mRNA_M-pyrifera_M_contig12251.4634.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12251.4634.1
Unique NamemRNA_M-pyrifera_M_contig12251.4634.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12251.4634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12251contigM-pyrifera_M_contig12251:4179..5013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7G9I2
Preferred nameUFL1
KEGG koko:K14772
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006355,GO:0006464,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008284,GO:0009605,GO:0009889,GO:0009892,GO:0009894,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010605,GO:0010646,GO:0010720,GO:0010941,GO:0012505,GO:0014013,GO:0014015,GO:0016020,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0023051,GO:0030154,GO:0030162,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031667,GO:0031984,GO:0032088,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033143,GO:0033146,GO:0033554,GO:0034976,GO:0036211,GO:0042127,GO:0042175,GO:0042176,GO:0042221,GO:0042493,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043393,GO:0043412,GO:0043433,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051094,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051716,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0060548,GO:0061136,GO:0065007,GO:0065009,GO:0070647,GO:0071568,GO:0071569,GO:0071704,GO:0080090,GO:0097458,GO:0098827,GO:0120025,GO:0140096,GO:1901564,GO:1901698,GO:1901700,GO:1902065,GO:1903050,GO:1903320,GO:1903321,GO:1903362,GO:1903506,GO:1990564,GO:1990592,GO:2000026,GO:2000058,GO:2000112,GO:2001141
EggNOG free text desc.UFM1 transferase activity
EggNOG OGsKOG2235@1,KOG2235@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size407
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.5266206-CDS-M-pyrifera_M_contig12251:4178..43281622815744.5266206-CDS-M-pyrifera_M_contig12251:4178..4328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 4179..4328 -
1692277549.0015-CDS-M-pyrifera_M_contig12251:4178..43281692277549.0015-CDS-M-pyrifera_M_contig12251:4178..4328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 4179..4328 -
1622815744.538094-CDS-M-pyrifera_M_contig12251:4758..50131622815744.538094-CDS-M-pyrifera_M_contig12251:4758..5013Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 4759..5013 -
1692277549.0183573-CDS-M-pyrifera_M_contig12251:4758..50131692277549.0183573-CDS-M-pyrifera_M_contig12251:4758..5013Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12251 4759..5013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12251.4634.1prot_M-pyrifera_M_contig12251.4634.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12251 4179..5013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12251.4634.1

>prot_M-pyrifera_M_contig12251.4634.1 ID=prot_M-pyrifera_M_contig12251.4634.1|Name=mRNA_M-pyrifera_M_contig12251.4634.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
RFFLNRRYIVDSQLSLTPKVYGVSTRFVEDIVNRFREDATSTASSSALSS
TKPESELKVPRSNTSSRKGSGKSRRRNAGRKAENEVAEEEVRSFVCQCKP
ELQNHPLLVAALGGHLRVPFGEAKGEAMRRASEVS
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mRNA from alignment at M-pyrifera_M_contig12251:4179..5013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12251.4634.1 ID=mRNA_M-pyrifera_M_contig12251.4634.1|Name=mRNA_M-pyrifera_M_contig12251.4634.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=835bp|location=Sequence derived from alignment at M-pyrifera_M_contig12251:4179..5013- (Macrocystis pyrifera P11B4 male)
AGGTTCTTCCTGAACCGCCGTTACATTGTTGACTCTCAGCTCTCACTGAC
CCCGAAGGTATACGGTGTGAGTACGAGATTCGTGGAAGACATCGTGAATC
GTTTTCGCGAGGATGCGACATCCACGGCGAGTTCTTCGGCTCTCAGCAGT
ACAAAACCCGAAAGCGAGCTGAAAGTGCCTCGCAGCAATACCTCTTCGCG
AAAGGGCAGCGGAAAATCGCGAAGGAGAAATGCTGGTCGCAAGGCTGAGA
ACGAGGTGGGTACGACTGTAGGCAATGGGCTAAACACACAGAACACCGCG
TGCTTTGCTCTCGACACCCTAAATTGGCTACCTTGTTGTTCTTGTATCAG
AGATCAGCCCGCACGGGTTTTGTTGGCTACTCGAGTGCTCGGCGTTGAAA
GCATGTGCGACACCTCCGACCGACGTGGCGGGCTGTATACACCACTGCGC
GCTCGATGTCGTAATCAGCGTTTGGTCAAGTTGTGATCGAAGATGTTGGA
ATATACTTGAAGAGTGGCATTTCTGTCTTTTTGGACACGTGAAGGCATAT
TTTTCTGTTTTGGCCTCCCTCATTGTGTCCTTGTGCCGTTTTTAGTGAAG
GGGGGTGGCCAGTCAAACGGCCAAACCGCGGTCTACTATTGTAGTAGCTT
TGGTTCTCATGGAGATCGATGTTTGTATTGGCCAGGTGGCCGAGGAAGAG
GTGCGCTCTTTCGTTTGCCAGTGCAAGCCTGAGCTGCAAAATCACCCTCT
GCTTGTGGCGGCTCTGGGAGGTCATCTTCGAGTTCCCTTCGGCGAGGCTA
AAGGGGAGGCGATGCGACGAGCAAGCGAAGTGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12251:4179..5013-

>mRNA_M-pyrifera_M_contig12251.4634.1 ID=mRNA_M-pyrifera_M_contig12251.4634.1|Name=mRNA_M-pyrifera_M_contig12251.4634.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig12251:4179..5013- (Macrocystis pyrifera P11B4 male)
AGGTTCTTCCTGAACCGCCGTTACATTGTTGACTCTCAGCTCTCACTGAC
CCCGAAGGTATACGGTGTGAGTACGAGATTCGTGGAAGACATCGTGAATC
GTTTTCGCGAGGATGCGACATCCACGGCGAGTTCTTCGGCTCTCAGCAGT
ACAAAACCCGAAAGCGAGCTGAAAGTGCCTCGCAGCAATACCTCTTCGCG
AAAGGGCAGCGGAAAATCGCGAAGGAGAAATGCTGGTCGCAAGGCTGAGA
ACGAGAGGTTCTTCCTGAACCGCCGTTACATTGTTGACTCTCAGCTCTCA
CTGACCCCGAAGGTATACGGTGTGAGTACGAGATTCGTGGAAGACATCGT
GAATCGTTTTCGCGAGGATGCGACATCCACGGCGAGTTCTTCGGCTCTCA
GCAGTACAAAACCCGAAAGCGAGCTGAAAGTGCCTCGCAGCAATACCTCT
TCGCGAAAGGGCAGCGGAAAATCGCGAAGGAGAAATGCTGGTCGCAAGGC
TGAGAACGAGGTGGCCGAGGAAGAGGTGCGCTCTTTCGTTTGCCAGTGCA
AGCCTGAGCTGCAAAATCACCCTCTGCTTGTGGCGGCTCTGGGAGGTCAT
CTTCGAGTTCCCTTCGGCGAGGCTAAAGGGGAGGCGATGCGACGAGCAAG
CGAAGTGAGCGTGGCCGAGGAAGAGGTGCGCTCTTTCGTTTGCCAGTGCA
AGCCTGAGCTGCAAAATCACCCTCTGCTTGTGGCGGCTCTGGGAGGTCAT
CTTCGAGTTCCCTTCGGCGAGGCTAAAGGGGAGGCGATGCGACGAGCAAG
CGAAGTGAGC
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