mRNA_M-pyrifera_M_contig122417.4622.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122417.4622.1
Unique NamemRNA_M-pyrifera_M_contig122417.4622.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A5A8CPU7_CAFRO (Protein YIPF n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CPU7_CAFRO)

HSP 1 Score: 146 bits (369), Expect = 1.550e-40
Identity = 82/158 (51.90%), Postives = 109/158 (68.99%), Query Frame = 1
Query:    1 IGRRMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            I ++++A+++P S    E +++ D+ G IL+CL LG  LLL G+V FG IYGFGLVGC+ +  + NL+S  T  GI   +V SVFGY LLPIT LAAL ++  L   LG V+A   VAW+ + AT F++AAL    +R L+AYPT LLYAVFALLAVF
Sbjct:  131 IKQKLVAIVDPRSRVNMEAVQDGDLFGPILICLALGTTLLLRGQVHFGSIYGFGLVGCLGMYLVLNLMS--TGRGIDAASVFSVFGYGLLPITVLAALSVVLPLSGALGVVVAPVCVAWSAWCATRFYEAALAMPEQRALIAYPTVLLYAVFALLAVF 286          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 1.400e-37
Identity = 75/158 (47.47%), Postives = 100/158 (63.29%), Query Frame = 1
Query:    1 IGRRMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            I ++ LAV+ P+   K+E++ ++DMAG +  CL LGF LLLTGKV FGYIYGFGL+GC+ +  I NL+S      I I    S+ GYCLLPI +LAA  I+F L   +G       + W T  AT F +A L  + +R L+AYP  LLY+ FAL+ VF
Sbjct:   25 IWQKTLAVLVPVKELKQEIMVDADMAGPLFFCLLLGFCLLLTGKVHFGYIYGFGLIGCLGMYIILNLMS---DRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A0C9S173_AMBAM (Putative golgi membrane protein (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9S173_AMBAM)

HSP 1 Score: 134 bits (338), Expect = 3.340e-37
Identity = 74/158 (46.84%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 IGRRMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            I ++ LAV+NP+      +L+E+D+AG ++ CL  G  LLLTGKV FGYIYG G++GC+A+ ++ NL+S   + GIS+   VSV GYCLLP+  L+ L ILF L   LG  +ALA V W   +A+  F  AL    ++ L+ YP  L+Y VFALL +F
Sbjct:   19 ILQKTLAVLNPMKDPDAAILQETDLAGPLVFCLAFGGFLLLTGKVHFGYIYGIGVLGCLAMYSLLNLMS---ASGISVGCTVSVLGYCLLPMVLLSGLSILFSLKGSLGTAVALAVVVWCALSASKLFVTALSMVHQQPLVLYPCALVYGVFALLTIF 173          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: B7QHK6_IXOSC (Golgi membrane protein sb140, putative n=4 Tax=Ixodes TaxID=6944 RepID=B7QHK6_IXOSC)

HSP 1 Score: 137 bits (345), Expect = 3.350e-37
Identity = 77/155 (49.68%), Postives = 100/155 (64.52%), Query Frame = 1
Query:   10 RMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            + +AV+NP+      +L+ESDMAG ++ CL  G  LLLTGKV FGYIYG GL+GC+A+ ++ NL+S   + GIS    VSV GYCLLP+  L+ L ILF L   LG  LALA V W   +A+  F  AL    ++ LL YP  L+Y VFALL +F
Sbjct:  111 KTVAVLNPIKDPDAAILKESDMAGPLVFCLAFGGFLLLTGKVHFGYIYGIGLLGCLAMYSLLNLMS---ANGISAGCTVSVLGYCLLPMVLLSGLSILFSLKGSLGTALALAVVLWCALSASKLFVTALSMDHQQPLLLYPCSLVYGVFALLTIF 262          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A812NM95_9DINO (Protein YIPF n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NM95_9DINO)

HSP 1 Score: 137 bits (345), Expect = 3.610e-37
Identity = 80/173 (46.24%), Postives = 105/173 (60.69%), Query Frame = 1
Query:    1 IGRRMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLL-----------TGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPG----ISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            I  + L V+NP+    E  +++SD+AG ++ CL LGF LL            TGKV FGYIY FGL+GC AL T+ NL+S          I    V+SVFGYCLLPI  +A L +   +   LG++L L AV W+TY+A  FF+A  H +  R LLAYP+FLL+A FAL+ VF
Sbjct:   93 IKEKTLEVLNPMRPINESFMQDSDLAGPLVFCLVLGFCLLFVRAAAAQRARPTGKVHFGYIYSFGLLGCGALWTVLNLMSSTAHDSDHIPIGFTRVLSVFGYCLLPIILIAVLTVFVTMTGILGSILTLGAVGWSTYSAVRFFEATTHMREHRWLLAYPSFLLFACFALITVF 265          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A226EG30_FOLCA (Protein YIPF5 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EG30_FOLCA)

HSP 1 Score: 135 bits (339), Expect = 3.830e-36
Identity = 69/152 (45.39%), Postives = 106/152 (69.74%), Query Frame = 1
Query:   19 AVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            +V+NPL      +L+++D+AG ++ C+  GF+LLL+GKVQFGYIYG G++GC+++  + N++S   + G+S+  VVSV GYCLLP+  LA + +LF L   +G+VL   A+ W + +A+  F  AL+   ++ L+AYP  L+Y VFALLAVF
Sbjct:  129 SVLNPLRKTDATILQDTDLAGPVVFCVLFGFILLLSGKVQFGYIYGIGVIGCLSMYFLLNMMS---TAGVSLGIVVSVLGYCLLPMVGLAGVNLLFSLQGIVGSVLTFCAILWCSMSASKLFVTALNMNQQQPLVAYPCALVYGVFALLAVF 277          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: UPI000BA80CDC (protein YIPF5-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA80CDC)

HSP 1 Score: 135 bits (339), Expect = 4.120e-36
Identity = 72/158 (45.57%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 IGRRMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            I ++ LAV+NP+   +  +L+E+D+AG ++ C+  G  LLLTGKV FGYIYG G++GC+A+  + N++S     GIS+   VSV GYCLLP+  L+ + I+F L   LG V+A+  V W   +A+  F  AL    ++ L+AYP  LLY VFALL VF
Sbjct:  126 IMQKTLAVLNPIKEPEASILQETDLAGPLVFCMAFGVFLLLTGKVHFGYIYGIGVLGCLAMYALLNMMS---MSGISVGCTVSVLGYCLLPMVMLSGVSIIFSLKGTLGTVIAILVVLWCALSASKLFATALVMDHQQPLVAYPCALLYGVFALLTVF 280          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A7R9A4E5_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A4E5_9CRUS)

HSP 1 Score: 132 bits (333), Expect = 5.410e-36
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1
Query:   16 LAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            LAV+NP+   K E+L+++D+AG +  CL LG  LLL GKV FGYIYG G+VGC+ +  + N++S     G+SI   VSV GYCLLP+  ++ L ++F L   +G V  L +V W +++A+  F  AL    ++ L+AYP  LLY VFALL+VF
Sbjct:   61 LAVLNPMKQTKPEILQDTDLAGPLAFCLALGAFLLLNGKVHFGYIYGIGVVGCLGMYFLLNMMS---MDGVSIGVTVSVLGYCLLPMVGVSGLAVIFTLKGGIGLVATLLSVFWCSWSASKLFVTALAMDHQQPLVAYPCALLYGVFALLSVF 210          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A1D2NC38_ORCCI (Protein YIPF5 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NC38_ORCCI)

HSP 1 Score: 134 bits (337), Expect = 6.130e-36
Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 1
Query:   19 AVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            +V+NPL      +L+++D+AG I+ C+  GF+LLL+GKVQFGYIYG GL+GC+ +  + N++S     G+S+  +VSV GYCLLP+  LA + +L  L   +G VL   AV W + +A+  F  AL  + ++TL+AYP  L+Y VFALLAVF
Sbjct:  120 SVLNPLRTTDAAILQDTDLAGPIVFCVMFGFILLLSGKVQFGYIYGIGLIGCVGMYFLLNMMSVS---GVSLGVIVSVLGYCLLPMVGLAGVNLLLSLQGIIGTVLTALAVLWCSLSASKLFVTALAMQHQQTLVAYPCALVYGVFALLAVF 268          
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Match: A0A023FUW6_AMBPA (Putative rab gtpase n=11 Tax=Ixodidae TaxID=6939 RepID=A0A023FUW6_AMBPA)

HSP 1 Score: 133 bits (335), Expect = 1.030e-35
Identity = 73/158 (46.20%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 IGRRMLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFGLVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFELHSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFALLAVF 474
            I ++ +AV+NP+      +L+E+D+AG ++ CL  G  LLLTGKV FGYIYG G++GC+A+ ++ NL+S   + GIS+   VSV GYCLLP+  L+ L ILF L   LG  +ALA V W   +A+  F  AL    ++ L+ YP  L+Y VFALL +F
Sbjct:  107 ILQKTVAVLNPMKDPDAAILQETDLAGPLVFCLAFGGFLLLTGKVHFGYIYGIGVLGCLAMYSLLNLMS---ASGISVGCTVSVLGYCLLPMVLLSGLSILFSLKGSLGTAVALAVVVWCALSASKLFVTALSMVHQQPLVLYPCALVYGVFALLTIF 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122417.4622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CPU7_CAFRO1.550e-4051.90Protein YIPF n=2 Tax=Cafeteria roenbergensis TaxID... [more]
A0A7S0DM30_9EUKA1.400e-3747.47Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]
A0A0C9S173_AMBAM3.340e-3746.84Putative golgi membrane protein (Fragment) n=1 Tax... [more]
B7QHK6_IXOSC3.350e-3749.68Golgi membrane protein sb140, putative n=4 Tax=Ixo... [more]
A0A812NM95_9DINO3.610e-3746.24Protein YIPF n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A226EG30_FOLCA3.830e-3645.39Protein YIPF5 n=1 Tax=Folsomia candida TaxID=15844... [more]
UPI000BA80CDC4.120e-3645.57protein YIPF5-like n=1 Tax=Limulus polyphemus TaxI... [more]
A0A7R9A4E5_9CRUS5.410e-3646.41Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A1D2NC38_ORCCI6.130e-3646.71Protein YIPF5 n=1 Tax=Orchesella cincta TaxID=4870... [more]
A0A023FUW6_AMBPA1.030e-3546.20Putative rab gtpase n=11 Tax=Ixodidae TaxID=6939 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122417contigM-pyrifera_M_contig122417:12..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score132.5
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog9612.ENSCAFP00000002676
Preferred nameYIPF7
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Yip1 domain family member 7
EggNOG OGs38BJ4@33154,3BMXX@33208,3CTAS@33213,3EKKT@33554,3JF2T@40674,480J5@7711,492QZ@7742,COG5080@1,KOG3103@2759
COG Functional cat.U
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size465
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.0622108-UTR-M-pyrifera_M_contig122417:11..231622815744.0622108-UTR-M-pyrifera_M_contig122417:11..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122417 12..23 +
1692277548.7613652-UTR-M-pyrifera_M_contig122417:11..231692277548.7613652-UTR-M-pyrifera_M_contig122417:11..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122417 12..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.0754082-CDS-M-pyrifera_M_contig122417:23..4881622815744.0754082-CDS-M-pyrifera_M_contig122417:23..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122417 24..488 +
1692277548.7749898-CDS-M-pyrifera_M_contig122417:23..4881692277548.7749898-CDS-M-pyrifera_M_contig122417:23..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122417 24..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122417.4622.1prot_M-pyrifera_M_contig122417.4622.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122417 24..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122417.4622.1

>prot_M-pyrifera_M_contig122417.4622.1 ID=prot_M-pyrifera_M_contig122417.4622.1|Name=mRNA_M-pyrifera_M_contig122417.4622.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MLAVMNPLSHEKEEVLRESDMAGAILVCLGLGFVLLLTGKVQFGYIYGFG
LVGCIALTTIFNLLSPPTSPGISIETVVSVFGYCLLPITALAALGILFEL
HSPLGAVLALAAVAWATYTATHFFDAALHAKGKRTLLAYPTFLLYAVFAL
LAVF*
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mRNA from alignment at M-pyrifera_M_contig122417:12..488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122417.4622.1 ID=mRNA_M-pyrifera_M_contig122417.4622.1|Name=mRNA_M-pyrifera_M_contig122417.4622.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig122417:12..488+ (Macrocystis pyrifera P11B4 male)
ATCGGCAGGCGAATGCTGGCGGTGATGAACCCGCTGAGCCACGAGAAGGA GGAGGTGTTGCGGGAGAGTGACATGGCCGGGGCTATCTTGGTGTGTCTCG GTTTGGGCTTTGTGCTGTTGCTCACTGGGAAAGTGCAGTTTGGCTACATT TACGGCTTTGGACTCGTGGGTTGCATCGCTCTGACCACCATCTTCAACCT CCTCTCCCCGCCAACCTCCCCAGGCATCTCCATCGAAACCGTAGTGTCCG TCTTCGGCTACTGTCTCCTCCCCATCACCGCGCTGGCAGCCCTGGGTATC CTCTTCGAACTCCACTCCCCACTTGGAGCAGTGCTGGCACTCGCAGCTGT TGCATGGGCCACTTACACCGCCACCCACTTCTTCGACGCCGCCCTCCACG CAAAGGGCAAGAGAACCCTACTCGCATACCCAACCTTCCTCCTCTACGCT GTCTTCGCACTCCTCGCTGTCTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122417:12..488+

>mRNA_M-pyrifera_M_contig122417.4622.1 ID=mRNA_M-pyrifera_M_contig122417.4622.1|Name=mRNA_M-pyrifera_M_contig122417.4622.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig122417:12..488+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCGGTGATGAACCCGCTGAGCCACGAGAAGGAGGAGGTGTTGCG
GGAGAGTGACATGGCCGGGGCTATCTTGGTGTGTCTCGGTTTGGGCTTTG
TGCTGTTGCTCACTGGGAAAGTGCAGTTTGGCTACATTTACGGCTTTGGA
CTCGTGGGTTGCATCGCTCTGACCACCATCTTCAACCTCCTCTCCCCGCC
AACCTCCCCAGGCATCTCCATCGAAACCGTAGTGTCCGTCTTCGGCTACT
GTCTCCTCCCCATCACCGCGCTGGCAGCCCTGGGTATCCTCTTCGAACTC
CACTCCCCACTTGGAGCAGTGCTGGCACTCGCAGCTGTTGCATGGGCCAC
TTACACCGCCACCCACTTCTTCGACGCCGCCCTCCACGCAAAGGGCAAGA
GAACCCTACTCGCATACCCAACCTTCCTCCTCTACGCTGTCTTCGCACTC
CTCGCTGTCTTCTAGATGCTGGCGGTGATGAACCCGCTGAGCCACGAGAA
GGAGGAGGTGTTGCGGGAGAGTGACATGGCCGGGGCTATCTTGGTGTGTC
TCGGTTTGGGCTTTGTGCTGTTGCTCACTGGGAAAGTGCAGTTTGGCTAC
ATTTACGGCTTTGGACTCGTGGGTTGCATCGCTCTGACCACCATCTTCAA
CCTCCTCTCCCCGCCAACCTCCCCAGGCATCTCCATCGAAACCGTAGTGT
CCGTCTTCGGCTACTGTCTCCTCCCCATCACCGCGCTGGCAGCCCTGGGT
ATCCTCTTCGAACTCCACTCCCCACTTGGAGCAGTGCTGGCACTCGCAGC
TGTTGCATGGGCCACTTACACCGCCACCCACTTCTTCGACGCCGCCCTCC
ACGCAAAGGGCAAGAGAACCCTACTCGCATACCCAACCTTCCTCCTCTAC
GCTGTCTTCGCACTCCTCGCTGTCTTCTAG
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