mRNA_M-pyrifera_M_contig12242.4624.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12242.4624.1
Unique NamemRNA_M-pyrifera_M_contig12242.4624.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12242.4624.1 vs. uniprot
Match: D7G6V1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V1_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.480e-18
Identity = 32/47 (68.09%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 MWNREQCQAAITKVLEWDFDTVYATHGTCPIKHAKDAIRDEFQFLWD 141
            +WNRE+C++A+++VL+WDFD VYA HG CPI+ AK+AIR EFQFLWD
Sbjct:  254 LWNREKCKSAMSRVLDWDFDKVYANHGECPIQDAKEAIRGEFQFLWD 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12242.4624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V1_ECTSI2.480e-1868.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12242contigM-pyrifera_M_contig12242:6754..6897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein of unknown function DUF4336
Ec32 orthologEc-01_012140.1
Exons1
Model size144
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.1412907-CDS-M-pyrifera_M_contig12242:6753..68971622815744.1412907-CDS-M-pyrifera_M_contig12242:6753..6897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12242 6754..6897 -
1692277548.8085322-CDS-M-pyrifera_M_contig12242:6753..68971692277548.8085322-CDS-M-pyrifera_M_contig12242:6753..6897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12242 6754..6897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12242.4624.1prot_M-pyrifera_M_contig12242.4624.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12242 6754..6897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12242.4624.1

>prot_M-pyrifera_M_contig12242.4624.1 ID=prot_M-pyrifera_M_contig12242.4624.1|Name=mRNA_M-pyrifera_M_contig12242.4624.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MWNREQCQAAITKVLEWDFDTVYATHGTCPIKHAKDAIRDEFQFLWD*
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mRNA from alignment at M-pyrifera_M_contig12242:6754..6897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12242.4624.1 ID=mRNA_M-pyrifera_M_contig12242.4624.1|Name=mRNA_M-pyrifera_M_contig12242.4624.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig12242:6754..6897- (Macrocystis pyrifera P11B4 male)
ATGTGGAATCGCGAGCAGTGCCAAGCCGCCATAACGAAGGTCTTGGAATG
GGACTTCGACACCGTCTATGCGACACACGGGACCTGCCCCATAAAGCACG
CGAAGGACGCCATTCGCGACGAGTTCCAGTTTTTGTGGGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12242:6754..6897-

>mRNA_M-pyrifera_M_contig12242.4624.1 ID=mRNA_M-pyrifera_M_contig12242.4624.1|Name=mRNA_M-pyrifera_M_contig12242.4624.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig12242:6754..6897- (Macrocystis pyrifera P11B4 male)
ATGTGGAATCGCGAGCAGTGCCAAGCCGCCATAACGAAGGTCTTGGAATG
GGACTTCGACACCGTCTATGCGACACACGGGACCTGCCCCATAAAGCACG
CGAAGGACGCCATTCGCGACGAGTTCCAGTTTTTGTGGGACTGAATGTGG
AATCGCGAGCAGTGCCAAGCCGCCATAACGAAGGTCTTGGAATGGGACTT
CGACACCGTCTATGCGACACACGGGACCTGCCCCATAAAGCACGCGAAGG
ACGCCATTCGCGACGAGTTCCAGTTTTTGTGGGACTGA
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