mRNA_M-pyrifera_M_contig122541.4641.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122541.4641.1
Unique NamemRNA_M-pyrifera_M_contig122541.4641.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122541.4641.1 vs. uniprot
Match: A0A7S4HT08_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HT08_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 6.250e-9
Identity = 27/54 (50.00%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   13 TEFVLDQSTAEEKEEVKAQFGCTDVPDDTQFFYVVAQIVEYGLSYFPEEVCQNM 174
            TE+ L Q   ++ E++K+ FGCTDVPDDTQFFYV+AQI+++G++   + VC ++
Sbjct:  211 TEYALSQD-PQQAEQLKSLFGCTDVPDDTQFFYVLAQIIQFGIANERDLVCSSL 263
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BLAST of mRNA_M-pyrifera_M_contig122541.4641.1 vs. uniprot
Match: L8GD90_ACACA (Serine carboxypeptidase s28 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GD90_ACACA)

HSP 1 Score: 52.0 bits (123), Expect = 4.200e-5
Identity = 37/128 (28.91%), Postives = 58/128 (45.31%), Query Frame = 1 
Query:   19 FVLDQSTAEEKEEVKAQFGCTDVP--DDTQFFYVVAQIVEYGLSYFPEEVCQNMTTVAQEADASGNDD-GELVAGYGDVIASLLVKSGLSDCAKWDLAFDTSTQPGNATADYRPSFYLLCTQYGQFEV 393
            F L+ S AE +   + Q G  +     + +F YVV+ I+   + Y    +C+  + V    +A+  +     +  Y D    +          +WD A DT     +  A YRP++YL CTQ GQFEV
Sbjct:  266 FTLNSS-AEARAAYQVQCGVDEAELLPNAEFMYVVSTILMGAMGYDSINMCKTFSDVRNSDNATRLEALANYIGNYNDQNYMMF--------KQWDFALDTGGNMTDYGAGYRPTYYLKCTQLGQFEV 384
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122541.4641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4HT08_9EUKA6.250e-950.00Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8GD90_ACACA4.200e-528.91Serine carboxypeptidase s28 protein n=1 Tax=Acanth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122541contigM-pyrifera_M_contig122541:60..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.9973643-CDS-M-pyrifera_M_contig122541:59..4551622815744.9973643-CDS-M-pyrifera_M_contig122541:59..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122541 60..455 -
1692277549.2445009-CDS-M-pyrifera_M_contig122541:59..4551692277549.2445009-CDS-M-pyrifera_M_contig122541:59..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122541 60..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122541.4641.1prot_M-pyrifera_M_contig122541.4641.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122541 60..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122541.4641.1

>prot_M-pyrifera_M_contig122541.4641.1 ID=prot_M-pyrifera_M_contig122541.4641.1|Name=mRNA_M-pyrifera_M_contig122541.4641.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
ATAATEFVLDQSTAEEKEEVKAQFGCTDVPDDTQFFYVVAQIVEYGLSYF
PEEVCQNMTTVAQEADASGNDDGELVAGYGDVIASLLVKSGLSDCAKWDL
AFDTSTQPGNATADYRPSFYLLCTQYGQFEV*
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mRNA from alignment at M-pyrifera_M_contig122541:60..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122541.4641.1 ID=mRNA_M-pyrifera_M_contig122541.4641.1|Name=mRNA_M-pyrifera_M_contig122541.4641.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig122541:60..455- (Macrocystis pyrifera P11B4 male)
GCAACGGCGGCGACAGAGTTTGTCTTGGACCAATCCACCGCCGAGGAGAA
GGAGGAGGTGAAGGCGCAGTTCGGCTGCACCGACGTGCCAGACGACACGC
AGTTCTTCTATGTGGTCGCCCAGATCGTCGAGTACGGCCTCAGCTACTTC
CCGGAGGAGGTGTGCCAGAACATGACTACGGTGGCGCAGGAGGCGGACGC
CAGTGGTAACGACGATGGGGAGCTGGTGGCCGGCTACGGCGACGTCATCG
CTTCACTCCTCGTGAAGAGTGGCCTTTCCGACTGTGCCAAATGGGACTTG
GCATTCGACACGTCCACGCAGCCTGGCAACGCCACAGCTGACTACCGGCC
TTCCTTTTATCTCCTTTGCACCCAATATGGCCAGTTTGAAGTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122541:60..455-

>mRNA_M-pyrifera_M_contig122541.4641.1 ID=mRNA_M-pyrifera_M_contig122541.4641.1|Name=mRNA_M-pyrifera_M_contig122541.4641.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig122541:60..455- (Macrocystis pyrifera P11B4 male)
GCAACGGCGGCGACAGAGTTTGTCTTGGACCAATCCACCGCCGAGGAGAA
GGAGGAGGTGAAGGCGCAGTTCGGCTGCACCGACGTGCCAGACGACACGC
AGTTCTTCTATGTGGTCGCCCAGATCGTCGAGTACGGCCTCAGCTACTTC
CCGGAGGAGGTGTGCCAGAACATGACTACGGTGGCGCAGGAGGCGGACGC
CAGTGGTAACGACGATGGGGAGCTGGTGGCCGGCTACGGCGACGTCATCG
CTTCACTCCTCGTGAAGAGTGGCCTTTCCGACTGTGCCAAATGGGACTTG
GCATTCGACACGTCCACGCAGCCTGGCAACGCCACAGCTGACTACCGGCC
TTCCTTTTATCTCCTTTGCACCCAATATGGCCAGTTTGAAGTATGAGCAA
CGGCGGCGACAGAGTTTGTCTTGGACCAATCCACCGCCGAGGAGAAGGAG
GAGGTGAAGGCGCAGTTCGGCTGCACCGACGTGCCAGACGACACGCAGTT
CTTCTATGTGGTCGCCCAGATCGTCGAGTACGGCCTCAGCTACTTCCCGG
AGGAGGTGTGCCAGAACATGACTACGGTGGCGCAGGAGGCGGACGCCAGT
GGTAACGACGATGGGGAGCTGGTGGCCGGCTACGGCGACGTCATCGCTTC
ACTCCTCGTGAAGAGTGGCCTTTCCGACTGTGCCAAATGGGACTTGGCAT
TCGACACGTCCACGCAGCCTGGCAACGCCACAGCTGACTACCGGCCTTCC
TTTTATCTCCTTTGCACCCAATATGGCCAGTTTGAAGTATGA
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