mRNA_M-pyrifera_M_contig122726.4668.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122726.4668.1
Unique NamemRNA_M-pyrifera_M_contig122726.4668.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A1R2CZ17_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CZ17_9CILI)

HSP 1 Score: 72.4 bits (176), Expect = 2.510e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   34 PKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHLIF 231
            P + G+L+  RS ++R   P+R+NLDRR L+ +PLLEGE RLRLLN Q NLIS I NL  L +LIF
Sbjct:   94 PGLTGVLVVYRSPSERNTNPERLNLDRRDLTQMPLLEGEERLRLLNYQHNLISKIENLLSLPNLIF 159          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A1R2C674_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C674_9CILI)

HSP 1 Score: 72.4 bits (176), Expect = 2.510e-12
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   34 PKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHLIF 231
            P +PG+L+  R  ++R   P+R+NLDRR L+ +PLLEGE RLRLLN Q N IS I NL  L +LIF
Sbjct:   99 PGLPGVLVVYRKPSERNSNPERLNLDRRELTQMPLLEGEERLRLLNYQHNFISKIENLLSLPNLIF 164          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A0M0K973_9EUKA (Leucine-rich repeat-containing protein 49 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K973_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 8.330e-12
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   55 IAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHLIF 231
            +  RS+A+R   P+R+NLDRRGL++ PLL+GE RLRLLN Q N I+ ISNL  L +LIF
Sbjct:    6 VVSRSQAERLASPERLNLDRRGLTACPLLQGEERLRLLNYQNNAIAEISNLHTLPYLIF 64          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A3N0Y7R0_ANAGA (Leucine-rich repeat-containing protein 49 n=3 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0Y7R0_ANAGA)

HSP 1 Score: 67.4 bits (163), Expect = 1.440e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   76 DRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHLIF 231
            D   CP+R++LDRRGL+S+P L+G  +LRLLNMQ NLIS + +L HL HL+F
Sbjct:  154 DITSCPERLDLDRRGLTSIPDLDGSEKLRLLNMQHNLISHLQDLVHLRHLVF 205          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A7S3MZQ2_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3MZQ2_9SPIT)

HSP 1 Score: 66.6 bits (161), Expect = 2.320e-10
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   34 PKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHLI 228
            P++PG+L+  R  ++R   P R+NLD+R L+ +PLLEGE RLRLLN+Q N I  I NL  L  LI
Sbjct:  100 PQIPGVLVVYRKPSERNANPDRLNLDKRELNHMPLLEGEERLRLLNLQHNHIQKIENLVSLPALI 164          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A3M6U5U5_POCDA (Uncharacterized protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6U5U5_POCDA)

HSP 1 Score: 65.1 bits (157), Expect = 9.330e-10
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    7 PAQATVF-QSPKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHL 225
            P    +F +SP  PG+ I  R   +R+  P R+NLDRR L++ P+LEGE  LRLLN Q NLIS +S+L +L  L
Sbjct:  158 PGDRVIFAESPSFPGVPIVYRLPEERQANPDRLNLDRRRLTTCPILEGEDYLRLLNFQHNLISRVSHLENLKRL 231          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A7S1XLY3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLY3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.490e-10
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 PAQATVFQSPK-VPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHLIF 231
            P+   VF   +  P +L+  R+E +R   P+R+NLDRR L+S P+LE E RL+LLN Q N IS+++ L  L++LIF
Sbjct:  223 PSDGIVFSHVRGQPSVLVVYRTEGERNANPERLNLDRRQLTSCPILENEDRLKLLNYQNNYISSVTALEPLTNLIF 298          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A1W0A1R4_9STRA (Outer Dynein Arm Light Chain 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1R4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-9
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   13 QATVFQSPKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTISNLTHLSHL 225
            + T  ++P +PG+ +  RS+  R   P+R+NLDRR L  +PLLEGE  LRLLN+Q N I  I NL  L +L
Sbjct:  243 EITFGETPDIPGVPVVFRSQKSRNSDPERLNLDRRALKIIPLLEGEHLLRLLNLQNNGIVGIDNLLGLPNL 313          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: Q7PYM5_ANOGA (AGAP002013-PA n=8 Tax=gambiae species complex TaxID=44542 RepID=Q7PYM5_ANOGA)

HSP 1 Score: 63.5 bits (153), Expect = 3.370e-9
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    4 PPAQATVFQSPKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLIS 192
            PP  +T+     VP +   +RSE DR   P R+NLDR+GLSS+PL+E EP LRLL++Q NLI+
Sbjct:  161 PPLDSTLIVQNGVPSI---RRSEKDREKHPDRVNLDRKGLSSIPLIEDEPNLRLLSLQHNLIN 220          
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Match: A0A6G0X9W4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9W4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.430e-9
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   28 QSPKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGEPRLRLLNMQGNLISTI 198
            ++P +PG+ +  RSE  +   P+R+NLDRR L  +PLLEGE  LRLLN+Q NLI+TI
Sbjct:  273 ETPDIPGVPVVYRSERAKSANPERLNLDRRSLKVMPLLEGEHMLRLLNLQNNLITTI 329          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122726.4668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R2CZ17_9CILI2.510e-1257.58Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1R2C674_9CILI2.510e-1256.06Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A0M0K973_9EUKA8.330e-1259.32Leucine-rich repeat-containing protein 49 (Fragmen... [more]
A0A3N0Y7R0_ANAGA1.440e-1059.62Leucine-rich repeat-containing protein 49 n=3 Tax=... [more]
A0A7S3MZQ2_9SPIT2.320e-1052.31Hypothetical protein (Fragment) n=2 Tax=Strombidiu... [more]
A0A3M6U5U5_POCDA9.330e-1048.65Uncharacterized protein n=3 Tax=Pocilloporidae Tax... [more]
A0A7S1XLY3_9STRA9.490e-1046.05Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1W0A1R4_9STRA1.270e-947.89Outer Dynein Arm Light Chain 1 n=1 Tax=Thraustothe... [more]
Q7PYM5_ANOGA3.370e-952.38AGAP002013-PA n=8 Tax=gambiae species complex TaxI... [more]
A0A6G0X9W4_9STRA4.430e-954.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122726contigM-pyrifera_M_contig122726:37..480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.4
Seed ortholog evalue5.4e-09
Seed eggNOG ortholog7719.XP_002130354.1
Preferred nameLRRC49
KEGG koko:K16606
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0061564,GO:0071840,GO:0097485,GO:0120036,GO:0120039
EggNOG free text desc.Leucine-rich repeat
EggNOG OGs38DJ0@33154,3BIGH@33208,3D10F@33213,483UJ@7711,COG4886@1,KOG0531@2759
COG Functional cat.T
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.1003408-CDS-M-pyrifera_M_contig122726:36..2481622815746.1003408-CDS-M-pyrifera_M_contig122726:36..248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122726 37..248 +
1692277549.7551723-CDS-M-pyrifera_M_contig122726:36..2481692277549.7551723-CDS-M-pyrifera_M_contig122726:36..248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122726 37..248 +
1622815746.1109097-CDS-M-pyrifera_M_contig122726:317..4801622815746.1109097-CDS-M-pyrifera_M_contig122726:317..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122726 318..480 +
1692277549.776153-CDS-M-pyrifera_M_contig122726:317..4801692277549.776153-CDS-M-pyrifera_M_contig122726:317..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122726 318..480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122726.4668.1prot_M-pyrifera_M_contig122726.4668.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122726 37..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122726.4668.1

>prot_M-pyrifera_M_contig122726.4668.1 ID=prot_M-pyrifera_M_contig122726.4668.1|Name=mRNA_M-pyrifera_M_contig122726.4668.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
LPPAQATVFQSPKVPGLLIAKRSEADRRDCPQRINLDRRGLSSVPLLEGE
PRLRLLNMQGNLISTISNLTHLSHLIFLDLYANRITRLSGLAALTSLRVL
MVGRNNVSKVDGLSTLKSLDVLDLH
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mRNA from alignment at M-pyrifera_M_contig122726:37..480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122726.4668.1 ID=mRNA_M-pyrifera_M_contig122726.4668.1|Name=mRNA_M-pyrifera_M_contig122726.4668.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig122726:37..480+ (Macrocystis pyrifera P11B4 male)
CTCCCTCCCGCGCAGGCAACTGTATTTCAATCTCCCAAGGTCCCTGGGCT TCTCATTGCGAAAAGGTCGGAAGCTGACCGCCGGGACTGTCCGCAGCGCA TCAATCTGGACCGGCGTGGTCTCAGTTCTGTGCCGCTCCTTGAAGGCGAG CCTAGACTGCGGCTACTGAACATGCAGGGCAACTTGATCAGCACCATCTC CAACCTGACACAGTTGAGTGGGGCTTGGGGCGAACGTGGCATGGCCGATT GCGTGCGTCTCACCCCTCCTCTTGCCCACAGCCTCTCCCACCTCATTTTT CTTGATTTGTATGCGAACCGAATCACCCGCTTGTCCGGACTCGCCGCGCT CACCTCACTGCGGGTCCTCATGGTTGGCCGCAACAACGTGTCCAAGGTTG ACGGACTCAGCACGCTGAAGAGCTTGGACGTGCTCGACTTGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122726:37..480+

>mRNA_M-pyrifera_M_contig122726.4668.1 ID=mRNA_M-pyrifera_M_contig122726.4668.1|Name=mRNA_M-pyrifera_M_contig122726.4668.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig122726:37..480+ (Macrocystis pyrifera P11B4 male)
CTCCCTCCCGCGCAGGCAACTGTATTTCAATCTCCCAAGGTCCCTGGGCT
TCTCATTGCGAAAAGGTCGGAAGCTGACCGCCGGGACTGTCCGCAGCGCA
TCAATCTGGACCGGCGTGGTCTCAGTTCTGTGCCGCTCCTTGAAGGCGAG
CCTAGACTGCGGCTACTGAACATGCAGGGCAACTTGATCAGCACCATCTC
CAACCTGACACACTCCCTCCCGCGCAGGCAACTGTATTTCAATCTCCCAA
GGTCCCTGGGCTTCTCATTGCGAAAAGGTCGGAAGCTGACCGCCGGGACT
GTCCGCAGCGCATCAATCTGGACCGGCGTGGTCTCAGTTCTGTGCCGCTC
CTTGAAGGCGAGCCTAGACTGCGGCTACTGAACATGCAGGGCAACTTGAT
CAGCACCATCTCCAACCTGACACACCTCTCCCACCTCATTTTTCTTGATT
TGTATGCGAACCGAATCACCCGCTTGTCCGGACTCGCCGCGCTCACCTCA
CTGCGGGTCCTCATGGTTGGCCGCAACAACGTGTCCAAGGTTGACGGACT
CAGCACGCTGAAGAGCTTGGACGTGCTCGACTTGCACCCTCTCCCACCTC
ATTTTTCTTGATTTGTATGCGAACCGAATCACCCGCTTGTCCGGACTCGC
CGCGCTCACCTCACTGCGGGTCCTCATGGTTGGCCGCAACAACGTGTCCA
AGGTTGACGGACTCAGCACGCTGAAGAGCTTGGACGTGCTCGACTTGCAC
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