mRNA_M-pyrifera_M_contig122687.4661.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122687.4661.1
Unique NamemRNA_M-pyrifera_M_contig122687.4661.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122687.4661.1 vs. uniprot
Match: D7G6I9_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 5.180e-11
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   19 QRYREILFDFSTEFKKTSAAMQRKREATELFKSSR 123
            QRYREILFDFSTEFKKTSAA+QRKR+ TELFKSSR
Sbjct:   84 QRYREILFDFSTEFKKTSAALQRKRDTTELFKSSR 118
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BLAST of mRNA_M-pyrifera_M_contig122687.4661.1 vs. uniprot
Match: A0A7S2XVV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.290e-8
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   19 QRYREILFDFSTEFKKTSAAMQRKREATELFK 114
            QRYREILFD+STEFKKTSAA+QRKR+  ELF+
Sbjct:  108 QRYREILFDYSTEFKKTSAAIQRKRQTDELFR 139
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BLAST of mRNA_M-pyrifera_M_contig122687.4661.1 vs. uniprot
Match: A0A6S9HNZ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HNZ6_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 1.580e-7
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   19 QRYREILFDFSTEFKKTSAAMQRKREATELFKSSR 123
            QRYREILFD++TEFK TS A+QRKRE+ ELF+S+R
Sbjct:   92 QRYREILFDYTTEFKNTSVAIQRKRESQELFRSAR 126
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BLAST of mRNA_M-pyrifera_M_contig122687.4661.1 vs. uniprot
Match: K0R4I9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4I9_THAOC)

HSP 1 Score: 49.3 bits (116), Expect = 1.040e-5
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   19 QRYREILFDFSTEFKKTSAAMQRKREATELFKSS 120
            +RYREILFD  ++FKKTSAA+QR+REA ELF++S
Sbjct:  123 KRYREILFDCGSDFKKTSAAVQRRREARELFENS 156
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BLAST of mRNA_M-pyrifera_M_contig122687.4661.1 vs. uniprot
Match: A0A6U1TG21_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1TG21_TRICV)

HSP 1 Score: 48.1 bits (113), Expect = 3.190e-5
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   19 QRYREILFDFSTEFKKTSAAMQRKREATELFKSS 120
            +RYREILFD S +FKKTSAA+ R+REA ELF+ S
Sbjct:  125 KRYREILFDCSADFKKTSAAVARRREAMELFRGS 158
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122687.4661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G6I9_ECTSI5.180e-1191.43Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A7S2XVV4_9STRA7.290e-881.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6S9HNZ6_HETAK1.580e-774.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0R4I9_THAOC1.040e-570.59Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6U1TG21_TRICV3.190e-570.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122687contigM-pyrifera_M_contig122687:245..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7G6I9
Preferred nameGOSR1
KEGG koko:K08495
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000138,GO:0000139,GO:0000149,GO:0001101,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032879,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048209,GO:0048284,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097305,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1901700
EggNOG free text desc.regulation of vesicle targeting, to, from or within Golgi
EggNOG OGsKOG3208@1,KOG3208@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.813409-CDS-M-pyrifera_M_contig122687:244..3701622815745.813409-CDS-M-pyrifera_M_contig122687:244..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122687 245..370 -
1692277549.6350133-CDS-M-pyrifera_M_contig122687:244..3701692277549.6350133-CDS-M-pyrifera_M_contig122687:244..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122687 245..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122687.4661.1prot_M-pyrifera_M_contig122687.4661.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122687 245..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122687.4661.1

>prot_M-pyrifera_M_contig122687.4661.1 ID=prot_M-pyrifera_M_contig122687.4661.1|Name=mRNA_M-pyrifera_M_contig122687.4661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MYARPEQRYREILFDFSTEFKKTSAAMQRKREATELFKSSR*
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mRNA from alignment at M-pyrifera_M_contig122687:245..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122687.4661.1 ID=mRNA_M-pyrifera_M_contig122687.4661.1|Name=mRNA_M-pyrifera_M_contig122687.4661.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig122687:245..370- (Macrocystis pyrifera P11B4 male)
ATGTACGCGCGTCCCGAACAAAGGTATCGAGAAATCCTGTTCGATTTTTC
AACGGAGTTCAAGAAGACCTCGGCGGCGATGCAGCGCAAGCGAGAAGCGA
CCGAGCTGTTCAAGTCATCCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122687:245..370-

>mRNA_M-pyrifera_M_contig122687.4661.1 ID=mRNA_M-pyrifera_M_contig122687.4661.1|Name=mRNA_M-pyrifera_M_contig122687.4661.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig122687:245..370- (Macrocystis pyrifera P11B4 male)
ATGTACGCGCGTCCCGAACAAAGGTATCGAGAAATCCTGTTCGATTTTTC
AACGGAGTTCAAGAAGACCTCGGCGGCGATGCAGCGCAAGCGAGAAGCGA
CCGAGCTGTTCAAGTCATCCAGGTGAATGTACGCGCGTCCCGAACAAAGG
TATCGAGAAATCCTGTTCGATTTTTCAACGGAGTTCAAGAAGACCTCGGC
GGCGATGCAGCGCAAGCGAGAAGCGACCGAGCTGTTCAAGTCATCCAGGT
GA
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