mRNA_M-pyrifera_M_contig122386.4616.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122386.4616.1
Unique NamemRNA_M-pyrifera_M_contig122386.4616.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122386.4616.1 vs. uniprot
Match: A0A482RN90_9ARCH (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN90_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 2.580e-15
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   31 KVMHAEVHCLQQLPDIATAKGASVLVVELAADGVSYEEAVPCPMCSKGLVKTGVKIAYYSAIHGIDSISLSHKP 252
            +VMHAEVH L QLP    A+G    +VEL A+G+ YEEA+PCPMC   L + GV  A+YS+  GI ++ +S++P
Sbjct:  268 RVMHAEVHALIQLPTEQHARGTECYIVELDAEGIGYEEAIPCPMCQTALCQLGVAKAHYSSHSGIITVPVSYRP 341
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BLAST of mRNA_M-pyrifera_M_contig122386.4616.1 vs. uniprot
Match: A0A7S1NG78_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NG78_9EUGL)

HSP 1 Score: 69.7 bits (169), Expect = 4.600e-13
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   25 RSKVMHAEVHCLQQLPDIATAKGASVLVVELAADGVSYEEAVPCPMCSKGLVKTGVKIAYYSAIHGIDSISLSHKPE 255
            + KVMHAEVHCL QLPD   A G ++ +V+       Y    PCP C+K L + GV   YYS   GI    ++H P+
Sbjct:   60 QKKVMHAEVHCLVQLPDPTAAVGGTMWIVQTDDHQAGYGSGFPCPSCTKALCRVGVGDVYYSTGEGIQHTKITHLPD 136
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BLAST of mRNA_M-pyrifera_M_contig122386.4616.1 vs. uniprot
Match: A0A812TD68_9DINO (Hypothetical protein n=6 Tax=Sar TaxID=2698737 RepID=A0A812TD68_9DINO)

HSP 1 Score: 65.1 bits (157), Expect = 2.200e-10
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   22 SRSKVMHAEVHCLQQLPDIATAKGASVLVVELAADGVSYEEAVPCPMCSKGLVKTGVKIAYYSAIHGIDSISLSHKPE 255
            +R++V+HAEVHC QQL D+       +LVVEL   GV +++A PC MCS+G+ + GV    ++   GI   + +H+P+
Sbjct:  702 TRTRVLHAEVHCFQQLYDL-------ILVVELDGVGVGFDDAQPCRMCSRGVSRLGVAHILHTTQRGIAHRTTAHRPD 772
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122386.4616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A482RN90_9ARCH2.580e-1550.00CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S1NG78_9EUGL4.600e-1342.86Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A812TD68_9DINO2.200e-1041.03Hypothetical protein n=6 Tax=Sar TaxID=2698737 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122386contigM-pyrifera_M_contig122386:123..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score64.3
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog99158.XP_008883408.1
Hectar predicted targeting categoryother localisation
EggNOG OGs28S7K@1,2QYX4@2759,3YFZ8@5794,3YJVJ@5796,3YUAZ@5809
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size237
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.7473114-UTR-M-pyrifera_M_contig122386:122..1401622815743.7473114-UTR-M-pyrifera_M_contig122386:122..140Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122386 123..140 +
1692277548.6243947-UTR-M-pyrifera_M_contig122386:122..1401692277548.6243947-UTR-M-pyrifera_M_contig122386:122..140Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122386 123..140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.7577803-CDS-M-pyrifera_M_contig122386:140..3771622815743.7577803-CDS-M-pyrifera_M_contig122386:140..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122386 141..377 +
1692277548.6353536-CDS-M-pyrifera_M_contig122386:140..3771692277548.6353536-CDS-M-pyrifera_M_contig122386:140..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122386 141..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122386.4616.1prot_M-pyrifera_M_contig122386.4616.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122386 141..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122386.4616.1

>prot_M-pyrifera_M_contig122386.4616.1 ID=prot_M-pyrifera_M_contig122386.4616.1|Name=mRNA_M-pyrifera_M_contig122386.4616.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MSRSKVMHAEVHCLQQLPDIATAKGASVLVVELAADGVSYEEAVPCPMCS
KGLVKTGVKIAYYSAIHGIDSISLSHKPE
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mRNA from alignment at M-pyrifera_M_contig122386:123..377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122386.4616.1 ID=mRNA_M-pyrifera_M_contig122386.4616.1|Name=mRNA_M-pyrifera_M_contig122386.4616.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig122386:123..377+ (Macrocystis pyrifera P11B4 male)
AAACTCAAGTTGAAACACATGAGCAGGTCCAAGGTCATGCATGCAGAGGT
GCACTGCCTCCAGCAGCTGCCAGATATTGCTACAGCCAAGGGTGCCAGTG
TGCTAGTTGTGGAACTCGCTGCAGATGGAGTTTCCTACGAAGAAGCAGTC
CCTTGCCCAATGTGCTCCAAAGGACTCGTCAAAACAGGGGTCAAAATCGC
ATACTACTCCGCCATCCATGGCATTGACTCCATCTCACTCTCACACAAAC
CTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122386:123..377+

>mRNA_M-pyrifera_M_contig122386.4616.1 ID=mRNA_M-pyrifera_M_contig122386.4616.1|Name=mRNA_M-pyrifera_M_contig122386.4616.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig122386:123..377+ (Macrocystis pyrifera P11B4 male)
ATGAGCAGGTCCAAGGTCATGCATGCAGAGGTGCACTGCCTCCAGCAGCT
GCCAGATATTGCTACAGCCAAGGGTGCCAGTGTGCTAGTTGTGGAACTCG
CTGCAGATGGAGTTTCCTACGAAGAAGCAGTCCCTTGCCCAATGTGCTCC
AAAGGACTCGTCAAAACAGGGGTCAAAATCGCATACTACTCCGCCATCCA
TGGCATTGACTCCATCTCACTCTCACACAAACCTGAAATGAGCAGGTCCA
AGGTCATGCATGCAGAGGTGCACTGCCTCCAGCAGCTGCCAGATATTGCT
ACAGCCAAGGGTGCCAGTGTGCTAGTTGTGGAACTCGCTGCAGATGGAGT
TTCCTACGAAGAAGCAGTCCCTTGCCCAATGTGCTCCAAAGGACTCGTCA
AAACAGGGGTCAAAATCGCATACTACTCCGCCATCCATGGCATTGACTCC
ATCTCACTCTCACACAAACCTGAA
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