mRNA_M-pyrifera_M_contig122509.4632.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122509.4632.1
Unique NamemRNA_M-pyrifera_M_contig122509.4632.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122509.4632.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.710e-19
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 LCHSLMNKAVHFKTHGKPFGVTSVVVPAGTKGFLYVEAMNEPAVRAALNGLRGV 162
            LC S+MNKA+ FK +G+PFGVTS VVPAGTKGFLY+EA NEPAV+AA+NGLRGV
Sbjct:   26 LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGV 79
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BLAST of mRNA_M-pyrifera_M_contig122509.4632.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.340e-19
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 LCHSLMNKAVHFKTHGKPFGVTSVVVPAGTKGFLYVEAMNEPAVRAALNGLRGV 162
            LC S+MNKA+ FK +G+PFGVTS VVPAGTKGFLY+EA NEPAV+AA+NGLRG+
Sbjct:  174 LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGI 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122509.4632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFI1_9PHAE1.710e-1977.78Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
D7FI29_ECTSI2.340e-1975.93Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122509contigM-pyrifera_M_contig122509:166..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7FI29
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Exons1
Model size225
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.4793818-UTR-M-pyrifera_M_contig122509:165..1801622815744.4793818-UTR-M-pyrifera_M_contig122509:165..180Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122509 166..180 +
1692277548.9729316-UTR-M-pyrifera_M_contig122509:165..1801692277548.9729316-UTR-M-pyrifera_M_contig122509:165..180Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122509 166..180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.4890375-CDS-M-pyrifera_M_contig122509:180..3901622815744.4890375-CDS-M-pyrifera_M_contig122509:180..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122509 181..390 +
1692277548.9840555-CDS-M-pyrifera_M_contig122509:180..3901692277548.9840555-CDS-M-pyrifera_M_contig122509:180..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122509 181..390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122509.4632.1prot_M-pyrifera_M_contig122509.4632.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122509 181..390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122509.4632.1

>prot_M-pyrifera_M_contig122509.4632.1 ID=prot_M-pyrifera_M_contig122509.4632.1|Name=mRNA_M-pyrifera_M_contig122509.4632.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MNKAVHFKTHGKPFGVTSVVVPAGTKGFLYVEAMNEPAVRAALNGLRGVS
FFFLSWLEVSYVKNRRFDT*
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mRNA from alignment at M-pyrifera_M_contig122509:166..390+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122509.4632.1 ID=mRNA_M-pyrifera_M_contig122509.4632.1|Name=mRNA_M-pyrifera_M_contig122509.4632.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig122509:166..390+ (Macrocystis pyrifera P11B4 male)
CTGTGCCACTCTCTCATGAACAAGGCGGTCCACTTCAAGACGCACGGCAA
GCCTTTCGGGGTGACCTCCGTGGTGGTACCGGCGGGAACAAAGGGTTTCC
TGTACGTGGAAGCCATGAACGAGCCCGCCGTCCGCGCCGCTCTCAACGGA
CTGAGAGGGGTGAGTTTTTTTTTCTTGTCTTGGCTCGAAGTATCGTATGT
TAAGAATCGTCGTTTTGACACGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122509:166..390+

>mRNA_M-pyrifera_M_contig122509.4632.1 ID=mRNA_M-pyrifera_M_contig122509.4632.1|Name=mRNA_M-pyrifera_M_contig122509.4632.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig122509:166..390+ (Macrocystis pyrifera P11B4 male)
ATGAACAAGGCGGTCCACTTCAAGACGCACGGCAAGCCTTTCGGGGTGAC
CTCCGTGGTGGTACCGGCGGGAACAAAGGGTTTCCTGTACGTGGAAGCCA
TGAACGAGCCCGCCGTCCGCGCCGCTCTCAACGGACTGAGAGGGGTGAGT
TTTTTTTTCTTGTCTTGGCTCGAAGTATCGTATGTTAAGAATCGTCGTTT
TGACACGTAGATGAACAAGGCGGTCCACTTCAAGACGCACGGCAAGCCTT
TCGGGGTGACCTCCGTGGTGGTACCGGCGGGAACAAAGGGTTTCCTGTAC
GTGGAAGCCATGAACGAGCCCGCCGTCCGCGCCGCTCTCAACGGACTGAG
AGGGGTGAGTTTTTTTTTCTTGTCTTGGCTCGAAGTATCGTATGTTAAGA
ATCGTCGTTTTGACACGTAG
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