mRNA_M-pyrifera_M_contig122408.4621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122408.4621.1
Unique NamemRNA_M-pyrifera_M_contig122408.4621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122408.4621.1 vs. uniprot
Match: A0A520XMU5_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XMU5_9ACTN)

HSP 1 Score: 151 bits (382), Expect = 7.970e-45
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:    1 DLTDEQRRLAAAGDLNVLALLMLVGSALFALANWWIGTMNWLAVALSISSTLAWSLGLWRRSPITTSFVKIGFGVSGLVAPVVGLAGVVAGIAGFGWGWALLGAAFVYFAFSVLGLEIIERAHAAGVVDSY 393
            +L+DEQRR AA GDLNVLA+L  V S  FAL + WIG + W+AV  ++SS LA +LGL RR+ +  +FV++GFG+SGL AP+V +AG+V G+ G  WGWA+LG A +YF  SVLGLEIIERA  AGV+  Y
Sbjct:    4 ELSDEQRREAAEGDLNVLAVLTFVSSTAFALVSGWIGLIGWIAVVATVSSALATTLGLLRRNDVIVAFVQVGFGISGLAAPIVAIAGLVLGLVGITWGWAVLGGAVIYFGLSVLGLEIIERAETAGVITKY 134
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BLAST of mRNA_M-pyrifera_M_contig122408.4621.1 vs. uniprot
Match: A0A351EUF6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EUF6_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 2.740e-41
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:    1 DLTDEQRRLAAAGDLNVLALLMLVGSALFALANWWIGTMNWLAVALSISSTLAWSLGLWRRSPITTSFVKIGFGVSGLVAPVVGLAGVVAGIAG-FGWGWALLGAAFVYFAFSVLGLEIIERAHAAGVVDSY 393
            +LT ++ R AA GDL+VLA+LMLVGS  FA  N W+GTM W+A AL++SSTL W+ GL RRS    +FVKIGFG SGL AP V + GV+  + G + WGWA++  A VYF FS+LGLEIIERA   G ++ +
Sbjct:    4 ELTQDELRDAAGGDLSVLAVLMLVGSVSFAALNMWVGTMGWIAAALAVSSTLLWTTGLLRRSATIAAFVKIGFGFSGLAAPAVAIVGVLLALVGDYRWGWAVVAGAVVYFFFSLLGLEIIERAQETGAIERF 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122408.4621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A520XMU5_9ACTN7.970e-4558.02Uncharacterized protein n=2 Tax=Acidimicrobiales b... [more]
A0A351EUF6_9ACTN2.740e-4156.06Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122408contigM-pyrifera_M_contig122408:121..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.0303152-CDS-M-pyrifera_M_contig122408:120..5161622815744.0303152-CDS-M-pyrifera_M_contig122408:120..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122408 121..516 +
1692277548.7497458-CDS-M-pyrifera_M_contig122408:120..5161692277548.7497458-CDS-M-pyrifera_M_contig122408:120..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122408 121..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122408.4621.1prot_M-pyrifera_M_contig122408.4621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122408 121..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122408.4621.1

>prot_M-pyrifera_M_contig122408.4621.1 ID=prot_M-pyrifera_M_contig122408.4621.1|Name=mRNA_M-pyrifera_M_contig122408.4621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
DLTDEQRRLAAAGDLNVLALLMLVGSALFALANWWIGTMNWLAVALSISS
TLAWSLGLWRRSPITTSFVKIGFGVSGLVAPVVGLAGVVAGIAGFGWGWA
LLGAAFVYFAFSVLGLEIIERAHAAGVVDSY*
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mRNA from alignment at M-pyrifera_M_contig122408:121..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122408.4621.1 ID=mRNA_M-pyrifera_M_contig122408.4621.1|Name=mRNA_M-pyrifera_M_contig122408.4621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig122408:121..516+ (Macrocystis pyrifera P11B4 male)
GACCTCACCGACGAACAGCGACGCCTCGCGGCAGCGGGCGACCTGAATGT
CCTCGCCCTGCTGATGCTGGTCGGCAGCGCGCTCTTCGCGCTCGCCAACT
GGTGGATCGGCACGATGAACTGGCTCGCCGTCGCCTTGTCGATCTCGTCG
ACGCTGGCGTGGTCGCTCGGGCTCTGGCGTCGTTCGCCGATCACCACCTC
GTTCGTCAAGATCGGATTCGGCGTGAGCGGCCTCGTCGCCCCGGTCGTGG
GTCTTGCCGGCGTCGTGGCCGGCATCGCCGGCTTCGGCTGGGGTTGGGCG
TTGCTCGGTGCCGCGTTCGTCTACTTCGCGTTCTCGGTGCTCGGGTTGGA
GATCATCGAACGAGCCCACGCCGCGGGCGTCGTCGACTCCTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122408:121..516+

>mRNA_M-pyrifera_M_contig122408.4621.1 ID=mRNA_M-pyrifera_M_contig122408.4621.1|Name=mRNA_M-pyrifera_M_contig122408.4621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig122408:121..516+ (Macrocystis pyrifera P11B4 male)
GACCTCACCGACGAACAGCGACGCCTCGCGGCAGCGGGCGACCTGAATGT
CCTCGCCCTGCTGATGCTGGTCGGCAGCGCGCTCTTCGCGCTCGCCAACT
GGTGGATCGGCACGATGAACTGGCTCGCCGTCGCCTTGTCGATCTCGTCG
ACGCTGGCGTGGTCGCTCGGGCTCTGGCGTCGTTCGCCGATCACCACCTC
GTTCGTCAAGATCGGATTCGGCGTGAGCGGCCTCGTCGCCCCGGTCGTGG
GTCTTGCCGGCGTCGTGGCCGGCATCGCCGGCTTCGGCTGGGGTTGGGCG
TTGCTCGGTGCCGCGTTCGTCTACTTCGCGTTCTCGGTGCTCGGGTTGGA
GATCATCGAACGAGCCCACGCCGCGGGCGTCGTCGACTCCTACTGAGACC
TCACCGACGAACAGCGACGCCTCGCGGCAGCGGGCGACCTGAATGTCCTC
GCCCTGCTGATGCTGGTCGGCAGCGCGCTCTTCGCGCTCGCCAACTGGTG
GATCGGCACGATGAACTGGCTCGCCGTCGCCTTGTCGATCTCGTCGACGC
TGGCGTGGTCGCTCGGGCTCTGGCGTCGTTCGCCGATCACCACCTCGTTC
GTCAAGATCGGATTCGGCGTGAGCGGCCTCGTCGCCCCGGTCGTGGGTCT
TGCCGGCGTCGTGGCCGGCATCGCCGGCTTCGGCTGGGGTTGGGCGTTGC
TCGGTGCCGCGTTCGTCTACTTCGCGTTCTCGGTGCTCGGGTTGGAGATC
ATCGAACGAGCCCACGCCGCGGGCGTCGTCGACTCCTACTGA
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