mRNA_M-pyrifera_M_contig122553.4642.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122553.4642.1
Unique NamemRNA_M-pyrifera_M_contig122553.4642.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: UPI001580C183 (SDR family oxidoreductase n=1 Tax=Martelella limonii TaxID=1647649 RepID=UPI001580C183)

HSP 1 Score: 169 bits (428), Expect = 2.260e-50
Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 ALRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            AL+AS+RAS+INVGSIA RNGGA GSG+YAA K           KELAGD IRVNA+APGVIETPFH+ETP A +++    IPLGRLGT +DCAW+F FLASP MSGY+TGQ+ID+NGG +MP
Sbjct:  132 ALKASDRASVINVGSIAARNGGAMGSGIYAAAKSAAHSLTRSLAKELAGDGIRVNALAPGVIETPFHDETPHAAMNAALNTIPLGRLGTAQDCAWSFAFLASPTMSGYITGQVIDINGGQYMP 254          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: UPI000D07DD55 (SDR family oxidoreductase n=1 Tax=Martelella mediterranea TaxID=293089 RepID=UPI000D07DD55)

HSP 1 Score: 169 bits (427), Expect = 3.200e-50
Identity = 82/123 (66.67%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 ALRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            AL+AS+RAS+IN+GSIAGRNGGA GSG+YAA K           +E+A D +RVNA+APGVIETPFH++TP+A L++    IPLGRLG PEDCAW+FVFLASP MSGY+TGQIID+NGG  MP
Sbjct:  132 ALKASDRASVINLGSIAGRNGGAPGSGIYAAAKAAVHSLTRALAREMAPDGVRVNAIAPGVIETPFHDDTPDAVLEAALNAIPLGRLGVPEDCAWSFVFLASPTMSGYITGQIIDINGGQLMP 254          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A0D5LQX7_MAREN (Oxidoreductase n=1 Tax=Martelella endophytica TaxID=1486262 RepID=A0A0D5LQX7_MAREN)

HSP 1 Score: 167 bits (423), Expect = 1.290e-49
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 ALRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            AL+AS RAS+IN+GSIAGRNGGA GSG+YAA K           KELA D IRVNA+APGVI TPFH++TP+A L+S   +IPLGRLGT ++CAW+FVF ASP MSGY+TGQI+D+NGG FMP
Sbjct:  132 ALKASERASVINLGSIAGRNGGAPGSGIYAAAKAAVHSLTRSLAKELAADGIRVNALAPGVITTPFHDDTPKANLESALASIPLGRLGTADECAWSFVFFASPTMSGYITGQILDINGGQFMP 254          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A7W6KGN6_9HYPH (3-oxoacyl-[acyl-carrier protein] reductase n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7W6KGN6_9HYPH)

HSP 1 Score: 165 bits (417), Expect = 1.040e-48
Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 ALRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            AL+AS+RAS+IN+GSIAGRNGGA GSG+YAA K           +E+A D +RVNA+APGVIETPFH+ETPE+ L++    IPL RLGT EDCAW+FVFLASP M+GY+TGQI+D+NGG  MP
Sbjct:  132 ALKASDRASVINLGSIAGRNGGAPGSGLYAAAKAAVHSLTRALAREMAADGVRVNAIAPGVIETPFHDETPESALNAALAAIPLARLGTAEDCAWSFVFLASPTMAGYITGQILDINGGQLMP 254          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A1U9YYC5_9HYPH (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=4 Tax=Martelella TaxID=293088 RepID=A0A1U9YYC5_9HYPH)

HSP 1 Score: 162 bits (410), Expect = 1.190e-47
Identity = 82/122 (67.21%), Postives = 96/122 (78.69%), Query Frame = 1
Query:    4 LRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            LR S+RASIIN+GSIA R+GG  GSGVYAA K           KELAGD IRVNA+APGVIETPFH+ETP A +++    IPLGRLGT EDCAW+FVFLASP M+G++TGQIID+NGG +MP
Sbjct:  133 LRESDRASIINLGSIAARHGGNKGSGVYAAAKAAVHSLTRSLAKELAGDGIRVNALAPGVIETPFHDETPHAAMNAALNAIPLGRLGTAEDCAWSFVFLASPTMAGFITGQIIDINGGQYMP 254          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A259KEB1_9HYPH (Oxidoreductase (Fragment) n=2 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A259KEB1_9HYPH)

HSP 1 Score: 152 bits (383), Expect = 4.460e-44
Identity = 79/122 (64.75%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    4 LRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            L  S   +IINVGSIAGRNGGA GSG+YAA K           KE A D IRVNAVAPG I TPFH  TP  T +++R  IP+GRLGT EDCAW F FLAS +MSGY+TGQIIDVNGG FMP
Sbjct:   92 LSRSAHGAIINVGSIAGRNGGAPGSGLYAAAKAAVHSLTRSMAKEFAKDAIRVNAVAPGFISTPFHATTPLDTQEAVRKTIPMGRLGTAEDCAWIFAFLASQEMSGYITGQIIDVNGGQFMP 213          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A516H3Q8_9PROT (SDR family oxidoreductase n=1 Tax=Ferrovibrio terrae TaxID=2594003 RepID=A0A516H3Q8_9PROT)

HSP 1 Score: 146 bits (369), Expect = 1.670e-41
Identity = 79/122 (64.75%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    4 LRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            L  S  ASIIN GSIAGRNGGA GSGVYAA K           KE A   IRVNA+APGVIETPFH  T    LDS+   IP+GRLG  EDC W  VFLASP +SGY+TGQIIDVNGG FMP
Sbjct:  130 LAKSAMASIINTGSIAGRNGGAPGSGVYAATKAAVHSLTRSMAKEFAPAGIRVNAIAPGVIETPFHATTSAEFLDSVCRTIPMGRLGRAEDCCWPIVFLASPMLSGYVTGQIIDVNGGQFMP 251          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A1K2I2A7_9HYPH (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Devosia enhydra TaxID=665118 RepID=A0A1K2I2A7_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 1.860e-38
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    4 LRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            L+AS + +I+N GSIA R+GG  GSG+YAA K           KE A D IR NAVAPGVI TP H+ TP+A +++M   I +GR GTPEDC   ++FLASP ++GY+TGQIIDVNGG +MP
Sbjct:  133 LKASGKGAIVNTGSIAARHGGGRGSGLYAAAKAGVHSLTRTMAKEFAVDGIRANAVAPGVITTPLHDTTPKAAMETMLAQIVMGRFGTPEDCVGAYLFLASPTLAGYITGQIIDVNGGQYMP 254          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A858X8V5_9HYPH (SDR family oxidoreductase n=2 Tax=Starkeya sp. ORNL1 TaxID=2709380 RepID=A0A858X8V5_9HYPH)

HSP 1 Score: 137 bits (345), Expect = 7.220e-38
Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 ALRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            ALRAS R S+IN GS+AGRNGG AGS +YAA K            E A D IRVNA+APG+I TPFH  TP   LDS++ ++PL RLG  ED   +++FL S +MSGY+TG IIDVNGG  MP
Sbjct:  131 ALRASGRGSVINTGSVAGRNGGRAGSSIYAAAKAAVHALSKGMAMEFAADNIRVNAIAPGLILTPFHEGTPRERLDSVKASVPLNRLGLAEDLVGSYLFLGSTQMSGYITGAIIDVNGGRLMP 253          
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Match: A0A5B9DKH4_9HYPH (SDR family oxidoreductase n=2 Tax=Devosiaceae TaxID=2831106 RepID=A0A5B9DKH4_9HYPH)

HSP 1 Score: 136 bits (343), Expect = 1.440e-37
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    4 LRASNRASIINVGSIAGRNGGAAGSGVYAAVKXXXXXXXXXXXKELAGDCIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFLASPKMSGYLTGQIIDVNGGLFMP 369
            L+AS +AS+IN GSIAGR GG +GS VYAA K           +E A D IRVN VAPG I TPFH+ TPE+  ++ R  IP+ RLGT EDC   +VFLAS  MSGY+TGQIIDVNGG  MP
Sbjct:  132 LKASGKASVINTGSIAGRFGGFSGSTVYAAAKAAVHSISRNAAREFAMDGIRVNTVAPGFIITPFHDRTPESVRETARAQIPMQRLGTAEDCVGAYVFLASEAMSGYITGQIIDVNGGQLMP 253          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122553.4642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001580C1832.260e-5067.48SDR family oxidoreductase n=1 Tax=Martelella limon... [more]
UPI000D07DD553.200e-5066.67SDR family oxidoreductase n=1 Tax=Martelella medit... [more]
A0A0D5LQX7_MAREN1.290e-4966.67Oxidoreductase n=1 Tax=Martelella endophytica TaxI... [more]
A0A7W6KGN6_9HYPH1.040e-4865.043-oxoacyl-[acyl-carrier protein] reductase n=5 Tax... [more]
A0A1U9YYC5_9HYPH1.190e-4767.213-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A259KEB1_9HYPH4.460e-4464.75Oxidoreductase (Fragment) n=2 Tax=unclassified Hyp... [more]
A0A516H3Q8_9PROT1.670e-4164.75SDR family oxidoreductase n=1 Tax=Ferrovibrio terr... [more]
A0A1K2I2A7_9HYPH1.860e-3855.743-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]
A0A858X8V5_9HYPH7.220e-3856.91SDR family oxidoreductase n=2 Tax=Starkeya sp. ORN... [more]
A0A5B9DKH4_9HYPH1.440e-3759.02SDR family oxidoreductase n=2 Tax=Devosiaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122553contigM-pyrifera_M_contig122553:13..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score164.9
Seed ortholog evalue2.5e-38
Seed eggNOG ortholog1122214.AQWH01000009_gene1897
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.KR domain
EggNOG OGs1QIZD@1224,2PM1U@255475,2V7QN@28211,COG1028@1,COG1028@2
COG Functional cat.IQ
Best tax levelAurantimonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.0391026-CDS-M-pyrifera_M_contig122553:12..3841622815745.0391026-CDS-M-pyrifera_M_contig122553:12..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122553 13..384 +
1692277549.2608685-CDS-M-pyrifera_M_contig122553:12..3841692277549.2608685-CDS-M-pyrifera_M_contig122553:12..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122553 13..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122553.4642.1prot_M-pyrifera_M_contig122553.4642.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122553 13..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122553.4642.1

>prot_M-pyrifera_M_contig122553.4642.1 ID=prot_M-pyrifera_M_contig122553.4642.1|Name=mRNA_M-pyrifera_M_contig122553.4642.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
ALRASNRASIINVGSIAGRNGGAAGSGVYAAVKATVHSLTRSLAKELAGD
CIRVNAVAPGVIETPFHNETPEATLDSMRLNIPLGRLGTPEDCAWTFVFL
ASPKMSGYLTGQIIDVNGGLFMP*
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mRNA from alignment at M-pyrifera_M_contig122553:13..384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122553.4642.1 ID=mRNA_M-pyrifera_M_contig122553.4642.1|Name=mRNA_M-pyrifera_M_contig122553.4642.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig122553:13..384+ (Macrocystis pyrifera P11B4 male)
GCACTCAGAGCCAGCAATCGAGCGTCGATCATCAATGTCGGCTCAATTGC TGGGCGAAATGGCGGAGCAGCAGGATCGGGCGTTTATGCTGCAGTGAAAG CCACTGTTCATTCACTAACACGTTCTCTTGCCAAGGAGTTGGCCGGTGAC TGTATTCGGGTAAACGCCGTCGCACCCGGGGTGATAGAAACACCGTTTCA CAATGAGACGCCGGAGGCGACCCTTGATTCGATGCGCCTCAACATTCCGC TTGGCCGGTTGGGTACACCAGAAGACTGTGCGTGGACATTTGTTTTTCTG GCGTCGCCCAAAATGTCGGGATACCTGACGGGCCAGATTATTGACGTCAA TGGCGGCCTGTTCATGCCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122553:13..384+

>mRNA_M-pyrifera_M_contig122553.4642.1 ID=mRNA_M-pyrifera_M_contig122553.4642.1|Name=mRNA_M-pyrifera_M_contig122553.4642.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig122553:13..384+ (Macrocystis pyrifera P11B4 male)
GCACTCAGAGCCAGCAATCGAGCGTCGATCATCAATGTCGGCTCAATTGC
TGGGCGAAATGGCGGAGCAGCAGGATCGGGCGTTTATGCTGCAGTGAAAG
CCACTGTTCATTCACTAACACGTTCTCTTGCCAAGGAGTTGGCCGGTGAC
TGTATTCGGGTAAACGCCGTCGCACCCGGGGTGATAGAAACACCGTTTCA
CAATGAGACGCCGGAGGCGACCCTTGATTCGATGCGCCTCAACATTCCGC
TTGGCCGGTTGGGTACACCAGAAGACTGTGCGTGGACATTTGTTTTTCTG
GCGTCGCCCAAAATGTCGGGATACCTGACGGGCCAGATTATTGACGTCAA
TGGCGGCCTGTTCATGCCTTGAGCACTCAGAGCCAGCAATCGAGCGTCGA
TCATCAATGTCGGCTCAATTGCTGGGCGAAATGGCGGAGCAGCAGGATCG
GGCGTTTATGCTGCAGTGAAAGCCACTGTTCATTCACTAACACGTTCTCT
TGCCAAGGAGTTGGCCGGTGACTGTATTCGGGTAAACGCCGTCGCACCCG
GGGTGATAGAAACACCGTTTCACAATGAGACGCCGGAGGCGACCCTTGAT
TCGATGCGCCTCAACATTCCGCTTGGCCGGTTGGGTACACCAGAAGACTG
TGCGTGGACATTTGTTTTTCTGGCGTCGCCCAAAATGTCGGGATACCTGA
CGGGCCAGATTATTGACGTCAATGGCGGCCTGTTCATGCCTTGA
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