mRNA_M-pyrifera_M_contig122433.4627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122433.4627.1
Unique NamemRNA_M-pyrifera_M_contig122433.4627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: M4B7Z9_HYAAE (AA_permease domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7Z9_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 1.340e-24
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   73 NVGVGSLISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVPHQLGF-LNHAEAPWVAVLLNS 492
            N+     +ST+LWNY G+D +G +AGEV+  GRT+P  +++ +I IT  Y +PV     +  +   W EG    +A SIAP+LGVWV +    + L     ++A +SR LW  A+ K +P  L F     E P  AV+  +
Sbjct:   35 NIDWSVFLSTILWNYQGWDSLGCVAGEVKEGGRTYPIAITIAMILITVNYAVPVGAGIMVQPDSSQWHEGSLETIAMSIAPWLGVWVGMAAVVATLGEFNVVMACSSRALWATADYKMLPSFLVFECERFETPVAAVIFQT 175          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A7C3NUW9_9DELT (APC family permease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3NUW9_9DELT)

HSP 1 Score: 103 bits (257), Expect = 8.970e-23
Identity = 64/181 (35.36%), Postives = 100/181 (55.25%), Query Frame = 1
Query:    1 FIIQIPMGAERIWEGREGILSTRSNVGVGSLISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSI-APFLGVWVAVG--VCASQLANGIAMLAGASRMLWQMAELKWVPHQLGFLNHA--EAPWVAVLLNSFPVLGLCLLDFD 528
            F   +  GA +I   R   L  +  +G   L+STLLWN SG+D  G  A EV+ P R++PR +++ +I +T +Y +P+AV   +D +   W+EG F ++A    AP+LGVW+ +G  + A+ L N  A+L  ++R+ + MA    +P  L    HA  + P  A+LLNS  +  L    F 
Sbjct:  173 FAALVMWGAPQIEPARW--LEQKDTIGWPLLLSTLLWNTSGWDNAGCCAAEVDQPSRSYPRAMTLTVILVTAVYLLPIAVVTGLDPDSAQWREGDFPKIAAKAGAPWLGVWLTLGGLISAAGLLN--ALLCTSARVPYAMARRGLLPRPLA-ARHARFDTPSKAILLNSLGIAALIPFSFQ 348          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: K3WW37_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW37_GLOUD)

HSP 1 Score: 102 bits (254), Expect = 3.790e-22
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   61 STRSNVGVGSLISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVP 432
            S   N+     +ST+LWNY G+D +G +AGEV+  GRT+P  + + ++ IT  Y  PVA    ++ ++  W EG+   +A +IAP+LGVWV      + L     ++A +SR LW  A+ K +P
Sbjct:  279 SVAPNINWSLFLSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIVIAMVLITINYAFPVAAGIMVESDFTVWHEGMLETIAMTIAPWLGVWVGAAAVVATLGEFNVVMACSSRALWATADYKMLP 402          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: W2H0C5_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H0C5_PHYPR)

HSP 1 Score: 99.8 bits (247), Expect = 2.380e-21
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   94 ISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVPHQLGF-LNHAEAPWVAVLLNSFPVLGLCLLDFD 528
            +ST+LWNY G+D +G +AGEV+  GRT+P  + + +I IT  Y  PV     +  ++  W EG    +A +IAP+LGVWV +    + L     ++A +SR LW  A+ K +P  L         P  AV+  +     L    F+
Sbjct:  261 LSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIVIAMILITINYAFPVGAGIMVQSDFSQWHEGSLETIAMTIAPWLGVWVGMAAVVATLGEFNVVMACSSRALWATADYKMLPSCLAIEWKRFGTPIAAVIFQTMTTGVLMNFSFE 406          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A3R7KFT6_9STRA (Endo-1,3(4)-beta-glucanase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFT6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.970e-21
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   61 STRSNVGVGSLISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVPHQLGF 447
            S   N+     +ST+LWNY G+D +G +AGEV+  GRT+P  + + ++ IT  Y  PV     +  ++  W EG    +A +I P+LGVWV      + L     ++A +SR LW  A+ K +P  L +
Sbjct:  252 SVAPNIDWSLFLSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIVIAMVLITINYAFPVGAGIMVQPDFSQWHEGSLETIAMTITPWLGVWVGAAAVVATLGEFNVVMACSSRALWATADYKMLPSFLSY 380          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A5D6XI90_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI90_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.170e-20
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   94 ISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVPHQLGF-LNHAEAPWVAVLLNSFPVLGLCLLDFD 528
            +ST+LWNY G+D +G +AGEV+  GRT+P  + + +  IT  Y  PVA    +  ++  W EG    +A +IAP+LGVWV      + L     ++A +SR LW  A+ K +P  L         P  A+L  +     L    F+
Sbjct:  276 LSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIVIAMTLITVNYAFPVAAGIMVQPDFTTWHEGSLESIAMTIAPWLGVWVGAAAVVATLGEFNVVMACSSRALWATADYKMLPSCLAVEWKRFGTPIAAILFQTVTTALLMSFSFE 421          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A662X4E2_9STRA (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4E2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.470e-20
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   94 ISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVP 432
            +ST+LWNY G+D +G +AGEV+  GRT+P  + + ++ IT  Y  PV     +  ++  W EG    +A +IAP+LGVWV      + L     ++A +SR LW  A+ K +P
Sbjct:  257 LSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIMIAMVLITINYAFPVGAGIMVQSDFSTWHEGSLETIAMNIAPWLGVWVGAAAVVATLGEFNVVMACSSRALWATADYKMLP 369          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A662Y7G6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7G6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-20
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   94 ISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVP 432
            +ST+LWNY G+D +G +AGEV+  GRT+P  + + ++ IT  Y  PV     +  ++  W EG    +A +IAP+LG+WV      + L     ++A +SR LW  A+ K +P
Sbjct:  265 LSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIMIAMVLITINYAFPVGAGIMVQSDFSTWHEGSLETIAMTIAPWLGIWVGAAAVVATLGEFNVVMACSSRALWATADYKMLP 377          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A484EE55_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EE55_BRELC)

HSP 1 Score: 97.1 bits (240), Expect = 2.780e-20
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   94 ISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVPHQLGF-LNHAEAPWVAVLLNSFPVLGLCLLDFD 528
            +ST+LWNY G+D +G +AGEV+  GRT+P  + + +  IT  Y  PV     +  ++  W EG    +A ++AP+LGVWV +    + L     ++A +SR LW  A+ K +P  L +       P  AV + +     L    F+
Sbjct:  261 LSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIVIAMGLITINYAFPVGAGIMVQSDYSQWHEGSLETIAMTVAPYLGVWVGMAAVVATLGEFNVVMACSSRALWATADYKMLPAFLTYEWRRFGTPVAAVAIQTLTTGVLMNFSFE 406          
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Match: A0A0P1B0M2_PLAHL (Amino acid permease family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0M2_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 2.870e-20
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   94 ISTLLWNYSGFDRIGTLAGEVEHPGRTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPFLGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVP 432
            +ST+LWNY G+D +G +AGEV+  GRT+P  + + ++ IT  Y +PV     ++ ++  W EG    +A  I P+LG WV V    + L     ++A +SR LW  A+ K +P
Sbjct:  272 LSTILWNYQGWDSLGCVAGEVKDGGRTYPIAIVIAMVLITINYALPVGAGIMVESDFSQWHEGSLETIAIMITPWLGAWVGVAAIVATLGEFNVVMACSSRALWATADYKMLP 384          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122433.4627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M4B7Z9_HYAAE1.340e-2436.88AA_permease domain-containing protein n=1 Tax=Hyal... [more]
A0A7C3NUW9_9DELT8.970e-2335.36APC family permease n=1 Tax=Deltaproteobacteria ba... [more]
K3WW37_GLOUD3.790e-2237.10Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2H0C5_PHYPR2.380e-2134.25Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A3R7KFT6_9STRA7.970e-2134.88Endo-1,3(4)-beta-glucanase n=3 Tax=Phytophthora ke... [more]
A0A5D6XI90_9STRA1.170e-2034.25Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662X4E2_9STRA1.470e-2038.05Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Noth... [more]
A0A662Y7G6_9STRA1.500e-2037.17Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A484EE55_BRELC2.780e-2032.88Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1B0M2_PLAHL2.870e-2037.17Amino acid permease family protein n=1 Tax=Plasmop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122433contigM-pyrifera_M_contig122433:1..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue6.4e-21
Seed eggNOG ortholog272952.HpaP802401
Hectar predicted targeting categoryother localisation
EggNOG free text desc.L-alpha-amino acid transmembrane transport
EggNOG OGs3QE7Q@4776,COG0531@1,KOG1287@2759
COG Functional cat.E
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size528
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.2442174-CDS-M-pyrifera_M_contig122433:0..5101622815744.2442174-CDS-M-pyrifera_M_contig122433:0..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122433 1..510 -
1692277548.8462265-CDS-M-pyrifera_M_contig122433:0..5101692277548.8462265-CDS-M-pyrifera_M_contig122433:0..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122433 1..510 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.2548838-UTR-M-pyrifera_M_contig122433:510..5281622815744.2548838-UTR-M-pyrifera_M_contig122433:510..528Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122433 511..528 -
1692277548.8608189-UTR-M-pyrifera_M_contig122433:510..5281692277548.8608189-UTR-M-pyrifera_M_contig122433:510..528Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122433 511..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122433.4627.1prot_M-pyrifera_M_contig122433.4627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122433 1..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122433.4627.1

>prot_M-pyrifera_M_contig122433.4627.1 ID=prot_M-pyrifera_M_contig122433.4627.1|Name=mRNA_M-pyrifera_M_contig122433.4627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MGAERIWEGREGILSTRSNVGVGSLISTLLWNYSGFDRIGTLAGEVEHPG
RTFPRGVSVGLIGITFMYTIPVAVAASIDHNWQDWKEGLFARVAGSIAPF
LGVWVAVGVCASQLANGIAMLAGASRMLWQMAELKWVPHQLGFLNHAEAP
WVAVLLNSFPVLGLCLLDFD
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mRNA from alignment at M-pyrifera_M_contig122433:1..528-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122433.4627.1 ID=mRNA_M-pyrifera_M_contig122433.4627.1|Name=mRNA_M-pyrifera_M_contig122433.4627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig122433:1..528- (Macrocystis pyrifera P11B4 male)
TTCATCATTCAAATCCCTATGGGCGCGGAGCGCATCTGGGAAGGCCGAGA AGGCATTTTGTCAACCAGAAGCAATGTAGGAGTTGGAAGTTTGATCTCCA CGCTCTTGTGGAATTACTCGGGTTTCGATCGAATTGGAACGTTGGCTGGT GAAGTCGAACACCCGGGCCGTACCTTCCCTAGAGGGGTATCGGTGGGTCT GATAGGAATCACGTTTATGTACACAATCCCAGTGGCAGTCGCTGCTTCAA TCGATCACAATTGGCAAGATTGGAAAGAAGGATTGTTTGCAAGAGTTGCA GGTTCCATTGCCCCATTCCTCGGAGTCTGGGTAGCTGTTGGAGTGTGTGC ATCCCAGCTCGCAAATGGTATTGCAATGCTAGCAGGGGCTTCTCGCATGC TGTGGCAGATGGCTGAGCTCAAGTGGGTGCCACATCAACTTGGTTTCCTC AACCATGCAGAAGCACCATGGGTTGCAGTGTTGCTCAACTCCTTCCCAGT GCTGGGACTGTGTCTTCTCGATTTTGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122433:1..528-

>mRNA_M-pyrifera_M_contig122433.4627.1 ID=mRNA_M-pyrifera_M_contig122433.4627.1|Name=mRNA_M-pyrifera_M_contig122433.4627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig122433:1..528- (Macrocystis pyrifera P11B4 male)
ATGGGCGCGGAGCGCATCTGGGAAGGCCGAGAAGGCATTTTGTCAACCAG
AAGCAATGTAGGAGTTGGAAGTTTGATCTCCACGCTCTTGTGGAATTACT
CGGGTTTCGATCGAATTGGAACGTTGGCTGGTGAAGTCGAACACCCGGGC
CGTACCTTCCCTAGAGGGGTATCGGTGGGTCTGATAGGAATCACGTTTAT
GTACACAATCCCAGTGGCAGTCGCTGCTTCAATCGATCACAATTGGCAAG
ATTGGAAAGAAGGATTGTTTGCAAGAGTTGCAGGTTCCATTGCCCCATTC
CTCGGAGTCTGGGTAGCTGTTGGAGTGTGTGCATCCCAGCTCGCAAATGG
TATTGCAATGCTAGCAGGGGCTTCTCGCATGCTGTGGCAGATGGCTGAGC
TCAAGTGGGTGCCACATCAACTTGGTTTCCTCAACCATGCAGAAGCACCA
TGGGTTGCAGTGTTGCTCAACTCCTTCCCAGTGCTGGGACTGTGTCTTCT
CGATTTTGACATGGGCGCGGAGCGCATCTGGGAAGGCCGAGAAGGCATTT
TGTCAACCAGAAGCAATGTAGGAGTTGGAAGTTTGATCTCCACGCTCTTG
TGGAATTACTCGGGTTTCGATCGAATTGGAACGTTGGCTGGTGAAGTCGA
ACACCCGGGCCGTACCTTCCCTAGAGGGGTATCGGTGGGTCTGATAGGAA
TCACGTTTATGTACACAATCCCAGTGGCAGTCGCTGCTTCAATCGATCAC
AATTGGCAAGATTGGAAAGAAGGATTGTTTGCAAGAGTTGCAGGTTCCAT
TGCCCCATTCCTCGGAGTCTGGGTAGCTGTTGGAGTGTGTGCATCCCAGC
TCGCAAATGGTATTGCAATGCTAGCAGGGGCTTCTCGCATGCTGTGGCAG
ATGGCTGAGCTCAAGTGGGTGCCACATCAACTTGGTTTCCTCAACCATGC
AGAAGCACCATGGGTTGCAGTGTTGCTCAACTCCTTCCCAGTGCTGGGAC
TGTGTCTTCTCGATTTTGAC
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