mRNA_M-pyrifera_M_contig122368.4612.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122368.4612.1
Unique NamemRNA_M-pyrifera_M_contig122368.4612.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A2P2JZB5_RHIMU (Uncharacterized protein MANES_14G011200 n=3 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JZB5_RHIMU)

HSP 1 Score: 69.3 bits (168), Expect = 2.270e-11
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDS-----YRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +R+M+ E+R    ++AAAF KRLAT SL F +  ++A+LVTL+ L+  +   R LLE      + S     Y+P    P+   ALAS LWELN+L    H
Sbjct:  585 LYNIILEYRPGRDKGEVLTEALRIMLCEDRQHDMQKAAAFVKRLATFSLCFGSAESMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYASDPNLSGALASVLWELNLLSEHYH 705
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A2G2ZSE0_CAPAN (Uncharacterized protein n=8 Tax=Capsicum TaxID=4071 RepID=A0A2G2ZSE0_CAPAN)

HSP 1 Score: 68.9 bits (167), Expect = 3.100e-11
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:   52 LMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEV-----SEDRANDSYRPMLDSPDNCKALASTLWELNVLEVRCH 348
            L   +++M+ ++R    +RAAAF KRLAT SLY  +  A+A+LVTL+ L+  +   R LLE      S   A   Y+P    P+   ALAS LWELN+L    H
Sbjct:  603 LAEALKIMLCDDRQHDMQRAAAFIKRLATFSLYSGSAEAMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGAIAKYQPYATDPNLSGALASVLWELNLLSKHYH 706
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A2P5APP1_PARAD (Nucleolar complex-associated protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5APP1_PARAD)

HSP 1 Score: 68.9 bits (167), Expect = 3.100e-11
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDS-----YRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +++M+ E+R    ++AAAF KRLAT SL F +  ++A+LVTL+ L+  +   R LLE      + S     Y+P    P+   ALAS LWELN+L    H
Sbjct:  587 LYNIILEYRPGRDQGEVLAEALKIMLCEDRQHDMQKAAAFVKRLATFSLCFGSTESMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYASDPNLSGALASVLWELNLLSKHYH 707
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: UPI0009013916 (nucleolar complex protein 3 homolog n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009013916)

HSP 1 Score: 68.6 bits (166), Expect = 4.220e-11
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEV-----SEDRANDSYRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +++M+ ++R    +RAAAF KRLAT SL F +  ++A+LVTL+ L+  +   R LLE      S   A   Y P    P+   ALAS LWELN+L    H
Sbjct:  580 LYNLILEYRPGRDQGEVLAEALKIMLCDDRQQDMQRAAAFIKRLATFSLCFGSAESMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGAIAKYHPYASDPNLSGALASVLWELNLLSKHYH 700
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A2C9UJL1_MANES (Uncharacterized protein n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UJL1_MANES)

HSP 1 Score: 68.6 bits (166), Expect = 4.240e-11
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDS-----YRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +++M+ E+R    ++AAAF KRLAT+SL F +  ++A+LVTL+ L+  +   R LLE      + S     Y+P    P+   ALAS LWELN+L    H
Sbjct:  627 LYNIILEYRPGRDQGEVLAEALKIMLCEDRQHDMQKAAAFVKRLATVSLCFGSAESMAALVTLKYLLQKNVKCRNLLENDAGGGSVSGSAAKYQPYASDPNLSGALASVLWELNLLSKHYH 747
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A803P6W1_CANSA (Uncharacterized protein n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A803P6W1_CANSA)

HSP 1 Score: 68.2 bits (165), Expect = 5.770e-11
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDS-----YRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +++M+ E+R    ++AAAF KRLAT SL F +  A+A+LVTL+ L+  +   R LLE      + S     Y P    P+   ALAS LWELN+L    H
Sbjct:  583 LYNIILEYRPGRDQGEVLAEALKIMLCEDRQHDMQKAAAFVKRLATFSLCFGSAEAMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGSIAKYHPYASDPNLSGALASVLWELNLLVKHYH 703
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A175YQK8_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YQK8_DAUCS)

HSP 1 Score: 68.2 bits (165), Expect = 5.780e-11
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLE-------VSEDRANDSYRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y+ +L      D    L   +++M+ ++R    +RAAAF KRLAT SL F    ++A+LVTL+ L+  +   R LLE       VS   AN  Y P    P+   ALAS LWELN+L    H
Sbjct:  592 LYQLILEYRPGRDKGEVLAEALKVMLCDDRQHDMQRAAAFIKRLATFSLCFGAAESMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGPVAN--YHPYSSDPNLSGALASVLWELNLLSKHYH 712
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A7J6DMI2_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6DMI2_CANSA)

HSP 1 Score: 68.2 bits (165), Expect = 5.910e-11
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDS-----YRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +++M+ E+R    ++AAAF KRLAT SL F +  A+A+LVTL+ L+  +   R LLE      + S     Y P    P+   ALAS LWELN+L    H
Sbjct:  583 LYNIILEYRPGRDQGEVLAEALKIMLCEDRQHDMQKAAAFVKRLATFSLCFGSAEAMAALVTLKHLLQKNVKCRNLLENDAGGGSVSGSIAKYHPYASDPNLSGALASVLWELNLLVKHYH 703
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BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A2G3CNL6_CAPCH (CBF domain-containing protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3CNL6_CAPCH)

HSP 1 Score: 67.8 bits (164), Expect = 6.530e-11
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   52 LMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEV-----SEDRANDSYRPMLDSPDNCKALASTLWELNVLEVRCH 348
            L   +++M+ ++R    +RAAAF KRLAT SLY  +  A+A+LVTL+ L+  +   R LLE      S   A   Y P    P+   ALAS LWELN+L    H
Sbjct:  141 LAEALKIMLCDDRQHDMQRAAAFIKRLATFSLYSGSAEAMAALVTLKHLLQKNVKCRNLLENDAVGGSVSGAIAKYLPYATDPNLSGALASVLWELNLLSKHYH 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Match: A0A484MF54_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MF54_9ASTE)

HSP 1 Score: 67.8 bits (164), Expect = 7.860e-11
Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:    1 IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLYFPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDS-----YRPMLDSPDNCKALASTLWELNVLEVRCH 348
            +Y  +L      D    L   +++M+ + R    +RAAAF KRLAT SL F +  ++A+LV L+ L+  + P R LLE      + S     Y P    P+   ALAS LWELN+L    H
Sbjct:  578 LYNLILEYRPGRDEGDVLAEALKIMLCDERHHDMQRAAAFIKRLATFSLCFGSAESMAALVALKHLLQKNVPCRNLLENDAGGGSVSGAIARYHPYATDPNLSGALASVLWELNLLSKHYH 698
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122368.4612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P2JZB5_RHIMU2.270e-1137.19Uncharacterized protein MANES_14G011200 n=3 Tax=Rh... [more]
A0A2G2ZSE0_CAPAN3.100e-1141.35Uncharacterized protein n=8 Tax=Capsicum TaxID=407... [more]
A0A2P5APP1_PARAD3.100e-1136.36Nucleolar complex-associated protein n=2 Tax=Canna... [more]
UPI00090139164.220e-1137.19nucleolar complex protein 3 homolog n=2 Tax=Ipomoe... [more]
A0A2C9UJL1_MANES4.240e-1136.36Uncharacterized protein n=4 Tax=Crotonoideae TaxID... [more]
A0A803P6W1_CANSA5.770e-1137.19Uncharacterized protein n=2 Tax=Cannabis sativa Ta... [more]
A0A175YQK8_DAUCS5.780e-1138.21Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
A0A7J6DMI2_CANSA5.910e-1137.19Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
A0A2G3CNL6_CAPCH6.530e-1141.35CBF domain-containing protein n=1 Tax=Capsicum chi... [more]
A0A484MF54_9ASTE7.860e-1136.36Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122368contigM-pyrifera_M_contig122368:178..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog44689.DDB0192052
KEGG koko:K14834
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022607,GO:0022613,GO:0030684,GO:0030687,GO:0030689,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044786,GO:0046483,GO:0065003,GO:0065004,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:1901360,GO:1901576,GO:1902299,GO:1990904
EggNOG free text desc.Nucleolar complex-associated protein
EggNOG OGs3X8RN@554915,COG5117@1,KOG2153@2759
COG Functional cat.JU
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.596991-CDS-M-pyrifera_M_contig122368:177..5251622815743.596991-CDS-M-pyrifera_M_contig122368:177..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122368 178..525 -
1692277548.5498967-CDS-M-pyrifera_M_contig122368:177..5251692277548.5498967-CDS-M-pyrifera_M_contig122368:177..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122368 178..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122368.4612.1prot_M-pyrifera_M_contig122368.4612.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122368 178..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122368.4612.1

>prot_M-pyrifera_M_contig122368.4612.1 ID=prot_M-pyrifera_M_contig122368.4612.1|Name=mRNA_M-pyrifera_M_contig122368.4612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
IYENLLRVPEEIDSVPQLMHCMRLMVSENRTVSSERAAAFCKRLATISLY
FPTNGAIASLVTLQRLMTFHPPVRQLLEVSEDRANDSYRPMLDSPDNCKA
LASTLWELNVLEVRCH
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mRNA from alignment at M-pyrifera_M_contig122368:178..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122368.4612.1 ID=mRNA_M-pyrifera_M_contig122368.4612.1|Name=mRNA_M-pyrifera_M_contig122368.4612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig122368:178..525- (Macrocystis pyrifera P11B4 male)
ATCTACGAGAACCTCCTCCGCGTGCCGGAGGAGATCGACAGCGTGCCCCA
GCTCATGCACTGCATGCGCCTGATGGTCTCGGAGAACCGCACGGTCTCCT
CAGAGCGAGCGGCAGCCTTCTGCAAGCGCCTGGCCACCATTTCCCTCTAC
TTTCCCACCAACGGTGCCATTGCGTCGCTGGTGACCCTGCAGAGGCTCAT
GACCTTCCACCCGCCCGTCCGCCAGCTGCTCGAGGTCAGCGAGGACCGCG
CCAACGACTCCTACAGGCCCATGCTCGACAGCCCGGACAACTGCAAGGCC
CTGGCCTCCACTTTGTGGGAGCTGAACGTGCTCGAGGTTCGCTGCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122368:178..525-

>mRNA_M-pyrifera_M_contig122368.4612.1 ID=mRNA_M-pyrifera_M_contig122368.4612.1|Name=mRNA_M-pyrifera_M_contig122368.4612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig122368:178..525- (Macrocystis pyrifera P11B4 male)
ATCTACGAGAACCTCCTCCGCGTGCCGGAGGAGATCGACAGCGTGCCCCA
GCTCATGCACTGCATGCGCCTGATGGTCTCGGAGAACCGCACGGTCTCCT
CAGAGCGAGCGGCAGCCTTCTGCAAGCGCCTGGCCACCATTTCCCTCTAC
TTTCCCACCAACGGTGCCATTGCGTCGCTGGTGACCCTGCAGAGGCTCAT
GACCTTCCACCCGCCCGTCCGCCAGCTGCTCGAGGTCAGCGAGGACCGCG
CCAACGACTCCTACAGGCCCATGCTCGACAGCCCGGACAACTGCAAGGCC
CTGGCCTCCACTTTGTGGGAGCTGAACGTGCTCGAGGTTCGCTGCCACAT
CTACGAGAACCTCCTCCGCGTGCCGGAGGAGATCGACAGCGTGCCCCAGC
TCATGCACTGCATGCGCCTGATGGTCTCGGAGAACCGCACGGTCTCCTCA
GAGCGAGCGGCAGCCTTCTGCAAGCGCCTGGCCACCATTTCCCTCTACTT
TCCCACCAACGGTGCCATTGCGTCGCTGGTGACCCTGCAGAGGCTCATGA
CCTTCCACCCGCCCGTCCGCCAGCTGCTCGAGGTCAGCGAGGACCGCGCC
AACGACTCCTACAGGCCCATGCTCGACAGCCCGGACAACTGCAAGGCCCT
GGCCTCCACTTTGTGGGAGCTGAACGTGCTCGAGGTTCGCTGCCAC
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