mRNA_M-pyrifera_M_contig1224.4619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1224.4619.1
Unique NamemRNA_M-pyrifera_M_contig1224.4619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1224.4619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1224contigM-pyrifera_M_contig1224:14513..19603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1059
Cds size1059
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1224.4619.1prot_M-pyrifera_M_contig1224.4619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1224 14513..19603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.8886027-CDS-M-pyrifera_M_contig1224:14512..146531622815743.8886027-CDS-M-pyrifera_M_contig1224:14512..14653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 14513..14653 +
1692277548.6771762-CDS-M-pyrifera_M_contig1224:14512..146531692277548.6771762-CDS-M-pyrifera_M_contig1224:14512..14653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 14513..14653 +
1622815743.9035454-CDS-M-pyrifera_M_contig1224:15801..159751622815743.9035454-CDS-M-pyrifera_M_contig1224:15801..15975Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 15802..15975 +
1692277548.6882868-CDS-M-pyrifera_M_contig1224:15801..159751692277548.6882868-CDS-M-pyrifera_M_contig1224:15801..15975Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 15802..15975 +
1622815743.9201403-CDS-M-pyrifera_M_contig1224:18038..181571622815743.9201403-CDS-M-pyrifera_M_contig1224:18038..18157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 18039..18157 +
1692277548.7090786-CDS-M-pyrifera_M_contig1224:18038..181571692277548.7090786-CDS-M-pyrifera_M_contig1224:18038..18157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 18039..18157 +
1622815743.9391525-CDS-M-pyrifera_M_contig1224:18978..196031622815743.9391525-CDS-M-pyrifera_M_contig1224:18978..19603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 18979..19603 +
1692277548.7180257-CDS-M-pyrifera_M_contig1224:18978..196031692277548.7180257-CDS-M-pyrifera_M_contig1224:18978..19603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1224 18979..19603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1224.4619.1

>prot_M-pyrifera_M_contig1224.4619.1 ID=prot_M-pyrifera_M_contig1224.4619.1|Name=mRNA_M-pyrifera_M_contig1224.4619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=353bp
PEPAEVTRSLSALRSSILFAREKCTEGWSLCNGLVESLEEALCVLEPAVP
QASDRARSTLPLSALARIQGNVEGLHSWELAGKEGERGYQETDGPAYLVT
RPDIQEAKLSYVEAVDAVTQAERLYRFHSKEELAVPVHYMTQTRMGILQQ
ELWCEGQSWSFFSHCSSAEGHTQRQDHPCQACDLQTIVQLCLARAFCFCT
TSGAHSLDSLNASVSGMTTKKGDFSRSDFAHAQIAVLKRVHPRGQVGLAA
DVRRKLHLPELSESAAKRVRMREESYTHSKRGEKAARAPTRAATGEDLKR
RRQSGVKKGKAAVQEAIELNHRAALAASLAPAGRRKVGERGEPDNYGLAV
GLP
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mRNA from alignment at M-pyrifera_M_contig1224:14513..19603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1224.4619.1 ID=mRNA_M-pyrifera_M_contig1224.4619.1|Name=mRNA_M-pyrifera_M_contig1224.4619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5091bp|location=Sequence derived from alignment at M-pyrifera_M_contig1224:14513..19603+ (Macrocystis pyrifera P11B4 male)
CCGGAGCCGGCAGAGGTGACCCGATCCCTGTCGGCTCTGCGGAGTTCGAT
CCTCTTCGCCCGAGAGAAGTGCACGGAAGGGTGGAGCTTGTGCAACGGGC
TGGTGGAATCTCTCGAGGAGGCATTGTGTGTGCTTGAACCGGTGGGTGCT
GTCGCATCACGCTGCTTGCAATACGCTCGTGCACATACCCAAGCGTGCAC
TTCTCCGGTGCTTCTTGGCTGGCAGAGTAGCGTTCTTTGCCCGTGACGAG
AGGCGGTGTTGAGCTCTACCTGTGGCGTGCCTCACGACCCACGAACATGG
TCACGATCGTGATTTTGCATGGGGCGTCGGTTGATGGATATCGAACACCT
GTTTCCCGATGTGCGCCCTTCTTTTCATTTATTACTAGTAGAGCTGAAGG
TACGTTTTGGGAGCTAGTTAGTGGTATCGCAGTAAAAGTGCGCTTCTATA
TAAGCCCTTCCGGGACACATGTATGTCGACCAAATGGATTGTAGTAAAAC
GACCAACACAGCGACGGGTGCGATATTGCTAAGCATCTATTCACCCCTCT
GGGACTTCAATGATAGCGGCTAAGACAATGCCCCCTTTTTGGCCATATAC
ATCGACAGTCTAGGAGCACCGCGAGAGCCATCAGTATCTACGGGTAGGGT
CATGTTGCGACCCGTGCCGTACGCGACTCCGTTCAACCATTGTCAGGAGG
ACACTTATTTATTTGTATCGTCCCCCAATCACGCAGTGGCCGTCGCTGAA
ATTGCCATTTTTTCGTCATCCAACTTTCCCCTCTCAAGTCCAGTACGGTT
GTGACCATGCTGCCTGCGCGCGTCTTGTTGAGCTCCTCACTTTCCATTTC
GGACACGTGCCCTATATTCTGGTGCCCTATATTTTGCGTCCGGGCTGCGT
CATGTGGCAGGCGCTGAAGTCCCAAATTAATTTCGTATTTTCATGAACGA
CACCGATCGGCGCCGCTTCACAACTCGTGAGCAGTTTTCCGGATTGACTT
GGTGCTGCCGAGGGCACAATGACAATGCTATCGTAACGCCTGCACTGTGG
ACCACTATGGGAACAGATCACCAAATACCATCTGTCCAACCATCGTACCA
TAATACCTTTCTTTTCTTCTGTGTCGACAGTTTTCGATCTGTCCAACAGG
TCTTCATCCTCCTTTTATTTTTGGCTTTCCTCCTGCGGATGGCGTAATCT
CGGCTAAAGCTCATCAATCTTCCGCACCTATTATACATAACTGTAGTCTG
TGTCCAATGTGTGTTCTTTGTTTTGCATAATCTTGCCAGGCGGTGCCCCA
GGCATCAGACCGCGCCAGATCAACCCTGCCGCTGAGCGCACTGGCGCGTA
TCCAGGGAAACGTGGAAGGGCTTCACAGCTGGGAGTTAGCGGGCAAAGAG
GGCGAGAGGGGATACCAGGAAACGGACGGACCGGCCTACTTGGTGACAAG
ACCAGACATACAGGTGGGTCGTCGCAAGCGAGCACTCGCGGAGAGACGCA
TTCCCCAAATGTGTTGTGTGCGTGTGTGCTTTCTTGTGTTTTTCTTGGCA
TTACGGCTCCGATTCTCCGCCTGGGGAACATTTTTTAAGGCAGTAATACA
TTTTCGGGATGTTTTCCTTTGGGGAGATTCGTTTGATTTTATTTTTAGAG
TCCGTTTTGAGTTTTTCACGTAGACGATGCCACTGTGTTTGGGAATGTAA
GGACCCTTTCGGTATTATTGTGGGTACAAACAATGTCTTTTACTTTTCCG
GACAGGGTGGTACTGCTGCTTGCCTCTCTGTTCAAAAATGTAAGGATGGT
TGAGGCATTATTATGAGTATCAAAACGCATCTTAAATTCTGAGCAGGGTG
GCCTTTTCGCTGTGTGCAATCTCAAGGAAAACACGTCCTGCCTACTGCAA
GTACGGGGTTTGCTCGCTGCCGGAGGTTGGACACCAGGGCTCGAATCCAC
GTAGACGAATGCCGGTGGTATTGCAGTCTGGTGCTGGTGTTGCTGTGGTC
TTGCTACGCGCATGCTCTACAGTAGGTAGATTATGGTACGTGTACGGACG
CAGCAGCCTGCGCCAGTCCTGACTTTCGACCCTCTGGAAGGGACACAGCG
CACGCTCCCAGAAACACAACAGCGCATACCTGGCGCATACTACAGGGGGG
ACACATCGCCCCACCGGGGGGGGTGTTTATCCTCCTCCTGCGGCGGCGAG
AGTTTGAGTGTCCGAACTGCAACAACATTCTTTCTCTGCTTTGCACGCGT
AACCTCTTCTGGTCTCGGCACGCATCTCGGCGAGGCAACGGCGCGACCTC
ATACCAATCACCATCGCCCGTCCTTATAAAATCCTCACAAATCTCGTTTT
TTGGTGGTCTTGATGTACCTGGTACTGCTTTGAAAGCTTCTCATTGGTCG
GTCGTTCCAAAAAGTTTCTTACGTATAGGTCCTGTGTCGGCTCTACAACG
TTTTCCTTGCCGGACGCGTCGGGTGTTCCATTTGTCTGATCGTCTTCTTA
TTTAGGGGGGGGATGTATGTACATCATTCATTGGCAAGGTTGGTTCAGGT
ATGGGGGTGGGGACGGGGTCTGGGAGGTTCCACAGGGCGCTTTTGTTGAC
TACGTATATATAGCGTTGTCGTTGCCAAGCGCGTCGAGCGTTCCACTTGC
GCGGTGGATTTTTTTGTTGTGAGGGGGGGGGGTACAGCGTCCATTGATAG
GGTTGGATTATGTATGGTGACGAGGGGCGGGGTCTGGGAGGTTCCACTAG
GTTCGCCCCAGATTTCTTAATCGGCTTCACTTTTCCCATCAGACTATCAA
TAGAACGTTAGAACGGCACCGGCATTTTGGTGACTAAATATTATCTTGAC
ACTAGAGTGGACTTATTATTGCAGCAAAAACAAGAGTCGACCCTCATGGT
AGTGCAGTGTTCATTTACATAAATCTGACTCTAATTCCAATTATTTTGTC
CTCCCAACGGGAGTGCAGTCCTAGACGGGTTAACATAAACATAAGGCACG
CCTTACTCTCGCTAAGAACTCGCGCTGGTGGAGGTTTTGGAACTGTCGTT
AACCGTGTGCACTATTGATCGTGGACTTGTTGAACGGCATTTGAAAAAAA
CAAAATCGGAGATGATCGGTCGGGACGGCGCCGATCTCCAGCGTCACAAG
TTTCATACCTCGTACCACGCTGAACCGTTTATACATTAACACGAAGACAA
GGCGGTCCTTACAATTCGGTCCAGAGTAGTAGGGTTTCCAACTTGATCCA
GCTACAAAGGATCGCCTACCCTTTCGGGCGTGAAAAATATCCCGCTTCTC
ATTCGCTCGTAAGTGTCTAATAACAGTACGCGGACAAGGTAATACTATTG
TGGCACTTTTTCTAGGGCTATTCAAGGGGTGACTTCATTATTTGCTCACG
TTTTTGAGGAGACGACCTGGAAGAAAGAAATAAACCCTCAGCGTAGCCCC
GGGCCTTGCGTGGCAAGCGACTTATAGCCTTCTTGGTCTTCACCTTTGGT
CGGTATGTTGTGACGATATTTTGCAGGAGGCCAAGCTGAGCTATGTGGAA
GCGGTGGATGCCGTGACGCAGGCGGAGCGGCTCTACCGCTTTCACAGCAA
GGAAGAGCTTGCGGTCCCCGTGCACTACATGACCCAGACGCGCATGTGAG
ACAGCTTCATGGTTTATTTTGGTTATGTTGTGCCATTTCGTTGGGCTACA
TCATCATCCAAACTCGAATGCGAGACATGAGTATTTCGGTTTGGTTGGAG
TATTTCGGTTTGGTTGATTTTATTTGCCTGAAATGTGTCCGTGGATGATG
CAGTAGTTTGGTTCATTGTTTGCGTCTTGTTTGTTGTTTATTCGGCGACA
CACATTCGCCGGCACCGTAAACTATAGACTCCCAAGGTGTTTTACGTTGA
TGTTCTTTCAAATAAAATAAAAAATGCCAAGCCTGAAGCATGGTCAATTT
TGTACGCACGTACGAGTATTAATAGCTACTTCCGCCAAAGGTAGTCGGTC
GCCATGTGTTTTATCTCGACGTCTGTTGATGGGGCGTGTGTTCGGGAGCC
AAGGCTGAAGCTAGGGCAGGAATTGAATTACTCCTCTATGCCACTGATGG
TAAAAGCGCAACTGTCGTGAGGATTCGGCTACACAATGGACTACGCGTTA
GGCTTAAAGCACGTCACATCTCTGTCCCTATCTCGGGAACGCCCCTTGCT
CGTGTACCCGAACTTGCACAGCGATTCTAACCTCATCAGTCAATCACGCA
ACTTCAACTTTGCCTTTTAAAATCGATCCGTCTCCGCCGCCCCCTCCTCA
AGTCAGTGAAAACCCGACGTGCTCCGTCCCGGCATTGTAGGGATGCGAGG
GTCTATGGTCATACGACTATGGCCACGGAGATGAGTATACCCCACCCCCA
CCACCAAGGCTTCGTTACTGTTTTACCGCACTTCAACCCCGCCGTTTTTC
CGACACGCGCCTGCAGGGGCATCCTGCAGCAAGAGCTCTGGTGCGAGGGA
CAGAGCTGGTCTTTCTTCTCCCACTGCTCGTCGGCGGAAGGGCACACGCA
GAGGCAGGACCACCCTTGCCAGGCCTGCGACCTGCAGACCATCGTGCAGC
TGTGCTTGGCGCGAGCTTTTTGCTTCTGCACCACATCGGGGGCGCATTCG
CTCGACAGCCTTAACGCAAGCGTCAGCGGCATGACCACAAAAAAGGGCGA
CTTTTCCCGAAGCGACTTCGCTCACGCGCAGATAGCGGTGCTCAAGCGCG
TCCACCCTAGGGGGCAGGTAGGCCTGGCCGCGGATGTTCGCCGCAAGCTG
CACCTCCCCGAGCTGTCCGAGTCCGCCGCGAAGAGGGTGCGCATGCGGGA
GGAGAGTTACACCCACTCCAAGAGGGGGGAGAAGGCGGCCCGGGCCCCTA
CTCGCGCCGCAACCGGGGAGGACTTGAAACGGCGTCGCCAATCAGGCGTC
AAGAAAGGGAAAGCGGCGGTCCAAGAAGCGATCGAACTCAACCACAGGGC
TGCCTTGGCGGCTAGCCTCGCACCTGCTGGACGGAGGAAGGTGGGCGAAA
GAGGTGAGCCCGACAACTACGGGCTTGCGGTGGGGTTGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1224:14513..19603+

>mRNA_M-pyrifera_M_contig1224.4619.1 ID=mRNA_M-pyrifera_M_contig1224.4619.1|Name=mRNA_M-pyrifera_M_contig1224.4619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2118bp|location=Sequence derived from alignment at M-pyrifera_M_contig1224:14513..19603+ (Macrocystis pyrifera P11B4 male)
CCGGAGCCGGCAGAGGTGACCCGATCCCTGTCGGCTCTGCGGAGTTCGAT
CCTCTTCGCCCGAGAGAAGTGCACGGAAGGGTGGAGCTTGTGCAACGGGC
TGGTGGAATCTCTCGAGGAGGCATTGTGTGTGCTTGAACCGCCGGAGCCG
GCAGAGGTGACCCGATCCCTGTCGGCTCTGCGGAGTTCGATCCTCTTCGC
CCGAGAGAAGTGCACGGAAGGGTGGAGCTTGTGCAACGGGCTGGTGGAAT
CTCTCGAGGAGGCATTGTGTGTGCTTGAACCGGCGGTGCCCCAGGCATCA
GACCGCGCCAGATCAACCCTGCCGCTGAGCGCACTGGCGCGTATCCAGGG
AAACGTGGAAGGGCTTCACAGCTGGGAGTTAGCGGGCAAAGAGGGCGAGA
GGGGATACCAGGAAACGGACGGACCGGCCTACTTGGTGACAAGACCAGAC
ATACAGGCGGTGCCCCAGGCATCAGACCGCGCCAGATCAACCCTGCCGCT
GAGCGCACTGGCGCGTATCCAGGGAAACGTGGAAGGGCTTCACAGCTGGG
AGTTAGCGGGCAAAGAGGGCGAGAGGGGATACCAGGAAACGGACGGACCG
GCCTACTTGGTGACAAGACCAGACATACAGGAGGCCAAGCTGAGCTATGT
GGAAGCGGTGGATGCCGTGACGCAGGCGGAGCGGCTCTACCGCTTTCACA
GCAAGGAAGAGCTTGCGGTCCCCGTGCACTACATGACCCAGACGCGCATG
AGGCCAAGCTGAGCTATGTGGAAGCGGTGGATGCCGTGACGCAGGCGGAG
CGGCTCTACCGCTTTCACAGCAAGGAAGAGCTTGCGGTCCCCGTGCACTA
CATGACCCAGACGCGCATGGGCATCCTGCAGCAAGAGCTCTGGTGCGAGG
GACAGAGCTGGTCTTTCTTCTCCCACTGCTCGTCGGCGGAAGGGCACACG
CAGAGGCAGGACCACCCTTGCCAGGCCTGCGACCTGCAGACCATCGTGCA
GCTGTGCTTGGCGCGAGCTTTTTGCTTCTGCACCACATCGGGGGCGCATT
CGCTCGACAGCCTTAACGCAAGCGTCAGCGGCATGACCACAAAAAAGGGC
GACTTTTCCCGAAGCGACTTCGCTCACGCGCAGATAGCGGTGCTCAAGCG
CGTCCACCCTAGGGGGCAGGTAGGCCTGGCCGCGGATGTTCGCCGCAAGC
TGCACCTCCCCGAGCTGTCCGAGTCCGCCGCGAAGAGGGTGCGCATGCGG
GAGGAGAGTTACACCCACTCCAAGAGGGGGGAGAAGGCGGCCCGGGCCCC
TACTCGCGCCGCAACCGGGGAGGACTTGAAACGGCGTCGCCAATCAGGCG
TCAAGAAAGGGAAAGCGGCGGTCCAAGAAGCGATCGAACTCAACCACAGG
GCTGCCTTGGCGGCTAGCCTCGCACCTGCTGGACGGAGGAAGGTGGGCGA
AAGAGGTGAGCCCGACAACTACGGGCTTGCGGTGGGGTTGCCGGGGCATC
CTGCAGCAAGAGCTCTGGTGCGAGGGACAGAGCTGGTCTTTCTTCTCCCA
CTGCTCGTCGGCGGAAGGGCACACGCAGAGGCAGGACCACCCTTGCCAGG
CCTGCGACCTGCAGACCATCGTGCAGCTGTGCTTGGCGCGAGCTTTTTGC
TTCTGCACCACATCGGGGGCGCATTCGCTCGACAGCCTTAACGCAAGCGT
CAGCGGCATGACCACAAAAAAGGGCGACTTTTCCCGAAGCGACTTCGCTC
ACGCGCAGATAGCGGTGCTCAAGCGCGTCCACCCTAGGGGGCAGGTAGGC
CTGGCCGCGGATGTTCGCCGCAAGCTGCACCTCCCCGAGCTGTCCGAGTC
CGCCGCGAAGAGGGTGCGCATGCGGGAGGAGAGTTACACCCACTCCAAGA
GGGGGGAGAAGGCGGCCCGGGCCCCTACTCGCGCCGCAACCGGGGAGGAC
TTGAAACGGCGTCGCCAATCAGGCGTCAAGAAAGGGAAAGCGGCGGTCCA
AGAAGCGATCGAACTCAACCACAGGGCTGCCTTGGCGGCTAGCCTCGCAC
CTGCTGGACGGAGGAAGGTGGGCGAAAGAGGTGAGCCCGACAACTACGGG
CTTGCGGTGGGGTTGCCG
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