mRNA_M-pyrifera_M_contig122514.4636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122514.4636.1
Unique NamemRNA_M-pyrifera_M_contig122514.4636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A350PKN9_9BACT (FAD-dependent oxidoreductase n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A350PKN9_9BACT)

HSP 1 Score: 101 bits (251), Expect = 6.420e-24
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEA 198
            + YLI+FSN+ L+LP  W+IEQEWSGIMGFTESKS ++++I E C+L AGLSGMGVAL MNLGK+A
Sbjct:  298 KEYLINFSNDFLKLPQGWEIEQEWSGIMGFTESKSYLIEQIDENCILAAGLSGMGVALGMNLGKKA 363          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A521FK05_9BACT (Glycine/D-amino acid oxidase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521FK05_9BACT)

HSP 1 Score: 100 bits (249), Expect = 1.310e-23
Identity = 43/66 (65.15%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEA 198
            +N+L++F+N+VL+LP+ W+IE EWSGIMGFT++KSP+++ IS+ CL++AGLSGMGVAL M LGKEA
Sbjct:  298 KNHLLEFTNDVLKLPSDWEIETEWSGIMGFTQTKSPLLRAISDRCLVVAGLSGMGVALGMQLGKEA 363          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A2D8CFY6_9BACT (FAD-dependent oxidoreductase n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CFY6_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 3.570e-23
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEAVTKF 210
            RN+LI F+N+VL LP  W++E+EWSGIMGFT +KSP++KR+S+  +++AGLSGMGVAL M LGKEA  + 
Sbjct:  298 RNHLISFANDVLNLPEGWEVEKEWSGIMGFTNTKSPILKRVSDKTIVVAGLSGMGVALGMQLGKEAAERL 367          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A1B6YBK7_9BACT (DAO domain-containing protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6YBK7_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 6.550e-23
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEA 198
            + YL+ F+N+ LELP  WKIEQEWSGIMGFTESKS +++ I + C+L AGLSGMGVAL MNLGK+A
Sbjct:  298 KKYLVSFANDTLELPEGWKIEQEWSGIMGFTESKSYILEDIDKNCVLAAGLSGMGVALGMNLGKKA 363          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A6A8Q195_9BACT (FAD-binding oxidoreductase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q195_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 6.910e-22
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKE 195
            + +L++F+N++L LP  W+IEQEWSGIMGFTE+KSP++K+I    L++AGLSGMGVAL M LGKE
Sbjct:  298 KEHLMEFANDILSLPESWEIEQEWSGIMGFTETKSPVLKKIGSSSLIVAGLSGMGVALGMQLGKE 362          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A2D9FVM7_9BACT (FAD-dependent oxidoreductase n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FVM7_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 4.750e-21
Identity = 42/66 (63.64%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEA 198
            R++LI F++EVLELP+ W+IE+EWSGIMGFT +KSP++K++S   ++ AGLSGMGVAL M LG+EA
Sbjct:  296 RDHLIQFADEVLELPHNWEIEKEWSGIMGFTSTKSPILKKVSGKTVIAAGLSGMGVALGMQLGREA 361          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: UPI00037FE6E4 (FAD-binding oxidoreductase n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI00037FE6E4)

HSP 1 Score: 91.7 bits (226), Expect = 2.510e-20
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEA 198
            +N+L+ F+N VL LP  W+IE EWSGIMGFT +KSP++++IS+  +++AGLSGMGVAL M LG+EA
Sbjct:  298 KNHLLKFANGVLRLPKGWEIETEWSGIMGFTSTKSPILRKISDSTVVVAGLSGMGVALGMQLGREA 363          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: UPI000CD8548F (FAD-binding oxidoreductase n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD8548F)

HSP 1 Score: 90.9 bits (224), Expect = 4.830e-20
Identity = 39/70 (55.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEAVTKF 210
            +++L++F+N VL+LP  W+I++EWSGIMGFT +KSP++  +S   +L+AGLSGMGVAL M LGKEA ++ 
Sbjct:  298 KDHLLEFANNVLKLPKGWEIDREWSGIMGFTPTKSPIMNAVSTDVVLVAGLSGMGVALGMQLGKEAASEL 367          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A3M8G3Y0_9BACT (FAD-binding oxidoreductase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G3Y0_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 6.830e-20
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEAVTKF 210
            + Y+ DF+N +++ P  W+IE+EWSGIMGFTE+KSP+++ +S+ C++ AGLSGMGVA+ M LG+ A   F
Sbjct:  299 KEYMTDFTNNIIKPPKGWQIEREWSGIMGFTETKSPILEFVSDNCVIAAGLSGMGVAMGMKLGESAANIF 368          
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Match: A0A3D1GBV2_9BACT (FAD-dependent oxidoreductase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GBV2_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.780e-19
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAGLSGMGVALAMNLGKEAVT 204
            R+YLIDF+N V+ LP  W+I ++WSGIMGFT +KS  ++ IS+  LL++GLSGMGVAL M LGK AV+
Sbjct:  298 RSYLIDFANRVIGLPTGWEIGEQWSGIMGFTPTKSAFIEPISDKTLLVSGLSGMGVALGMQLGKNAVS 365          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122514.4636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A350PKN9_9BACT6.420e-2469.70FAD-dependent oxidoreductase n=4 Tax=Bacteroidetes... [more]
A0A521FK05_9BACT1.310e-2365.15Glycine/D-amino acid oxidase n=1 Tax=Gracilimonas ... [more]
A0A2D8CFY6_9BACT3.570e-2361.43FAD-dependent oxidoreductase n=2 Tax=Balneolaceae ... [more]
A0A1B6YBK7_9BACT6.550e-2368.18DAO domain-containing protein n=1 Tax=Balneola sp.... [more]
A0A6A8Q195_9BACT6.910e-2263.08FAD-binding oxidoreductase n=1 Tax=Balneolaceae ba... [more]
A0A2D9FVM7_9BACT4.750e-2163.64FAD-dependent oxidoreductase n=3 Tax=Balneolaceae ... [more]
UPI00037FE6E42.510e-2060.61FAD-binding oxidoreductase n=1 Tax=Gracilimonas tr... [more]
UPI000CD8548F4.830e-2055.71FAD-binding oxidoreductase n=1 Tax=Gracilimonas am... [more]
A0A3M8G3Y0_9BACT6.830e-2052.86FAD-binding oxidoreductase n=1 Tax=Balneola sp. Ta... [more]
A0A3D1GBV2_9BACT1.780e-1960.29FAD-dependent oxidoreductase n=1 Tax=Balneolaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122514contigM-pyrifera_M_contig122514:315..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score93.2
Seed ortholog evalue5.2e-17
Seed eggNOG ortholog1121930.AQXG01000018_gene761
Preferred namepuuB
KEGG rclassRC00062
KEGG koko:K09471
KEGG ReactionR07415
KEGG Pathwayko00330,ko01100,map00330,map01100
KEGG ModuleM00136
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD dependent oxidoreductase
EggNOG OGs1IPIG@117747,4NEEY@976,COG0665@1,COG0665@2
COG Functional cat.E
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.7313304-CDS-M-pyrifera_M_contig122514:314..5271622815744.7313304-CDS-M-pyrifera_M_contig122514:314..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122514 315..527 -
1692277549.13546-CDS-M-pyrifera_M_contig122514:314..5271692277549.13546-CDS-M-pyrifera_M_contig122514:314..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122514 315..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122514.4636.1prot_M-pyrifera_M_contig122514.4636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122514 315..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122514.4636.1

>prot_M-pyrifera_M_contig122514.4636.1 ID=prot_M-pyrifera_M_contig122514.4636.1|Name=mRNA_M-pyrifera_M_contig122514.4636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
RNYLIDFSNEVLELPNYWKIEQEWSGIMGFTESKSPMVKRISEGCLLIAG
LSGMGVALAMNLGKEAVTKF*
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mRNA from alignment at M-pyrifera_M_contig122514:315..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122514.4636.1 ID=mRNA_M-pyrifera_M_contig122514.4636.1|Name=mRNA_M-pyrifera_M_contig122514.4636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig122514:315..527- (Macrocystis pyrifera P11B4 male)
AGAAACTACTTAATTGATTTTTCGAATGAAGTACTTGAATTACCAAATTA TTGGAAGATTGAGCAAGAATGGTCAGGGATTATGGGATTTACTGAATCAA AATCACCTATGGTAAAACGAATTTCAGAAGGCTGTTTATTGATAGCAGGA TTAAGTGGAATGGGAGTTGCTTTAGCAATGAATCTTGGAAAAGAAGCGGT CACTAAGTTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122514:315..527-

>mRNA_M-pyrifera_M_contig122514.4636.1 ID=mRNA_M-pyrifera_M_contig122514.4636.1|Name=mRNA_M-pyrifera_M_contig122514.4636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig122514:315..527- (Macrocystis pyrifera P11B4 male)
AGAAACTACTTAATTGATTTTTCGAATGAAGTACTTGAATTACCAAATTA
TTGGAAGATTGAGCAAGAATGGTCAGGGATTATGGGATTTACTGAATCAA
AATCACCTATGGTAAAACGAATTTCAGAAGGCTGTTTATTGATAGCAGGA
TTAAGTGGAATGGGAGTTGCTTTAGCAATGAATCTTGGAAAAGAAGCGGT
CACTAAGTTTTAAAGAAACTACTTAATTGATTTTTCGAATGAAGTACTTG
AATTACCAAATTATTGGAAGATTGAGCAAGAATGGTCAGGGATTATGGGA
TTTACTGAATCAAAATCACCTATGGTAAAACGAATTTCAGAAGGCTGTTT
ATTGATAGCAGGATTAAGTGGAATGGGAGTTGCTTTAGCAATGAATCTTG
GAAAAGAAGCGGTCACTAAGTTTTAA
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