mRNA_M-pyrifera_M_contig122715.4665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122715.4665.1
Unique NamemRNA_M-pyrifera_M_contig122715.4665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122715.4665.1 vs. uniprot
Match: UPI00159F9F6A (TetR/AcrR family transcriptional regulator n=1 Tax=Parasphingopyxis sp. CP4 TaxID=2724527 RepID=UPI00159F9F6A)

HSP 1 Score: 82.0 bits (201), Expect = 4.220e-16
Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 1 
Query:    1 LIGRKEAIVVAMYAETVDELARRIRQLDGGDPRLQVESLITVVAGLFAENEAYARAAVIAVEQLNYTESSRARVAHFYQWGEGVVTDGCRACGEAGLLRGQIDPALLGAQIFHTFLRNIRAWAYGHMNLDEFRRTGLIDVRIGLAADAVDTFRKRLARDIDSL 489
            LIG K+A+++A+    V  +  ++   +      Q E+++     +FA++E + RAA+IA EQ+ +    R       +    +  + CRA    GLLRG ID  +LG+Q++  +   +  W +  +++ EFR   L    + LAADA   F   L + I+ L
Sbjct:   53 LIGSKDAVLMALVERAVVRIEEQLEDFESAPAIDQAEAVVIQSTDIFADDENFYRAAMIAGEQVGFHSRERLDAHWIDERSTQMAANACRAGLREGLLRGTIDSDMLGSQMYAIYRTCLHDWVHQRISIAEFRHNALQGFYVCLAADATPEFHAELVKKIEQL 215
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122715.4665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00159F9F6A4.220e-1628.83TetR/AcrR family transcriptional regulator n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122715contigM-pyrifera_M_contig122715:3..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog1282876.BAOK01000001_gene1320
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial regulatory proteins, tetR family
EggNOG OGs1NJ7X@1224,2UNRW@28211,COG1309@1,COG1309@2
COG Functional cat.K
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.9691982-CDS-M-pyrifera_M_contig122715:2..4971622815745.9691982-CDS-M-pyrifera_M_contig122715:2..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122715 3..497 +
1692277549.6894026-CDS-M-pyrifera_M_contig122715:2..4971692277549.6894026-CDS-M-pyrifera_M_contig122715:2..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122715 3..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122715.4665.1prot_M-pyrifera_M_contig122715.4665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122715 3..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122715.4665.1

>prot_M-pyrifera_M_contig122715.4665.1 ID=prot_M-pyrifera_M_contig122715.4665.1|Name=mRNA_M-pyrifera_M_contig122715.4665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
LIGRKEAIVVAMYAETVDELARRIRQLDGGDPRLQVESLITVVAGLFAEN
EAYARAAVIAVEQLNYTESSRARVAHFYQWGEGVVTDGCRACGEAGLLRG
QIDPALLGAQIFHTFLRNIRAWAYGHMNLDEFRRTGLIDVRIGLAADAVD
TFRKRLARDIDSLAA
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mRNA from alignment at M-pyrifera_M_contig122715:3..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122715.4665.1 ID=mRNA_M-pyrifera_M_contig122715.4665.1|Name=mRNA_M-pyrifera_M_contig122715.4665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig122715:3..497+ (Macrocystis pyrifera P11B4 male)
CTCATCGGGCGCAAGGAAGCGATCGTCGTCGCGATGTACGCGGAAACCGT
TGACGAGCTTGCCCGCCGCATCCGGCAACTCGACGGTGGCGATCCGCGAC
TACAGGTCGAGTCGCTGATCACGGTGGTCGCCGGGTTGTTCGCGGAGAAC
GAAGCCTATGCCCGGGCGGCCGTCATCGCCGTCGAGCAACTCAATTACAC
CGAATCGAGCCGCGCGCGGGTTGCCCATTTCTACCAGTGGGGTGAAGGCG
TCGTTACCGACGGCTGCCGCGCCTGCGGCGAAGCGGGCTTGTTGCGCGGA
CAAATCGATCCGGCACTGCTCGGCGCGCAAATTTTCCACACGTTTCTGCG
CAATATCCGCGCCTGGGCCTACGGCCACATGAATCTCGACGAGTTCCGCC
GTACCGGTTTGATCGACGTCCGTATCGGCCTCGCTGCCGACGCCGTCGAC
ACGTTTCGTAAACGCCTTGCGCGCGATATCGACAGTCTCGCCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122715:3..497+

>mRNA_M-pyrifera_M_contig122715.4665.1 ID=mRNA_M-pyrifera_M_contig122715.4665.1|Name=mRNA_M-pyrifera_M_contig122715.4665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig122715:3..497+ (Macrocystis pyrifera P11B4 male)
CTCATCGGGCGCAAGGAAGCGATCGTCGTCGCGATGTACGCGGAAACCGT
TGACGAGCTTGCCCGCCGCATCCGGCAACTCGACGGTGGCGATCCGCGAC
TACAGGTCGAGTCGCTGATCACGGTGGTCGCCGGGTTGTTCGCGGAGAAC
GAAGCCTATGCCCGGGCGGCCGTCATCGCCGTCGAGCAACTCAATTACAC
CGAATCGAGCCGCGCGCGGGTTGCCCATTTCTACCAGTGGGGTGAAGGCG
TCGTTACCGACGGCTGCCGCGCCTGCGGCGAAGCGGGCTTGTTGCGCGGA
CAAATCGATCCGGCACTGCTCGGCGCGCAAATTTTCCACACGTTTCTGCG
CAATATCCGCGCCTGGGCCTACGGCCACATGAATCTCGACGAGTTCCGCC
GTACCGGTTTGATCGACGTCCGTATCGGCCTCGCTGCCGACGCCGTCGAC
ACGTTTCGTAAACGCCTTGCGCGCGATATCGACAGTCTCGCCGCACTCAT
CGGGCGCAAGGAAGCGATCGTCGTCGCGATGTACGCGGAAACCGTTGACG
AGCTTGCCCGCCGCATCCGGCAACTCGACGGTGGCGATCCGCGACTACAG
GTCGAGTCGCTGATCACGGTGGTCGCCGGGTTGTTCGCGGAGAACGAAGC
CTATGCCCGGGCGGCCGTCATCGCCGTCGAGCAACTCAATTACACCGAAT
CGAGCCGCGCGCGGGTTGCCCATTTCTACCAGTGGGGTGAAGGCGTCGTT
ACCGACGGCTGCCGCGCCTGCGGCGAAGCGGGCTTGTTGCGCGGACAAAT
CGATCCGGCACTGCTCGGCGCGCAAATTTTCCACACGTTTCTGCGCAATA
TCCGCGCCTGGGCCTACGGCCACATGAATCTCGACGAGTTCCGCCGTACC
GGTTTGATCGACGTCCGTATCGGCCTCGCTGCCGACGCCGTCGACACGTT
TCGTAAACGCCTTGCGCGCGATATCGACAGTCTCGCCGCA
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