mRNA_M-pyrifera_M_contig122435.4628.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122435.4628.1
Unique NamemRNA_M-pyrifera_M_contig122435.4628.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122435.4628.1 vs. uniprot
Match: A0A2A4RED2_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RED2_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 1.560e-11
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 ISFMVEMPDWFSDATTIPLLNAQADGILLTPSPSSLALLAFGGLTATRRRR 153
            ISF+++MP+WF          +Q DGILLTP+P S++LLA GGL ATRRRR
Sbjct:  173 ISFLIQMPEWFDTTNGFDNRTSQGDGILLTPTPGSVSLLALGGLAATRRRR 223
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122435.4628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2A4RED2_9BACT1.560e-1156.86Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122435contigM-pyrifera_M_contig122435:369..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.28435-CDS-M-pyrifera_M_contig122435:368..5181622815744.28435-CDS-M-pyrifera_M_contig122435:368..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122435 369..518 -
1692277548.877854-CDS-M-pyrifera_M_contig122435:368..5181692277548.877854-CDS-M-pyrifera_M_contig122435:368..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122435 369..518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.3007054-UTR-M-pyrifera_M_contig122435:518..5271622815744.3007054-UTR-M-pyrifera_M_contig122435:518..527Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122435 519..527 -
1692277548.8946376-UTR-M-pyrifera_M_contig122435:518..5271692277548.8946376-UTR-M-pyrifera_M_contig122435:518..527Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122435 519..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122435.4628.1prot_M-pyrifera_M_contig122435.4628.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122435 369..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122435.4628.1

>prot_M-pyrifera_M_contig122435.4628.1 ID=prot_M-pyrifera_M_contig122435.4628.1|Name=mRNA_M-pyrifera_M_contig122435.4628.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MVEMPDWFSDATTIPLLNAQADGILLTPSPSSLALLAFGGLTATRRRRG*
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mRNA from alignment at M-pyrifera_M_contig122435:369..527-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122435.4628.1 ID=mRNA_M-pyrifera_M_contig122435.4628.1|Name=mRNA_M-pyrifera_M_contig122435.4628.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig122435:369..527- (Macrocystis pyrifera P11B4 male)
ATCAGCTTCATGGTCGAGATGCCCGATTGGTTCTCTGACGCGACGACGAT
CCCGCTGCTCAACGCGCAAGCGGACGGCATCCTGCTCACACCTTCTCCCA
GCAGTCTGGCGCTACTCGCGTTTGGTGGATTGACTGCAACACGCCGTCGG
CGTGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122435:369..527-

>mRNA_M-pyrifera_M_contig122435.4628.1 ID=mRNA_M-pyrifera_M_contig122435.4628.1|Name=mRNA_M-pyrifera_M_contig122435.4628.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig122435:369..527- (Macrocystis pyrifera P11B4 male)
ATGGTCGAGATGCCCGATTGGTTCTCTGACGCGACGACGATCCCGCTGCT
CAACGCGCAAGCGGACGGCATCCTGCTCACACCTTCTCCCAGCAGTCTGG
CGCTACTCGCGTTTGGTGGATTGACTGCAACACGCCGTCGGCGTGGATGA
ATGGTCGAGATGCCCGATTGGTTCTCTGACGCGACGACGATCCCGCTGCT
CAACGCGCAAGCGGACGGCATCCTGCTCACACCTTCTCCCAGCAGTCTGG
CGCTACTCGCGTTTGGTGGATTGACTGCAACACGCCGTCGGCGTGGATGA
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