mRNA_M-pyrifera_M_contig122777.4675.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122777.4675.1
Unique NamemRNA_M-pyrifera_M_contig122777.4675.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122777.4675.1 vs. uniprot
Match: A0A7V7EBX4_9BACT (VWA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V7EBX4_9BACT)

HSP 1 Score: 111 bits (278), Expect = 1.060e-26
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    4 RSVYFSQTERTGVYEIDVGESTLPYAVNVLDRSESAIKPAEALELGRATVEAVEGRVRQNRELWTWFLVGALLFFCVEWWIFSRRAW 264
            R V+F+ TE+ GVY +   + T  YAVN+ DR ESAI PAEAL+LGR  VEA  GRV+QNRELW W ++  +L  C EWW++SRRAW
Sbjct:  544 RPVFFAGTEKAGVYAVTRADETEQYAVNLADRVESAIAPAEALQLGRVEVEAERGRVKQNRELWRWLVLAGILVLCFEWWVYSRRAW 630
[Close]
BLAST of mRNA_M-pyrifera_M_contig122777.4675.1 vs. uniprot
Match: A0A7V0YVG8_9BACT (VWA domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7V0YVG8_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 6.440e-7
Identity = 24/81 (29.63%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   16 FSQTERTGVYEIDVGESTLPYAVNVLDRSESAIKPAEALELGRATVEAVEGRVRQNRELWTWFLVGALLFFCVEWWIFSRR 258
            F++T+  G+Y++        ++VN+L+ +ES IKP + + +     +  +     NRELW+ F++ A++    EWW++ RR
Sbjct:  539 FAETDIAGIYQVIGKGIDEKFSVNLLNEAESDIKPIDKITISGQEEQVTDSSWTINRELWSIFILIAVILLAFEWWVYHRR 619
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122777.4675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V7EBX4_9BACT1.060e-2657.47VWA domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7V0YVG8_9BACT6.440e-729.63VWA domain-containing protein n=1 Tax=Candidatus P... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122777contigM-pyrifera_M_contig122777:240..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog530564.Psta_2131
Hectar predicted targeting categoryother localisation
EggNOG free text desc.von Willebrand factor type A
EggNOG OGs2IXP0@203682,COG2304@1,COG2304@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.3966806-CDS-M-pyrifera_M_contig122777:239..5091622815746.3966806-CDS-M-pyrifera_M_contig122777:239..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122777 240..509 -
1692277549.8999388-CDS-M-pyrifera_M_contig122777:239..5091692277549.8999388-CDS-M-pyrifera_M_contig122777:239..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122777 240..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122777.4675.1prot_M-pyrifera_M_contig122777.4675.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122777 240..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122777.4675.1

>prot_M-pyrifera_M_contig122777.4675.1 ID=prot_M-pyrifera_M_contig122777.4675.1|Name=mRNA_M-pyrifera_M_contig122777.4675.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MRSVYFSQTERTGVYEIDVGESTLPYAVNVLDRSESAIKPAEALELGRAT
VEAVEGRVRQNRELWTWFLVGALLFFCVEWWIFSRRAWA*
back to top

mRNA from alignment at M-pyrifera_M_contig122777:240..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122777.4675.1 ID=mRNA_M-pyrifera_M_contig122777.4675.1|Name=mRNA_M-pyrifera_M_contig122777.4675.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig122777:240..509- (Macrocystis pyrifera P11B4 male)
ATGCGATCCGTATATTTCAGCCAAACGGAACGAACCGGTGTCTACGAAAT
TGATGTGGGGGAGAGTACATTGCCCTACGCCGTTAATGTATTGGATCGAT
CCGAATCGGCGATCAAACCGGCCGAAGCACTCGAACTGGGTCGCGCGACG
GTTGAGGCGGTCGAAGGTCGTGTACGTCAAAACCGCGAACTTTGGACGTG
GTTTCTCGTGGGAGCGTTGCTGTTTTTTTGTGTTGAATGGTGGATATTCA
GTCGGCGGGCGTGGGCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122777:240..509-

>mRNA_M-pyrifera_M_contig122777.4675.1 ID=mRNA_M-pyrifera_M_contig122777.4675.1|Name=mRNA_M-pyrifera_M_contig122777.4675.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig122777:240..509- (Macrocystis pyrifera P11B4 male)
ATGCGATCCGTATATTTCAGCCAAACGGAACGAACCGGTGTCTACGAAAT
TGATGTGGGGGAGAGTACATTGCCCTACGCCGTTAATGTATTGGATCGAT
CCGAATCGGCGATCAAACCGGCCGAAGCACTCGAACTGGGTCGCGCGACG
GTTGAGGCGGTCGAAGGTCGTGTACGTCAAAACCGCGAACTTTGGACGTG
GTTTCTCGTGGGAGCGTTGCTGTTTTTTTGTGTTGAATGGTGGATATTCA
GTCGGCGGGCGTGGGCATGAATGCGATCCGTATATTTCAGCCAAACGGAA
CGAACCGGTGTCTACGAAATTGATGTGGGGGAGAGTACATTGCCCTACGC
CGTTAATGTATTGGATCGATCCGAATCGGCGATCAAACCGGCCGAAGCAC
TCGAACTGGGTCGCGCGACGGTTGAGGCGGTCGAAGGTCGTGTACGTCAA
AACCGCGAACTTTGGACGTGGTTTCTCGTGGGAGCGTTGCTGTTTTTTTG
TGTTGAATGGTGGATATTCAGTCGGCGGGCGTGGGCATGA
back to top