mRNA_M-pyrifera_M_contig122780.4676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122780.4676.1
Unique NamemRNA_M-pyrifera_M_contig122780.4676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122780.4676.1 vs. uniprot
Match: A0A178MTL5_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178MTL5_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 LTDDELAAGGLAPVQAFMRTKASKNAIRQRRAKAKKEAGADGATPSKQLNIIAPADDDARAALKTTAQRLIDGDLSP 231
            L DD LA GG+ PV+A++RTKAS  A+RQRR   K+E  A  A  +KQ+ + AP+DD +R A+K  A  + D  L+P
Sbjct:   46 LDDDRLARGGVVPVKAYLRTKASAEALRQRR---KRERQA--AKGTKQVAVAAPSDDASRDAIKVFAAAMRDSVLAP 117
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BLAST of mRNA_M-pyrifera_M_contig122780.4676.1 vs. uniprot
Match: U3B5M5_PSEA4 (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=U3B5M5_PSEA4)

HSP 1 Score: 48.1 bits (113), Expect = 7.750e-5
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    1 LTDDELAAGGLAPVQAFMRTKASKNAIRQRRAKAKKEAGADGATPSKQLNIIAPADDDARAALKTTAQRLIDGD 222
            LTDD+L  GGL  V+AF+RT+AS+NA+R +  K +++A A+G     Q+N++AP  + AR  LK  A+R   G+
Sbjct:   24 LTDDQLEEGGLRQVRAFVRTRASRNALRVQ--KHREKAAAEGLG---QVNVVAP--EAARDVLKAIAKRTAGGE 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122780.4676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A178MTL5_9PROT1.010e-748.05Uncharacterized protein n=2 Tax=Magnetospirillum m... [more]
U3B5M5_PSEA47.750e-544.59Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122780contigM-pyrifera_M_contig122780:277..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.432508-CDS-M-pyrifera_M_contig122780:276..5251622815746.432508-CDS-M-pyrifera_M_contig122780:276..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122780 277..525 -
1692277549.9118505-CDS-M-pyrifera_M_contig122780:276..5251692277549.9118505-CDS-M-pyrifera_M_contig122780:276..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122780 277..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122780.4676.1prot_M-pyrifera_M_contig122780.4676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122780 277..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122780.4676.1

>prot_M-pyrifera_M_contig122780.4676.1 ID=prot_M-pyrifera_M_contig122780.4676.1|Name=mRNA_M-pyrifera_M_contig122780.4676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
LTDDELAAGGLAPVQAFMRTKASKNAIRQRRAKAKKEAGADGATPSKQLN
IIAPADDDARAALKTTAQRLIDGDLSPSDLDVM
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mRNA from alignment at M-pyrifera_M_contig122780:277..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122780.4676.1 ID=mRNA_M-pyrifera_M_contig122780.4676.1|Name=mRNA_M-pyrifera_M_contig122780.4676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig122780:277..525- (Macrocystis pyrifera P11B4 male)
CTCACAGATGATGAACTTGCAGCTGGTGGCCTCGCACCTGTGCAGGCTTT
CATGCGCACGAAAGCATCAAAGAACGCGATCCGCCAGCGCCGCGCAAAAG
CGAAGAAAGAGGCGGGCGCGGACGGAGCAACACCATCGAAACAGTTGAAC
ATCATCGCACCTGCGGACGATGACGCCAGAGCCGCTTTGAAAACTACGGC
CCAGAGATTAATTGATGGCGACTTGTCACCGTCAGACCTGGATGTGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122780:277..525-

>mRNA_M-pyrifera_M_contig122780.4676.1 ID=mRNA_M-pyrifera_M_contig122780.4676.1|Name=mRNA_M-pyrifera_M_contig122780.4676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig122780:277..525- (Macrocystis pyrifera P11B4 male)
CTCACAGATGATGAACTTGCAGCTGGTGGCCTCGCACCTGTGCAGGCTTT
CATGCGCACGAAAGCATCAAAGAACGCGATCCGCCAGCGCCGCGCAAAAG
CGAAGAAAGAGGCGGGCGCGGACGGAGCAACACCATCGAAACAGTTGAAC
ATCATCGCACCTGCGGACGATGACGCCAGAGCCGCTTTGAAAACTACGGC
CCAGAGATTAATTGATGGCGACTTGTCACCGTCAGACCTGGATGTGATGC
TCACAGATGATGAACTTGCAGCTGGTGGCCTCGCACCTGTGCAGGCTTTC
ATGCGCACGAAAGCATCAAAGAACGCGATCCGCCAGCGCCGCGCAAAAGC
GAAGAAAGAGGCGGGCGCGGACGGAGCAACACCATCGAAACAGTTGAACA
TCATCGCACCTGCGGACGATGACGCCAGAGCCGCTTTGAAAACTACGGCC
CAGAGATTAATTGATGGCGACTTGTCACCGTCAGACCTGGATGTGATG
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