mRNA_M-pyrifera_M_contig122524.4637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122524.4637.1
Unique NamemRNA_M-pyrifera_M_contig122524.4637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122524.4637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122524contigM-pyrifera_M_contig122524:23..268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.7633173-CDS-M-pyrifera_M_contig122524:22..2411622815744.7633173-CDS-M-pyrifera_M_contig122524:22..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122524 23..241 -
1692277549.1452155-CDS-M-pyrifera_M_contig122524:22..2411692277549.1452155-CDS-M-pyrifera_M_contig122524:22..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122524 23..241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.773649-UTR-M-pyrifera_M_contig122524:241..2681622815744.773649-UTR-M-pyrifera_M_contig122524:241..268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122524 242..268 -
1692277549.1530538-UTR-M-pyrifera_M_contig122524:241..2681692277549.1530538-UTR-M-pyrifera_M_contig122524:241..268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122524 242..268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122524.4637.1prot_M-pyrifera_M_contig122524.4637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122524 23..241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122524.4637.1

>prot_M-pyrifera_M_contig122524.4637.1 ID=prot_M-pyrifera_M_contig122524.4637.1|Name=mRNA_M-pyrifera_M_contig122524.4637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MLNKTMGVALGKGTDSWPVYVVDLHEVRAVFGEKLQGWNRTYAAAKKIFG
PGVSCKMARATIHVQHKSLYRES
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mRNA from alignment at M-pyrifera_M_contig122524:23..268-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122524.4637.1 ID=mRNA_M-pyrifera_M_contig122524.4637.1|Name=mRNA_M-pyrifera_M_contig122524.4637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig122524:23..268- (Macrocystis pyrifera P11B4 male)
AGTGGAAGGCCAAACAACTTCAAAATTATGCTCAACAAGACAATGGGTGT
GGCACTCGGCAAAGGAACAGACAGCTGGCCTGTCTACGTGGTGGACTTGC
ACGAGGTGCGAGCGGTGTTTGGCGAGAAGCTTCAGGGCTGGAACCGTACC
TACGCTGCTGCCAAGAAGATCTTCGGCCCCGGTGTCTCTTGCAAGATGGC
GAGGGCGACTATCCATGTGCAGCACAAGTCATTGTACCGTGAGTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122524:23..268-

>mRNA_M-pyrifera_M_contig122524.4637.1 ID=mRNA_M-pyrifera_M_contig122524.4637.1|Name=mRNA_M-pyrifera_M_contig122524.4637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig122524:23..268- (Macrocystis pyrifera P11B4 male)
ATGCTCAACAAGACAATGGGTGTGGCACTCGGCAAAGGAACAGACAGCTG
GCCTGTCTACGTGGTGGACTTGCACGAGGTGCGAGCGGTGTTTGGCGAGA
AGCTTCAGGGCTGGAACCGTACCTACGCTGCTGCCAAGAAGATCTTCGGC
CCCGGTGTCTCTTGCAAGATGGCGAGGGCGACTATCCATGTGCAGCACAA
GTCATTGTACCGTGAGTCTATGCTCAACAAGACAATGGGTGTGGCACTCG
GCAAAGGAACAGACAGCTGGCCTGTCTACGTGGTGGACTTGCACGAGGTG
CGAGCGGTGTTTGGCGAGAAGCTTCAGGGCTGGAACCGTACCTACGCTGC
TGCCAAGAAGATCTTCGGCCCCGGTGTCTCTTGCAAGATGGCGAGGGCGA
CTATCCATGTGCAGCACAAGTCATTGTACCGTGAGTCT
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