mRNA_M-pyrifera_M_contig122805.4685.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122805.4685.1
Unique NamemRNA_M-pyrifera_M_contig122805.4685.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: A0A024UGA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGA5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.600e-33
Identity = 72/160 (45.00%), Postives = 105/160 (65.62%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRRA-IRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SAL +K+F  QL+NT  IVL+VNA +   ++  LP  ++ +F GEF  F  +W+  VGV IA TML N V P + P   A  ++P  R L +RA I Q+ LD++YA P F ++ RYP++LN +FVT++Y  G+P+L+PI+A   LI+Y  DK  L+R Y+
Sbjct:  772 SALVFKLFFAQLLNTGVIVLLVNASW---TDVPLPLSLDKIFHGEFPDFVQKWYVAVGVGIATTMLVNSVAPQVAPTLNAFVIAPMSRWLGQRAAITQKQLDELYAGPPFDISLRYPLVLNTVFVTMMYCGGIPVLLPIAAASCLITYCCDKLTLMRLYS 928          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: W4GH45_9STRA (PHM7_cyt domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GH45_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.460e-33
Identity = 72/160 (45.00%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRR-AIRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SAL +K+F  QL+NT  IVL+VNA +   ++  LP  +E +F GEF  F  +W+  VGV IA TML N V P + P      + P  R   +R AI Q+ LD+VYA P F ++ RYP++LN +FVT++Y  G+P+L+PI+A   LI+Y  DK  L+R Y+
Sbjct:  773 SALVFKLFFAQLLNTGVIVLLVNANW---TDVPLPLSLEKIFHGEFDDFVQKWYVAVGVGIATTMLVNSVAPQIAPTMMTFVIGPISRWFGQRSAITQKQLDEVYAGPPFDISLRYPLVLNTVFVTMMYCGGIPILLPIAAASCLITYSCDKVTLMRLYS 929          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: W4GFZ6_9STRA (PHM7_cyt domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFZ6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.470e-33
Identity = 72/160 (45.00%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRR-AIRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SAL +K+F  QL+NT  IVL+VNA +   ++  LP  +E +F GEF  F  +W+  VGV IA TML N V P + P      + P  R   +R AI Q+ LD+VYA P F ++ RYP++LN +FVT++Y  G+P+L+PI+A   LI+Y  DK  L+R Y+
Sbjct:  794 SALVFKLFFAQLLNTGVIVLLVNANW---TDVPLPLSLEKIFHGEFDDFVQKWYVAVGVGIATTMLVNSVAPQIAPTMMTFVIGPISRWFGQRSAITQKQLDEVYAGPPFDISLRYPLVLNTVFVTMMYCGGIPILLPIAAASCLITYSCDKVTLMRLYS 950          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: W4GI25_9STRA (PHM7_cyt domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GI25_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.550e-33
Identity = 72/160 (45.00%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRR-AIRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SAL +K+F  QL+NT  IVL+VNA +   ++  LP  +E +F GEF  F  +W+  VGV IA TML N V P + P      + P  R   +R AI Q+ LD+VYA P F ++ RYP++LN +FVT++Y  G+P+L+PI+A   LI+Y  DK  L+R Y+
Sbjct:  794 SALVFKLFFAQLLNTGVIVLLVNANW---TDVPLPLSLEKIFHGEFDDFVQKWYVAVGVGIATTMLVNSVAPQIAPTMMTFVIGPISRWFGQRSAITQKQLDEVYAGPPFDISLRYPLVLNTVFVTMMYCGGIPILLPIAAASCLITYSCDKVTLMRLYS 950          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: A0A482UFI0_9ARCH (RSN1_7TM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFI0_9ARCH)

HSP 1 Score: 133 bits (334), Expect = 4.000e-33
Identity = 69/158 (43.67%), Postives = 100/158 (63.29%), Query Frame = 1
Query:    4 ALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRML-HRRAIRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFY 474
            A+A+K+F+   +NTA + L++NA     S + L      LF G +SGF  RW   VG  I LTML N+V PH++ + R  CV PC+R+   +RA+ Q DL+  + PP F + TR  V++N  F  ++YSAG P+L+PI+A  F++SY VDKY +LR Y
Sbjct:  457 AVAWKVFLSLFLNTACLALIINAALPG-SAAELEVAGTRLFSGRYSGFDVRWHVSVGAGIVLTMLINIVTPHMFSIMRFLCVMPCRRLTGDKRAVTQVDLNSRFTPPNFEMPTRTAVVMNTFFSCLMYSAGHPILLPIAAAAFIVSYVVDKYAILRMY 613          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: A0A5A8DDX0_CAFRO (RSN1_7TM domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDX0_CAFRO)

HSP 1 Score: 130 bits (328), Expect = 3.120e-32
Identity = 68/156 (43.59%), Postives = 105/156 (67.31%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRRAIRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLR 468
            +AL  KIFV Q +NT+ IVL+VNA+F F+ +  L      LF G ++ F+P+W++ VGV I +TMLTNVVVPH+  +T A    P    L RR +   D++++YA P F  + +YPV+LN +FVT++Y AG+P+L+PI+A    ++Y++++  L R
Sbjct:  820 AALTTKIFVSQFVNTSLIVLLVNAQFQFVQDIGLKGGFLGLFAGSYASFEPKWYSAVGVGICITMLTNVVVPHMGFVT-AILRRPLN-FLVRRPVDDADMEELYAMPRFDASGKYPVLLNVVFVTVMYCAGLPVLLPIAAAFMFVTYWLERLTLTR 973          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: A0A0P1B7H2_PLAHL (RSN1_7TM domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7H2_PLAHL)

HSP 1 Score: 124 bits (312), Expect = 4.450e-30
Identity = 71/160 (44.38%), Postives = 106/160 (66.25%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRRAIR-QEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SA+A K+F  Q +NTA IVLVVNA    +S S +P  I  LF G++S F+  W+  VG+ + +TML N V+P    L + C +SP +R L RR++R QE +DK+YA P+F +A RYP+ILN++FVT+++  G P+L+ I+      +Y++DK  LL  Y+
Sbjct:  879 SAVALKMFAAQFLNTAIIVLVVNAA---LSVSAIPI-IGDLFRGKYSDFQRDWYPTVGMGVTMTMLINAVMPQTILLLQLCLISPLKRCLARRSVRTQERMDKLYAGPKFDLAVRYPMILNSVFVTLVFCGGSPVLLFIATFACCATYWIDKLSLLWLYS 1034          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: A0A6G0X766_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X766_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.230e-30
Identity = 63/160 (39.38%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRR-AIRQEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SAL  K+F  Q +NT  IVL+VNA +  +    LP  ++ +  G+F  F  +W+  VGV I+ TM+ N V P + P      ++P  + L +R AI Q+ LD+VYA P F ++ RYP++LN +FVT++Y  G+P+L+P++++G LI++  DK  L+R ++
Sbjct:  882 SALVIKLFFAQFLNTGVIVLLVNANWTKVP---LPLSLDEILHGQFDDFVQQWYVAVGVGISTTMMVNAVAPQVVPFLMTFVINPISQCLGKRSAITQKQLDEVYAGPPFDISLRYPLVLNTVFVTMIYCGGLPILLPLASLGCLITHLFDKLTLMRLFS 1038          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: H3GEZ1_PHYRM (RSN1_7TM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEZ1_PHYRM)

HSP 1 Score: 123 bits (308), Expect = 1.540e-29
Identity = 68/160 (42.50%), Postives = 104/160 (65.00%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRRAIR-QEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SA+A K+F  Q +NTA IVLVVNA  +     +  P I  LF G+FS F+  W+  VG+ + +TML N VVP    L   C +SP +R + RR++R QE +D++YA P F +A RYP++LN++FVT+++  G P+L+ I+A+    ++++DK  LL  Y+
Sbjct:  879 SAVALKMFAAQFLNTAIIVLVVNAALSL----SAVPVIGELFRGKFSDFQRDWYPTVGMGVTMTMLINAVVPQAILLLNLCLLSPLKRCIARRSVRTQEKMDQLYAGPTFDLAVRYPMVLNSVFVTLVFCGGSPVLLFIAALACTATFWLDKLALLWLYS 1034          
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Match: W2PK51_PHYPN (RSN1_7TM domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PK51_PHYPN)

HSP 1 Score: 123 bits (308), Expect = 1.540e-29
Identity = 65/160 (40.62%), Postives = 104/160 (65.00%), Query Frame = 1
Query:    1 SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFKPRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRRAIR-QEDLDKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVDKYMLLRFYA 477
            SA+A K+F  Q +NTA IVLVVNA  +     +  P +  LF G++S F+  W+  VG+ + +TML N ++PH   L + C + P +R L RR++R QE +D++YA P F +A RYP+ILN++FVT+++  G P+L+ I+ +    ++++DK  LL  Y+
Sbjct:  905 SAVALKMFAAQFLNTAIIVLVVNAALSL----SAVPVVGELFRGKYSDFQRDWYPTVGMGVTMTMLINAIMPHCILLLQLCVIGPLKRCLTRRSVRTQEKMDQLYAGPTFDLAVRYPMILNSVFVTLVFCGGSPVLLFIATLACTATFWIDKLSLLWLYS 1060          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122805.4685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024UGA5_9STRA2.600e-3345.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GH45_9STRA3.460e-3345.00PHM7_cyt domain-containing protein n=2 Tax=Aphanom... [more]
W4GFZ6_9STRA3.470e-3345.00PHM7_cyt domain-containing protein n=8 Tax=Aphanom... [more]
W4GI25_9STRA3.550e-3345.00PHM7_cyt domain-containing protein n=5 Tax=Aphanom... [more]
A0A482UFI0_9ARCH4.000e-3343.67RSN1_7TM domain-containing protein (Fragment) n=1 ... [more]
A0A5A8DDX0_CAFRO3.120e-3243.59RSN1_7TM domain-containing protein n=4 Tax=Cafeter... [more]
A0A0P1B7H2_PLAHL4.450e-3044.38RSN1_7TM domain-containing protein n=1 Tax=Plasmop... [more]
A0A6G0X766_9STRA8.230e-3039.38Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GEZ1_PHYRM1.540e-2942.50RSN1_7TM domain-containing protein n=1 Tax=Phytoph... [more]
W2PK51_PHYPN1.540e-2940.63RSN1_7TM domain-containing protein n=10 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122805contigM-pyrifera_M_contig122805:36..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue3e-28
Seed eggNOG ortholog157072.XP_008866757.1
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categorysignal peptide
EggNOG OGs28SCF@1,2QZ1Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.8842015-CDS-M-pyrifera_M_contig122805:35..5121622815746.8842015-CDS-M-pyrifera_M_contig122805:35..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122805 36..512 -
1692277550.1718705-CDS-M-pyrifera_M_contig122805:35..5121692277550.1718705-CDS-M-pyrifera_M_contig122805:35..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122805 36..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122805.4685.1prot_M-pyrifera_M_contig122805.4685.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122805 36..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122805.4685.1

>prot_M-pyrifera_M_contig122805.4685.1 ID=prot_M-pyrifera_M_contig122805.4685.1|Name=mRNA_M-pyrifera_M_contig122805.4685.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
SALAYKIFVGQLINTAFIVLVVNAEFAFISESNLPPEIETLFVGEFSGFK
PRWFTVVGVAIALTMLTNVVVPHLWPLTRACCVSPCQRMLHRRAIRQEDL
DKVYAPPEFVVATRYPVILNNMFVTILYSAGMPLLIPISAIGFLISYFVD
KYMLLRFYA
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mRNA from alignment at M-pyrifera_M_contig122805:36..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122805.4685.1 ID=mRNA_M-pyrifera_M_contig122805.4685.1|Name=mRNA_M-pyrifera_M_contig122805.4685.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig122805:36..512- (Macrocystis pyrifera P11B4 male)
AGCGCGCTGGCCTACAAGATCTTCGTGGGACAGCTCATCAACACGGCCTT TATCGTGCTCGTGGTGAACGCGGAATTCGCCTTCATTTCCGAGTCCAACC TGCCACCCGAAATCGAAACCCTCTTTGTGGGCGAGTTTTCGGGGTTCAAG CCGCGATGGTTCACCGTCGTGGGAGTGGCCATTGCGCTGACCATGCTCAC CAACGTGGTCGTCCCACATCTCTGGCCCCTCACTCGAGCCTGCTGCGTCT CGCCATGCCAGCGCATGCTGCACCGCCGTGCCATTCGTCAGGAGGACCTG GACAAGGTGTATGCTCCTCCAGAGTTTGTGGTGGCCACTCGCTACCCCGT CATCCTCAACAACATGTTCGTCACCATCCTCTACTCGGCAGGCATGCCTC TGCTCATCCCCATCTCCGCCATTGGCTTCCTCATCTCCTACTTTGTCGAC AAGTACATGCTCCTCCGCTTCTACGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122805:36..512-

>mRNA_M-pyrifera_M_contig122805.4685.1 ID=mRNA_M-pyrifera_M_contig122805.4685.1|Name=mRNA_M-pyrifera_M_contig122805.4685.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig122805:36..512- (Macrocystis pyrifera P11B4 male)
AGCGCGCTGGCCTACAAGATCTTCGTGGGACAGCTCATCAACACGGCCTT
TATCGTGCTCGTGGTGAACGCGGAATTCGCCTTCATTTCCGAGTCCAACC
TGCCACCCGAAATCGAAACCCTCTTTGTGGGCGAGTTTTCGGGGTTCAAG
CCGCGATGGTTCACCGTCGTGGGAGTGGCCATTGCGCTGACCATGCTCAC
CAACGTGGTCGTCCCACATCTCTGGCCCCTCACTCGAGCCTGCTGCGTCT
CGCCATGCCAGCGCATGCTGCACCGCCGTGCCATTCGTCAGGAGGACCTG
GACAAGGTGTATGCTCCTCCAGAGTTTGTGGTGGCCACTCGCTACCCCGT
CATCCTCAACAACATGTTCGTCACCATCCTCTACTCGGCAGGCATGCCTC
TGCTCATCCCCATCTCCGCCATTGGCTTCCTCATCTCCTACTTTGTCGAC
AAGTACATGCTCCTCCGCTTCTACGCAAGCGCGCTGGCCTACAAGATCTT
CGTGGGACAGCTCATCAACACGGCCTTTATCGTGCTCGTGGTGAACGCGG
AATTCGCCTTCATTTCCGAGTCCAACCTGCCACCCGAAATCGAAACCCTC
TTTGTGGGCGAGTTTTCGGGGTTCAAGCCGCGATGGTTCACCGTCGTGGG
AGTGGCCATTGCGCTGACCATGCTCACCAACGTGGTCGTCCCACATCTCT
GGCCCCTCACTCGAGCCTGCTGCGTCTCGCCATGCCAGCGCATGCTGCAC
CGCCGTGCCATTCGTCAGGAGGACCTGGACAAGGTGTATGCTCCTCCAGA
GTTTGTGGTGGCCACTCGCTACCCCGTCATCCTCAACAACATGTTCGTCA
CCATCCTCTACTCGGCAGGCATGCCTCTGCTCATCCCCATCTCCGCCATT
GGCTTCCTCATCTCCTACTTTGTCGACAAGTACATGCTCCTCCGCTTCTA
CGCA
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