mRNA_M-pyrifera_M_contig122828.4690.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122828.4690.1
Unique NamemRNA_M-pyrifera_M_contig122828.4690.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122828.4690.1 vs. uniprot
Match: A0A5A8E8U3_CAFRO (Protein HGH1 homolog n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8U3_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 4.600e-31
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = 1 
Query:   16 STVKDLVGFLLDSRKEVRGLAARNVAALTGNAGDRALLQRAEAAGPLVRLIGDSEPVVGSYAVRALVNLSAEPGFQGQILALRVVNRVMEAIQRDACPFRGLAVMFLSNLCATPAGCMQLLQKDEHG-GRLVGLHLRQLLRL 438
            +T+ +LVGF+  +R +VR +A  +V  +     +   L+ A+AA  L RL+GD  P V S AV+ L+NLSA+  FQ Q+L LR+VN VMEA++ DAC FR   VM LSNLC T AGC+QL+QKDE   G  VG+HLR+LL L
Sbjct:    7 ATMSELVGFMTHARVDVRMVAVTHVLQVAAEPANWPGLKEAKAAPALARLVGD-HPKVASVAVQCLINLSADSEFQAQMLKLRLVNSVMEALKDDACSFRRHGVMLLSNLCQTQAGCLQLMQKDERSDGSTVGVHLRRLLAL 147
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BLAST of mRNA_M-pyrifera_M_contig122828.4690.1 vs. uniprot
Match: A0A812QMA0_9DINO (Protein HGH1 homolog n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QMA0_9DINO)

HSP 1 Score: 106 bits (264), Expect = 5.900e-24
Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 1 
Query:   16 STVKDLVGFLLDSRKEVRGLAARNVAALTGNAGDRALLQRAEAAGPLVRLIGDSEPVVGSYAVRALVNLSAEPGFQGQILALRVVNRVMEAIQRDACPFRGLAVMFLSNLCATPAGCMQLLQKDEHGGR--LVGLHLRQLLR 435
            S V++LV FL D+R EVRGL A+N+   TG+   +  L+ A+A   L RLIGD  P+    A++AL+N   +     Q+LA+R+++ +ME+++    PF+ LAVM LSNLC T  GC+QLLQ+D  G    L GLH R LL+
Sbjct:    3 SQVEELVAFLGDTRPEVRGLVAKNILQYTGDETMKTQLRAAKAPRKLCRLIGDLAPIA-EPALKALINFCDDSAALQQMLAVRLIDSLMESLRGKDFPFKRLAVMLLSNLCQTMEGCIQLLQQDVTGAAAGLRGLHFRLLLQ 143
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BLAST of mRNA_M-pyrifera_M_contig122828.4690.1 vs. uniprot
Match: A0A8J4EU88_9CHLO (DUF383 domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EU88_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 7.530e-10
Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:   16 STVKDLVGFLLDSRKEVRGLAARNVAALTGNAGDRALLQRAEAAGPLVRLIGDSEPVVGSYAVR----ALVNLSAEPGFQGQILALRVVNRVMEAIQRDACPFRGLAVMFLSNLCATPAGCMQLLQKDEHGGRLVGLHLRQLLR 435
            S + +L+GFL DSR E+R ++A  VA LT NA     L+  +   PL+  +     V+G  AVR    ALVNLS EP     +L   V+N+VME+I+    P   L    L+N+  +  G  +LLQ  +  G + G H+  LL+
Sbjct:    4 SDLGELIGFLEDSRDEIRAMSAEIVAGLTANAEGMEKLKCVQR--PLIIKLLQCV-VLGGDAVRKALVALVNLSHEPAVVEILLDSNVINQVMESIRDRTTPHVDLLTSLLANITISERGSKELLQLGK--GSMEGHHMAVLLK 142
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BLAST of mRNA_M-pyrifera_M_contig122828.4690.1 vs. uniprot
Match: A0A8J4BXY2_9CHLO (DUF383 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BXY2_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.410e-9
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:   16 STVKDLVGFLLDSRKEVRGLAARNVAALTGNAGDRALLQRAEA--AGPLVRLIGDSEPVVGSYAVR----ALVNLSAEPGFQGQILALRVVNRVMEAIQRDACPFRGLAVMFLSNLCATPAGCMQLLQKDEHGGRLVGLHLRQLLR 435
            S + +L+GFL DSR E+R ++A  VA LT NA     L+  +   A  L + +G     +G  AVR    ALVNLS +P     +L L  +NRVM+ I+    P   L    L+N+  +  G   LLQ  +  G + GLH+  LL+
Sbjct:    4 SDLGELIGFLDDSRNEIRAMSAEIVAGLTANAEGMEKLKCVQRPLAIKLFQCVG-----MGGDAVRKALVALVNLSHDPAVVEMLLDLNAINRVMDFIRDRIVPHVDLLTGLLANMTISERGSKDLLQIGK--GSMEGLHMAVLLK 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122828.4690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5A8E8U3_CAFRO4.600e-3150.70Protein HGH1 homolog n=4 Tax=Cafeteria roenbergens... [more]
A0A812QMA0_9DINO5.900e-2445.07Protein HGH1 homolog n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A8J4EU88_9CHLO7.530e-1036.81DUF383 domain-containing protein n=2 Tax=Volvox af... [more]
A0A8J4BXY2_9CHLO1.410e-936.30DUF383 domain-containing protein n=1 Tax=Volvox re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122828contigM-pyrifera_M_contig122828:1..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.5
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog3075.A0A087SG50
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF383)
EggNOG OGs34I0T@3041,37HH1@33090,KOG2973@1,KOG2973@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.1260724-CDS-M-pyrifera_M_contig122828:0..4381622815747.1260724-CDS-M-pyrifera_M_contig122828:0..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122828 1..438 -
1692277550.2565503-CDS-M-pyrifera_M_contig122828:0..4381692277550.2565503-CDS-M-pyrifera_M_contig122828:0..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122828 1..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122828.4690.1prot_M-pyrifera_M_contig122828.4690.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122828 1..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122828.4690.1

>prot_M-pyrifera_M_contig122828.4690.1 ID=prot_M-pyrifera_M_contig122828.4690.1|Name=mRNA_M-pyrifera_M_contig122828.4690.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
ATQEYSTVKDLVGFLLDSRKEVRGLAARNVAALTGNAGDRALLQRAEAAG
PLVRLIGDSEPVVGSYAVRALVNLSAEPGFQGQILALRVVNRVMEAIQRD
ACPFRGLAVMFLSNLCATPAGCMQLLQKDEHGGRLVGLHLRQLLRL
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mRNA from alignment at M-pyrifera_M_contig122828:1..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122828.4690.1 ID=mRNA_M-pyrifera_M_contig122828.4690.1|Name=mRNA_M-pyrifera_M_contig122828.4690.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig122828:1..438- (Macrocystis pyrifera P11B4 male)
GCGACGCAAGAGTACTCGACGGTGAAGGACCTGGTCGGGTTTCTGCTGGA
CTCTCGGAAGGAGGTGCGGGGCCTCGCGGCACGCAACGTGGCCGCGTTGA
CTGGAAACGCTGGGGATCGGGCGCTCTTGCAGCGTGCAGAGGCCGCTGGC
CCGCTGGTTCGGTTGATTGGTGACTCGGAGCCGGTGGTGGGCTCGTATGC
GGTGCGTGCTCTGGTGAATTTGAGCGCAGAGCCGGGCTTCCAGGGCCAGA
TTTTGGCGCTTCGCGTTGTGAACCGCGTGATGGAGGCCATCCAGCGTGAC
GCGTGCCCTTTTCGGGGTCTGGCAGTGATGTTTCTGAGCAACCTGTGCGC
CACCCCGGCCGGGTGCATGCAGCTCCTGCAGAAAGACGAGCACGGCGGTC
GATTGGTGGGTCTGCACTTGCGGCAGCTGCTGCGTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122828:1..438-

>mRNA_M-pyrifera_M_contig122828.4690.1 ID=mRNA_M-pyrifera_M_contig122828.4690.1|Name=mRNA_M-pyrifera_M_contig122828.4690.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig122828:1..438- (Macrocystis pyrifera P11B4 male)
GCGACGCAAGAGTACTCGACGGTGAAGGACCTGGTCGGGTTTCTGCTGGA
CTCTCGGAAGGAGGTGCGGGGCCTCGCGGCACGCAACGTGGCCGCGTTGA
CTGGAAACGCTGGGGATCGGGCGCTCTTGCAGCGTGCAGAGGCCGCTGGC
CCGCTGGTTCGGTTGATTGGTGACTCGGAGCCGGTGGTGGGCTCGTATGC
GGTGCGTGCTCTGGTGAATTTGAGCGCAGAGCCGGGCTTCCAGGGCCAGA
TTTTGGCGCTTCGCGTTGTGAACCGCGTGATGGAGGCCATCCAGCGTGAC
GCGTGCCCTTTTCGGGGTCTGGCAGTGATGTTTCTGAGCAACCTGTGCGC
CACCCCGGCCGGGTGCATGCAGCTCCTGCAGAAAGACGAGCACGGCGGTC
GATTGGTGGGTCTGCACTTGCGGCAGCTGCTGCGTCTGGCGACGCAAGAG
TACTCGACGGTGAAGGACCTGGTCGGGTTTCTGCTGGACTCTCGGAAGGA
GGTGCGGGGCCTCGCGGCACGCAACGTGGCCGCGTTGACTGGAAACGCTG
GGGATCGGGCGCTCTTGCAGCGTGCAGAGGCCGCTGGCCCGCTGGTTCGG
TTGATTGGTGACTCGGAGCCGGTGGTGGGCTCGTATGCGGTGCGTGCTCT
GGTGAATTTGAGCGCAGAGCCGGGCTTCCAGGGCCAGATTTTGGCGCTTC
GCGTTGTGAACCGCGTGATGGAGGCCATCCAGCGTGACGCGTGCCCTTTT
CGGGGTCTGGCAGTGATGTTTCTGAGCAACCTGTGCGCCACCCCGGCCGG
GTGCATGCAGCTCCTGCAGAAAGACGAGCACGGCGGTCGATTGGTGGGTC
TGCACTTGCGGCAGCTGCTGCGTCTG
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