mRNA_M-pyrifera_M_contig122757.4670.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122757.4670.1
Unique NamemRNA_M-pyrifera_M_contig122757.4670.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122757.4670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122757contigM-pyrifera_M_contig122757:17..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog55529.EKX33094
Hectar predicted targeting categoryother localisation
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.2034202-CDS-M-pyrifera_M_contig122757:16..2891622815746.2034202-CDS-M-pyrifera_M_contig122757:16..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122757 17..289 +
1692277549.8191507-CDS-M-pyrifera_M_contig122757:16..2891692277549.8191507-CDS-M-pyrifera_M_contig122757:16..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122757 17..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122757.4670.1prot_M-pyrifera_M_contig122757.4670.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122757 17..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122757.4670.1

>prot_M-pyrifera_M_contig122757.4670.1 ID=prot_M-pyrifera_M_contig122757.4670.1|Name=mRNA_M-pyrifera_M_contig122757.4670.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
VVVDGQDGKLNTLFSYAPPRILGFFPAVLSPAGGEALMLYGEHFGVQDFQ
PVAQISGVPCRETRWISSTRLTCVTPELIGRDMIVNVTLRG
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mRNA from alignment at M-pyrifera_M_contig122757:17..289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122757.4670.1 ID=mRNA_M-pyrifera_M_contig122757.4670.1|Name=mRNA_M-pyrifera_M_contig122757.4670.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig122757:17..289+ (Macrocystis pyrifera P11B4 male)
GTGGTCGTGGACGGCCAGGACGGAAAACTCAACACCCTCTTCTCCTATGC
TCCTCCGCGCATCTTGGGGTTCTTCCCCGCCGTTCTCTCCCCTGCTGGAG
GCGAAGCGCTGATGCTGTACGGAGAGCACTTTGGCGTCCAGGACTTCCAG
CCTGTGGCGCAGATCTCTGGGGTGCCTTGTCGCGAAACGCGGTGGATCTC
GTCCACGCGCCTCACGTGCGTCACTCCCGAGCTGATTGGCCGTGACATGA
TCGTCAACGTCACGCTACGGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122757:17..289+

>mRNA_M-pyrifera_M_contig122757.4670.1 ID=mRNA_M-pyrifera_M_contig122757.4670.1|Name=mRNA_M-pyrifera_M_contig122757.4670.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig122757:17..289+ (Macrocystis pyrifera P11B4 male)
GTGGTCGTGGACGGCCAGGACGGAAAACTCAACACCCTCTTCTCCTATGC
TCCTCCGCGCATCTTGGGGTTCTTCCCCGCCGTTCTCTCCCCTGCTGGAG
GCGAAGCGCTGATGCTGTACGGAGAGCACTTTGGCGTCCAGGACTTCCAG
CCTGTGGCGCAGATCTCTGGGGTGCCTTGTCGCGAAACGCGGTGGATCTC
GTCCACGCGCCTCACGTGCGTCACTCCCGAGCTGATTGGCCGTGACATGA
TCGTCAACGTCACGCTACGGGGCGTGGTCGTGGACGGCCAGGACGGAAAA
CTCAACACCCTCTTCTCCTATGCTCCTCCGCGCATCTTGGGGTTCTTCCC
CGCCGTTCTCTCCCCTGCTGGAGGCGAAGCGCTGATGCTGTACGGAGAGC
ACTTTGGCGTCCAGGACTTCCAGCCTGTGGCGCAGATCTCTGGGGTGCCT
TGTCGCGAAACGCGGTGGATCTCGTCCACGCGCCTCACGTGCGTCACTCC
CGAGCTGATTGGCCGTGACATGATCGTCAACGTCACGCTACGGGGC
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