mRNA_M-pyrifera_M_contig122786.4678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122786.4678.1
Unique NamemRNA_M-pyrifera_M_contig122786.4678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: A0A0P8AZ21_9GAMM (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=38 Tax=root TaxID=1 RepID=A0A0P8AZ21_9GAMM)

HSP 1 Score: 262 bits (670), Expect = 1.950e-84
Identity = 135/144 (93.75%), Postives = 138/144 (95.83%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSME 432
            TAGPKDG+GAAAAIQAAL MANLT  AIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQ LPPTINLEQCD+DMQDLTFVT TGQKH TQHVLCNGFGFGGVNAALI+SSME
Sbjct:  279 TAGPKDGAGAAAAIQAALGMANLTIGAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQLLPPTINLEQCDEDMQDLTFVTTTGQKHNTQHVLCNGFGFGGVNAALIISSME 422          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: A0A3T1DWI5_9GAMM (Ketoacyl-synt_C domain-containing protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DWI5_9GAMM)

HSP 1 Score: 236 bits (601), Expect = 4.720e-78
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 1
Query:   58 MANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSMER 435
            MANL+TDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLA NTQ LPPTINLEQCD+DMQDLTFVT TGQ+H+TQHVLCNGFGFGGVNAALIVS MER
Sbjct:    1 MANLSTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLACNTQQLPPTINLEQCDEDMQDLTFVTTTGQQHSTQHVLCNGFGFGGVNAALIVSRMER 126          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: UPI00111A9033 (beta-ketoacyl-ACP synthase II n=2 Tax=Halomonas TaxID=2745 RepID=UPI00111A9033)

HSP 1 Score: 244 bits (624), Expect = 1.630e-77
Identity = 130/145 (89.66%), Postives = 133/145 (91.72%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSMER 435
            TAGPKDGSGAAAAIQAAL MA L  DAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLA+  Q LPPTINLE CD+DMQDLTFVT+  Q H TQHVLCNGFGFGGVNAALIVSSMER
Sbjct:  279 TAGPKDGSGAAAAIQAALGMAKLDPDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLALRHQQLPPTINLEACDEDMQDLTFVTSAHQ-HATQHVLCNGFGFGGVNAALIVSSMER 422          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: UPI00201F2CF5 (beta-ketoacyl-ACP synthase II n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F2CF5)

HSP 1 Score: 233 bits (594), Expect = 5.500e-73
Identity = 120/145 (82.76%), Postives = 129/145 (88.97%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSMER 435
            TAGP+DG+GAAAAI +AL MA L  DAIDHINAHATSTPVGDRAEIASLRNVFGE LP+IPISATKA+TGHLLGAAGGIESIFSVL+     LPPTINLEQCD DM DLTFVTAT Q H T+HVLCNGFGFGGVNAALIVS++ER
Sbjct:  279 TAGPEDGAGAAAAIHSALGMAGLGIDAIDHINAHATSTPVGDRAEIASLRNVFGELLPSIPISATKASTGHLLGAAGGIESIFSVLSAVNHQLPPTINLEQCDGDMHDLTFVTATAQPHATRHVLCNGFGFGGVNAALIVSNLER 423          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: A0A2A3XC36_9GAMM (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=3 Tax=Halomonas TaxID=2745 RepID=A0A2A3XC36_9GAMM)

HSP 1 Score: 225 bits (574), Expect = 5.580e-70
Identity = 114/145 (78.62%), Postives = 128/145 (88.28%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSMER 435
            TAGP+DG GAA AIQAAL MA L+ DAI+HINAHATSTPVGDRAEIASLRNVFG  LP IPISATK++TGHLLGAAGGIESIFSV+A  T  +PPTINLE CDD+MQDL FVTA+ + H+TQHVLCNGFGFGGVNAALI+S ++R
Sbjct:  279 TAGPEDGGGAALAIQAALGMAGLSKDAINHINAHATSTPVGDRAEIASLRNVFGSLLPNIPISATKSSTGHLLGAAGGIESIFSVMAAMTDQMPPTINLEHCDDEMQDLNFVTASPRDHSTQHVLCNGFGFGGVNAALIISKIKR 423          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: W7PSX6_9GAMM (Ketoacyl-synt_C domain-containing protein n=1 Tax=Halomonas sp. BC04 TaxID=1403540 RepID=W7PSX6_9GAMM)

HSP 1 Score: 209 bits (533), Expect = 5.270e-67
Identity = 108/143 (75.52%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSM 429
            TAGP+DGSGAAAAI +AL MA L  DAIDHINAHATSTPVGDRAEIA+LRN FG+ L  IPISATKA TGHLLGAAGG+ESIFS LAV    LPPT+NLE  DDD+QDL FV  + ++H +QHVLCNGFGFGGVNAALIVS +
Sbjct:   32 TAGPEDGSGAAAAIWSALRMAGLAPDAIDHINAHATSTPVGDRAEIAALRNAFGDTLAGIPISATKATTGHLLGAAGGVESIFSALAVIHDRLPPTLNLENADDDLQDLDFVRGSAREHRSQHVLCNGFGFGGVNAALIVSKV 174          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: A0A832QCL4_9GAMM (Beta-ketoacyl-ACP synthase II n=1 Tax=Pseudomonadaceae bacterium TaxID=1914538 RepID=A0A832QCL4_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 1.240e-65
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1
Query:    4 AGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSM 429
            AGP+DG+GAAAA++ AL MA L+ +AIDHINAHATSTPVGDRAEIA+LRN FG+ L  IPISATK+ATGHLLGAAGG+ESIFSVLAV    LPPT+NLE  DDD+QDL  V+ + ++H T+HVLCNGFGFGGVNAALIVS +
Sbjct:   44 AGPEDGAGAAAAVRTALRMAGLSPEAIDHINAHATSTPVGDRAEIAALRNAFGDALAGIPISATKSATGHLLGAAGGVESIFSVLAVMHDRLPPTLNLENVDDDLQDLDIVSGSAREHATRHVLCNGFGFGGVNAALIVSKI 185          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: A0A4V3F361_9GAMM (3-oxoacyl-[acyl-carrier-protein] synthase II n=1 Tax=Chromohalobacter marismortui TaxID=42055 RepID=A0A4V3F361_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 1.880e-63
Identity = 104/143 (72.73%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSM 429
            TAGP+DG+GAAAAI+AAL MA L  +AI HINAHATSTPVGDRAEIASLRN FG+ LP IPISATK+ATGHLLGAAGG+ESIFS +A     LPPT+NLE  D+D+ DL FV+   ++H +QHVLCNGFGFGGVNAALIVS +
Sbjct:  184 TAGPEDGAGAAAAIRAALRMAGLAPEAIGHINAHATSTPVGDRAEIASLRNAFGDALPGIPISATKSATGHLLGAAGGVESIFSAMAAIQDRLPPTLNLENADEDLSDLDFVSGEAREHRSQHVLCNGFGFGGVNAALIVSKV 326          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: S2KTV6_HALAF (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Halomonas anticariensis (strain DSM 16096 / CECT 5854 / LMG 22089 / FP35) TaxID=1121939 RepID=S2KTV6_HALAF)

HSP 1 Score: 208 bits (529), Expect = 2.980e-63
Identity = 107/143 (74.83%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSM 429
            TAGP+DG+GAAAAI+AAL MA L  +AI HINAHATSTPVGDRAEIA+LRNVFG+ L  IPISATK+ATGHLLGAAGG+ESIFS LAV    LPPT+NLE  DDDMQDL FV+   ++  TQHVLCNGFGFGGVNAALI+S +
Sbjct:  279 TAGPEDGAGAAAAIRAALKMAALPLEAISHINAHATSTPVGDRAEIAALRNVFGDALSGIPISATKSATGHLLGAAGGVESIFSALAVINDWLPPTLNLENADDDMQDLDFVSGAARQQPTQHVLCNGFGFGGVNAALIISKV 421          
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Match: UPI001C08E123 (beta-ketoacyl-ACP synthase II n=1 Tax=Gilvimarinus agarilyticus TaxID=679259 RepID=UPI001C08E123)

HSP 1 Score: 206 bits (525), Expect = 9.700e-63
Identity = 102/143 (71.33%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    1 TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLRNVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLEQCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSM 429
            TAGP+DG+GAAAA++ AL MANL+ +AIDHINAHATSTPVGDRAEIA+LRN FG+ L  IPISATK++TGHLLGAAGG+ESIFS LAV    LPPT+NLE  D+++QDL  V+ + ++HTTQH LCNGFGFGGVNAALI+S +
Sbjct:  271 TAGPEDGAGAAAAVRTALKMANLSPEAIDHINAHATSTPVGDRAEIAALRNAFGDSLAKIPISATKSSTGHLLGAAGGVESIFSALAVMHDRLPPTLNLENIDEELQDLDIVSGSAREHTTQHALCNGFGFGGVNAALIISKI 413          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122786.4678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P8AZ21_9GAMM1.950e-8493.753-oxoacyl-[acyl-carrier-protein] synthase 2 n=38 T... [more]
A0A3T1DWI5_9GAMM4.720e-7893.65Ketoacyl-synt_C domain-containing protein n=1 Tax=... [more]
UPI00111A90331.630e-7789.66beta-ketoacyl-ACP synthase II n=2 Tax=Halomonas Ta... [more]
UPI00201F2CF55.500e-7382.76beta-ketoacyl-ACP synthase II n=1 Tax=Halomonas ol... [more]
A0A2A3XC36_9GAMM5.580e-7078.623-oxoacyl-[acyl-carrier-protein] synthase 2 n=3 Ta... [more]
W7PSX6_9GAMM5.270e-6775.52Ketoacyl-synt_C domain-containing protein n=1 Tax=... [more]
A0A832QCL4_9GAMM1.240e-6573.24Beta-ketoacyl-ACP synthase II n=1 Tax=Pseudomonada... [more]
A0A4V3F361_9GAMM1.880e-6372.733-oxoacyl-[acyl-carrier-protein] synthase II n=1 T... [more]
S2KTV6_HALAF2.980e-6374.833-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Ta... [more]
UPI001C08E1239.700e-6371.33beta-ketoacyl-ACP synthase II n=1 Tax=Gilvimarinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122786contigM-pyrifera_M_contig122786:88..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score264.2
Seed ortholog evalue3.5e-68
Seed eggNOG ortholog1479235.KK366039_gene1570
Preferred namefabF
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
EggNOG OGs1MU1X@1224,1RN9K@1236,1XRAV@135619,COG0304@1,COG0304@2
EC2.3.1.179
COG Functional cat.I
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.5212052-CDS-M-pyrifera_M_contig122786:87..5251622815746.5212052-CDS-M-pyrifera_M_contig122786:87..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122786 88..525 -
1692277549.956233-CDS-M-pyrifera_M_contig122786:87..5251692277549.956233-CDS-M-pyrifera_M_contig122786:87..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122786 88..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122786.4678.1prot_M-pyrifera_M_contig122786.4678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122786 88..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122786.4678.1

>prot_M-pyrifera_M_contig122786.4678.1 ID=prot_M-pyrifera_M_contig122786.4678.1|Name=mRNA_M-pyrifera_M_contig122786.4678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
TAGPKDGSGAAAAIQAALDMANLTTDAIDHINAHATSTPVGDRAEIASLR
NVFGERLPAIPISATKAATGHLLGAAGGIESIFSVLAVNTQTLPPTINLE
QCDDDMQDLTFVTATGQKHTTQHVLCNGFGFGGVNAALIVSSMER*
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mRNA from alignment at M-pyrifera_M_contig122786:88..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122786.4678.1 ID=mRNA_M-pyrifera_M_contig122786.4678.1|Name=mRNA_M-pyrifera_M_contig122786.4678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig122786:88..525- (Macrocystis pyrifera P11B4 male)
ACGGCAGGCCCAAAAGATGGCTCCGGTGCAGCGGCGGCGATTCAAGCGGC GCTAGATATGGCAAACCTTACCACTGATGCCATTGACCATATCAATGCCC ATGCCACTTCGACGCCCGTTGGCGACCGGGCCGAAATTGCCTCGCTGCGC AATGTATTTGGTGAGCGCTTGCCCGCCATTCCTATTTCGGCAACGAAGGC CGCCACAGGTCATCTATTAGGCGCAGCGGGGGGCATAGAGAGTATTTTTT CTGTCTTGGCCGTCAATACGCAGACACTCCCACCCACCATCAATCTTGAG CAGTGCGATGACGATATGCAGGATTTAACCTTCGTCACAGCGACTGGTCA GAAGCACACCACCCAGCATGTATTGTGCAACGGATTCGGCTTTGGTGGCG TCAATGCAGCGCTTATCGTCAGCAGTATGGAGCGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122786:88..525-

>mRNA_M-pyrifera_M_contig122786.4678.1 ID=mRNA_M-pyrifera_M_contig122786.4678.1|Name=mRNA_M-pyrifera_M_contig122786.4678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig122786:88..525- (Macrocystis pyrifera P11B4 male)
ACGGCAGGCCCAAAAGATGGCTCCGGTGCAGCGGCGGCGATTCAAGCGGC
GCTAGATATGGCAAACCTTACCACTGATGCCATTGACCATATCAATGCCC
ATGCCACTTCGACGCCCGTTGGCGACCGGGCCGAAATTGCCTCGCTGCGC
AATGTATTTGGTGAGCGCTTGCCCGCCATTCCTATTTCGGCAACGAAGGC
CGCCACAGGTCATCTATTAGGCGCAGCGGGGGGCATAGAGAGTATTTTTT
CTGTCTTGGCCGTCAATACGCAGACACTCCCACCCACCATCAATCTTGAG
CAGTGCGATGACGATATGCAGGATTTAACCTTCGTCACAGCGACTGGTCA
GAAGCACACCACCCAGCATGTATTGTGCAACGGATTCGGCTTTGGTGGCG
TCAATGCAGCGCTTATCGTCAGCAGTATGGAGCGTTAAACGGCAGGCCCA
AAAGATGGCTCCGGTGCAGCGGCGGCGATTCAAGCGGCGCTAGATATGGC
AAACCTTACCACTGATGCCATTGACCATATCAATGCCCATGCCACTTCGA
CGCCCGTTGGCGACCGGGCCGAAATTGCCTCGCTGCGCAATGTATTTGGT
GAGCGCTTGCCCGCCATTCCTATTTCGGCAACGAAGGCCGCCACAGGTCA
TCTATTAGGCGCAGCGGGGGGCATAGAGAGTATTTTTTCTGTCTTGGCCG
TCAATACGCAGACACTCCCACCCACCATCAATCTTGAGCAGTGCGATGAC
GATATGCAGGATTTAACCTTCGTCACAGCGACTGGTCAGAAGCACACCAC
CCAGCATGTATTGTGCAACGGATTCGGCTTTGGTGGCGTCAATGCAGCGC
TTATCGTCAGCAGTATGGAGCGTTAA
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