]
BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Match: A0A7S1ZDF8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZDF8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.800e-22
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 GPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCADDGSPTALADAPLRLPRSPY 210
            GP +   FR LLWFW EYY   GRDRLSLEFS+H++F  W+ ++++LCADDG+ T+L  +P+RLP+SPY
Sbjct:  937 GP-ISRNFRELLWFWTEYYTNRGRDRLSLEFSSHLRFEEWENIVKVLCADDGARTSLVSSPIRLPKSPY 1004
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12283.4691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3E8_9PHAE3.970e-4187.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ92_ECTSI1.330e-3987.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2VHD4_9STRA6.190e-2560.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A835ZCY4_9STRA1.750e-2459.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2A951_TRICV1.020e-2361.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4T954_9STRA2.550e-2357.97Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5KHY6_FISSO5.390e-2358.67Trpc4-associated protein n=2 Tax=Fistulifera solar... [more]
A0A7R9WP19_9STRA1.160e-2258.67Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2VEZ1_9STRA1.370e-2260.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1ZDF8_9STRA8.800e-2257.97Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12283contigM-pyrifera_M_contig12283:509..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.6e-33
Seed eggNOG ortholog2880.D7FQ92
Preferred nameTRPC4AP
KEGG koko:K11796
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001942,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007275,GO:0008150,GO:0008152,GO:0008324,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009987,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016567,GO:0019538,GO:0019899,GO:0019902,GO:0019941,GO:0021700,GO:0022404,GO:0022405,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030163,GO:0031461,GO:0031464,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0042303,GO:0042633,GO:0043170,GO:0043412,GO:0043588,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046873,GO:0048513,GO:0048731,GO:0048820,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0055085,GO:0060429,GO:0070588,GO:0070647,GO:0070838,GO:0071695,GO:0071704,GO:0071944,GO:0072511,GO:0080008,GO:0098655,GO:0098660,GO:0098662,GO:0098773,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.hair follicle maturation
EggNOG OGs2CMDE@1,2QQ1C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04121
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.2234185-CDS-M-pyrifera_M_contig12283:508..7571622815747.2234185-CDS-M-pyrifera_M_contig12283:508..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12283 509..757 +
1692277550.2993178-CDS-M-pyrifera_M_contig12283:508..7571692277550.2993178-CDS-M-pyrifera_M_contig12283:508..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12283 509..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12283.4691.1prot_M-pyrifera_M_contig12283.4691.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12283 509..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12283.4691.1

>prot_M-pyrifera_M_contig12283.4691.1 ID=prot_M-pyrifera_M_contig12283.4691.1|Name=mRNA_M-pyrifera_M_contig12283.4691.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
DGPTVLCGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCA
DDGSPTALADAPLRLPRSPYDTVRRPSHLQRQ*
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mRNA from alignment at M-pyrifera_M_contig12283:509..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12283.4691.1 ID=mRNA_M-pyrifera_M_contig12283.4691.1|Name=mRNA_M-pyrifera_M_contig12283.4691.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig12283:509..757+ (Macrocystis pyrifera P11B4 male)
GACGGACCGACGGTTCTGTGCGGCTTCAGGCGCTTGCTGTGGTTTTGGGG
CGAGTATTACCTCCGGGGCGGCCGCGACCGCTTGAGCCTGGAGTTCTCGA
CGCATGTGAAGTTTTGGGCGTGGAAGAGGGTCATCCGACTGCTGTGCGCC
GACGACGGCAGCCCGACGGCACTCGCGGACGCGCCGCTGCGCCTCCCGCG
CTCCCCGTACGACACCGTCCGGCGACCCTCCCACCTGCAACGTCAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12283:509..757+

>mRNA_M-pyrifera_M_contig12283.4691.1 ID=mRNA_M-pyrifera_M_contig12283.4691.1|Name=mRNA_M-pyrifera_M_contig12283.4691.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig12283:509..757+ (Macrocystis pyrifera P11B4 male)
GACGGACCGACGGTTCTGTGCGGCTTCAGGCGCTTGCTGTGGTTTTGGGG
CGAGTATTACCTCCGGGGCGGCCGCGACCGCTTGAGCCTGGAGTTCTCGA
CGCATGTGAAGTTTTGGGCGTGGAAGAGGGTCATCCGACTGCTGTGCGCC
GACGACGGCAGCCCGACGGCACTCGCGGACGCGCCGCTGCGCCTCCCGCG
CTCCCCGTACGACACCGTCCGGCGACCCTCCCACCTGCAACGTCAATAGG
ACGGACCGACGGTTCTGTGCGGCTTCAGGCGCTTGCTGTGGTTTTGGGGC
GAGTATTACCTCCGGGGCGGCCGCGACCGCTTGAGCCTGGAGTTCTCGAC
GCATGTGAAGTTTTGGGCGTGGAAGAGGGTCATCCGACTGCTGTGCGCCG
ACGACGGCAGCCCGACGGCACTCGCGGACGCGCCGCTGCGCCTCCCGCGC
TCCCCGTACGACACCGTCCGGCGACCCTCCCACCTGCAACGTCAATAG
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