mRNA_M-pyrifera_M_contig122454.4631.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122454.4631.1
Unique NamemRNA_M-pyrifera_M_contig122454.4631.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122454.4631.1 vs. uniprot
Match: A0A7C6BJB5_9BACT (Uncharacterized protein n=4 Tax=Atribacterota TaxID=67818 RepID=A0A7C6BJB5_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-9
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   58 LYESVDSATLEQIRSWIQAGADVNYRDGNNATPLMYAAAYSTDPEIIRELVQAGAQLEAVDD 243
             +E   +   E+I S I+ G DVN RD N  TPLMYAA Y+ +PE+++ L++AGA  + VDD
Sbjct:    3 FFEMCKTGHFEEILSKIREGIDVNTRDENGWTPLMYAAWYNQNPEVVKILLEAGADAKLVDD 64
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BLAST of mRNA_M-pyrifera_M_contig122454.4631.1 vs. uniprot
Match: A0A7D7ZDN9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A7D7ZDN9_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.130e-6
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   79 ATLEQIRSWIQAGADVNYRDGNNATPLMYAAAYSTDPEIIRELVQAGAQLEA 234
            AT+E +   I  G DVN RD    TPLM+AA YST+PE+I  LV+ GA + A
Sbjct:   14 ATVEDVEREINNGVDVNARDRMGRTPLMHAACYSTNPEVITTLVKNGADVHA 65
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BLAST of mRNA_M-pyrifera_M_contig122454.4631.1 vs. uniprot
Match: A0A6L8BDI1_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L8BDI1_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 6.340e-5
Identity = 24/55 (43.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   73 DSATLEQIRSWIQAGADVNYRD-GNNATPLMYAAAYSTDPEIIRELVQAGAQLEA 234
            ++A+++++R+ ++AGADV  RD  N+ TPL +AA++ T P +I  L+ AGA++EA
Sbjct:   44 ETASVQEVRACVEAGADVMARDLYNDETPLHWAASFHTQPAVIELLLDAGAEIEA 98
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BLAST of mRNA_M-pyrifera_M_contig122454.4631.1 vs. uniprot
Match: A0A7V6U7C5_9BACT (Ankryin n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V6U7C5_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 8.500e-5
Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   58 LYESVDSATLEQIRSWIQAGADVNYRDGNNATPLMYAAAYSTDPEIIRELVQ 213
             +E V + TLE++ + I+AGA+VN RD +  TPLMYAA  + +P++I+ L++
Sbjct:   27 FFELVKTGTLEEVNNAIKAGANVNARDEDGKTPLMYAARDNQNPDVIKVLLE 78
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BLAST of mRNA_M-pyrifera_M_contig122454.4631.1 vs. uniprot
Match: A0A6B1FQZ1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1FQZ1_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 8.860e-5
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   76 SATLEQIRSWIQAGADVNYRDGNNATPLMYAAAYSTDPEIIRELVQAGAQLEAVDDTEGFTA 261
            SAT    R+ +QAGADV  RD    TPL  AAA+S    ++  +V+AGA ++A+D+  G +A
Sbjct:   41 SATPGDARACLQAGADVMVRDSAGLTPLHLAAAWSAHRGVVEAVVEAGADIDAMDNYFGTSA 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122454.4631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7C6BJB5_9BACT3.420e-946.77Uncharacterized protein n=4 Tax=Atribacterota TaxI... [more]
A0A7D7ZDN9_9BACT1.130e-651.92Uncharacterized protein n=1 Tax=Candidatus Dadabac... [more]
A0A6L8BDI1_9PROT6.340e-543.64Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7V6U7C5_9BACT8.500e-544.23Ankryin n=1 Tax=bacterium TaxID=1869227 RepID=A0A7... [more]
A0A6B1FQZ1_9GAMM8.860e-543.55Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122454contigM-pyrifera_M_contig122454:172..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.4449804-CDS-M-pyrifera_M_contig122454:171..5251622815744.4449804-CDS-M-pyrifera_M_contig122454:171..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122454 172..525 +
1692277548.9631245-CDS-M-pyrifera_M_contig122454:171..5251692277548.9631245-CDS-M-pyrifera_M_contig122454:171..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122454 172..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122454.4631.1prot_M-pyrifera_M_contig122454.4631.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122454 172..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122454.4631.1

>prot_M-pyrifera_M_contig122454.4631.1 ID=prot_M-pyrifera_M_contig122454.4631.1|Name=mRNA_M-pyrifera_M_contig122454.4631.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
AAAEPSESSQAENQDPTLALYESVDSATLEQIRSWIQAGADVNYRDGNNA
TPLMYAAAYSTDPEIIRELVQAGAQLEAVDDTEGFTALLYGAKISKTPAV
ISVLVELGADVNARSPDG
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mRNA from alignment at M-pyrifera_M_contig122454:172..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122454.4631.1 ID=mRNA_M-pyrifera_M_contig122454.4631.1|Name=mRNA_M-pyrifera_M_contig122454.4631.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig122454:172..525+ (Macrocystis pyrifera P11B4 male)
GCCGCCGCGGAACCCAGCGAGAGCAGCCAAGCAGAGAATCAGGATCCCAC
GCTCGCGCTCTACGAGTCTGTCGACAGCGCCACGCTTGAGCAAATCCGCT
CTTGGATCCAAGCGGGCGCTGATGTGAACTATCGCGATGGGAATAACGCA
ACTCCGCTGATGTATGCAGCCGCGTACAGCACGGATCCTGAGATTATCCG
CGAGCTTGTCCAAGCGGGCGCACAGCTCGAAGCCGTCGACGATACAGAGG
GATTCACTGCGTTGTTGTACGGCGCGAAAATCAGCAAGACACCCGCGGTT
ATTTCTGTGCTTGTCGAACTCGGCGCTGATGTCAATGCTCGATCCCCCGA
TGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122454:172..525+

>mRNA_M-pyrifera_M_contig122454.4631.1 ID=mRNA_M-pyrifera_M_contig122454.4631.1|Name=mRNA_M-pyrifera_M_contig122454.4631.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig122454:172..525+ (Macrocystis pyrifera P11B4 male)
GCCGCCGCGGAACCCAGCGAGAGCAGCCAAGCAGAGAATCAGGATCCCAC
GCTCGCGCTCTACGAGTCTGTCGACAGCGCCACGCTTGAGCAAATCCGCT
CTTGGATCCAAGCGGGCGCTGATGTGAACTATCGCGATGGGAATAACGCA
ACTCCGCTGATGTATGCAGCCGCGTACAGCACGGATCCTGAGATTATCCG
CGAGCTTGTCCAAGCGGGCGCACAGCTCGAAGCCGTCGACGATACAGAGG
GATTCACTGCGTTGTTGTACGGCGCGAAAATCAGCAAGACACCCGCGGTT
ATTTCTGTGCTTGTCGAACTCGGCGCTGATGTCAATGCTCGATCCCCCGA
TGGCGCCGCCGCGGAACCCAGCGAGAGCAGCCAAGCAGAGAATCAGGATC
CCACGCTCGCGCTCTACGAGTCTGTCGACAGCGCCACGCTTGAGCAAATC
CGCTCTTGGATCCAAGCGGGCGCTGATGTGAACTATCGCGATGGGAATAA
CGCAACTCCGCTGATGTATGCAGCCGCGTACAGCACGGATCCTGAGATTA
TCCGCGAGCTTGTCCAAGCGGGCGCACAGCTCGAAGCCGTCGACGATACA
GAGGGATTCACTGCGTTGTTGTACGGCGCGAAAATCAGCAAGACACCCGC
GGTTATTTCTGTGCTTGTCGAACTCGGCGCTGATGTCAATGCTCGATCCC
CCGATGGC
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