mRNA_M-pyrifera_M_contig122356.4609.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122356.4609.1
Unique NamemRNA_M-pyrifera_M_contig122356.4609.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A0L0GAJ5_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAJ5_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 1.490e-33
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   25 EGAIFRGDVQRLELENFLGVKEKQVLELGDYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSK 453
            +G +F  +++ L +ENFLGV+    +   D ++ VW ++G NG GKST++EA+TWC FG+F+RS+M A  AVND +    RV V +SNGYS+ER+RK+  LG  G  V   G+ L   +KG   A Q  ID LLG ++  + K
Sbjct:  601 DGQVFNANIKCLRMENFLGVQGGIYIPFQDIEEKVWLLEGENGCGKSTVVEAVTWCQFGKFVRSDMAAGDAVNDILDHGCRVVVEYSNGYSIERYRKHKTLGSNGARVYLHGQYLPQFEKGGMQATQQAIDDLLGVDYNRFLK 743          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A6A5BEE2_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BEE2_NAEFO)

HSP 1 Score: 130 bits (327), Expect = 6.060e-32
Identity = 64/159 (40.25%), Postives = 102/159 (64.15%), Query Frame = 1
Query:   28 GAIFRGDVQRLELENFLGVKEKQVLELGDYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEM-KADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLG----------------GTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSK 453
            G  FR +++ + ++NFLGV+     ++ + ++GVW+++G NG+GKST+LEA+TWC+F  FLRS+M K D+AVND   K+  V + F++GYS+ERFRKY+K G                GTG+ V  +G+ L   +KG+   +Q  ++ LLG N+  ++K
Sbjct:  473 GDTFRANLKSITIQNFLGVQGCITFDIKNMENGVWFLEGPNGSGKSTVLEAITWCMFDNFLRSDMSKVDYAVNDVTKKDCLVRLDFNSGYSIERFRKYTKAGANELPEDIATSSPERKGTGLRVFYEGKYLSEYEKGSLKDSQVALESLLGINYDMFTK 631          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: UPI001CFE6970 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE6970)

HSP 1 Score: 126 bits (317), Expect = 1.340e-30
Identity = 61/159 (38.36%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   28 GAIFRGDVQRLELENFLGVKEKQVLELGDYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEM-KADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLG----------------GTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSK 453
            G  F+ +++ + ++NFLG++    L++ + ++GVW+++G NG+GKST+LEA+TWC+F  FLRS+M K D+AVND   K+  V + F +GYS+ERFRKY+K G                GTG+ V    + +   +KG+   +Q  ++ LLG N+  ++K
Sbjct:  469 GDTFKANLKSITIQNFLGIQGCITLDIKNMENGVWFLEGANGSGKSTLLEAITWCMFDNFLRSDMSKVDYAVNDVAKKDCLVRIDFDSGYSIERFRKYTKTGASELPDNIAKLSPERKGTGLRVFYQDKYMSEYEKGSLKDSQVALESLLGINYDMFAK 627          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A3N4LJJ7_9PEZI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LJJ7_9PEZI)

HSP 1 Score: 124 bits (310), Expect = 1.170e-29
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    1 TGSVKTEREGAIFRGDVQRLELENFLGVKEKQVLELGDYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLG---GTGVVVRKDGEPLEGMDKGNRDAAQAGIDH-LLGTNFAAYSK 453
            T +  T    ++F+G ++ L ++NF  ++    L       G W++ G NG+GKST+LEA+ WCLFG+ LRS+M     VND VGKN  V + F NGYS+ERFRK++  G   G G+ + K+G+ +   ++G     Q  ++  +LG +FA ++K
Sbjct:  443 TSATSTNSSLSVFQGTLRNLTIQNFFSIQGTLSLPFFKLNPGTWFLTGPNGSGKSTVLEAIVWCLFGEVLRSDMGVADLVNDVVGKNCCVRIDFENGYSIERFRKFTSKGTGPGPGLKLYKNGQEVPDFERGETRKTQIALERDILGCDFATFTK 597          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A423V9B4_9PEZI (AAA_23 domain-containing protein n=1 Tax=Valsa sordida TaxID=252740 RepID=A0A423V9B4_9PEZI)

HSP 1 Score: 119 bits (299), Expect = 3.530e-28
Identity = 65/145 (44.83%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   34 IFRGDVQRLELENFLGVKEKQVLELGDYQDG-VWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSKVETL 465
            IF    Q L + NFLGV++    + G    G + +V GRNGAGKSTILEA+TWC FG+ +R  +  +  VND VG++  V++ FSNGY++ R+RK+ K+GG  VVV   G     ++K N  A QA ID LLG +F  Y +   L
Sbjct:  486 IFVAQPQVLNMTNFLGVQDTVTFDFGGLPRGSLAFVVGRNGAGKSTILEAMTWCQFGRCVRGGLAVNDVVNDVVGRDCEVSLEFSNGYTITRYRKH-KVGGNRVVVSLRGAVQTQLEKDNPRATQAAIDELLGIDFDTYIRTVVL 629          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A2P6NY10_9EUKA (AAA domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NY10_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 1.670e-27
Identity = 56/153 (36.60%), Postives = 95/153 (62.09%), Query Frame = 1
Query:   13 KTEREGAIFRGDVQRLELENFLGVKEKQVLELGDYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVT--FSNGYSVERFRKYSKLGGTGVVVRKDG--EPLEGMD--KGNRDAAQAGIDHLLGTNFAAYSK 453
            + +R G +F G+++ + + NF+GV+ +  +   + +DG+W ++G+NG+GKSTI+EAL+WC FG+F+RS+M  DF +NDQ       +VT  ++NG+ ++R R+  K        R     E +E +D  KG     Q  ++H+LG +F+ YSK
Sbjct:  540 EADRAGPVFVGNLREISMSNFMGVQGELKISFEEMKDGIWVMEGKNGSGKSTIIEALSWCQFGEFIRSDMNKDFVINDQTPSKEAASVTVEYTNGFIIKRSRRKGKPDVLQTYQRDPDTQEVMELLDNQKGELSNTQKTLNHILGIDFSTYSK 692          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: UPI002007D4CB (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Annulohypoxylon maeteangense TaxID=1927788 RepID=UPI002007D4CB)

HSP 1 Score: 115 bits (289), Expect = 7.770e-27
Identity = 60/154 (38.96%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    7 SVKTEREGAIFRGDVQRLELENFLGVKEKQVLELGD-YQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSKVETL 465
            +++T +   IF  D   +E+ NFLGV+    L+    +Q G+  + G NGAGKSTI+EA+ WC FGQ +R  +  +  VND   KN  V +TF+NGY++ RFRK+++    GV+V KDG      +  +  + QA ID LLG +F  + ++  L
Sbjct:  450 ALQTSKAETIFVADPVSIEITNFLGVQGTLSLDFKQHFQPGINLIVGHNGAGKSTIIEAIVWCQFGQCIRGGLGVNDVVNDVAKKNCNVRLTFANGYTISRFRKHAEFR-NGVIVEKDGVIQSQFEGPDAKSTQASIDSLLGVDFDTFIRIVLL 602          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A6V8QWJ5_9HYPO (Nuclease SbcCD subunit C n=2 Tax=Trichoderma asperellum TaxID=101201 RepID=A0A6V8QWJ5_9HYPO)

HSP 1 Score: 115 bits (287), Expect = 1.440e-26
Identity = 58/158 (36.71%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   34 IFRGDVQRLELENFLGVKEKQVLELG-DYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSKVETLPLSARCSHRSHTL 504
            +F  + +RL + NFLGV+    ++   D   G+ ++ G+NG+GKST++EA+ WC FGQ +RS +  +  VNDQVGK+  V + F+NGY++ R+RK+ K+ G  ++V   GEP    +       Q  I+ LLGT++  Y +   L   +  S  + TL
Sbjct:  456 VFVAEPRRLTITNFLGVQTTTTIDFRQDLPRGLTFLVGKNGSGKSTVIEAMVWCQFGQCIRSGLTVNDVVNDQVGKDCSVVLEFANGYTIARYRKH-KIFGNRIIVSLHGEPQPQFEHPTARTTQEAINDLLGTDYKTYVRTVVLSQESATSFLNSTL 612          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: UPI002008508A (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Daldinia vernicosa TaxID=114800 RepID=UPI002008508A)

HSP 1 Score: 115 bits (287), Expect = 1.440e-26
Identity = 61/154 (39.61%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    7 SVKTEREGAIFRGDVQRLELENFLGVKEKQVLELG-DYQDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSKVETL 465
            +V T     IF      +E+ NFLGV+    L+    +Q G+ ++ G+NGAGK+TI+EA+ WC FGQ +R  +  +  VND VGKN  V +TF+NGYS+ RFRK+S+     V+V KDG      +  +  ++QA I+ LLG +F  + +   L
Sbjct:  447 AVPTNESSRIFIAHPIAIEITNFLGVQGSLKLQFERHFQPGMNFIIGKNGAGKTTIIEAIVWCQFGQCIRDGLGVNDVVNDVVGKNCNVRLTFANGYSISRFRKHSEFHNR-VIVEKDGTVQPRFEGPSARSSQASINELLGVDFDTFIRTVLL 599          
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Match: A0A423V8S5_9PEZI (AAA_23 domain-containing protein n=1 Tax=Valsa malicola TaxID=356882 RepID=A0A423V8S5_9PEZI)

HSP 1 Score: 113 bits (282), Expect = 6.780e-26
Identity = 60/145 (41.38%), Postives = 87/145 (60.00%), Query Frame = 1
Query:   34 IFRGDVQRLELENFLGVKEKQVLELGDY-QDGVWYVQGRNGAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSVERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYSKVETL 465
            IF      L + NFLGV++    + GD  + G+  + GRNG+GKSTILEA+TWC FG+ +R  +  +  VND  G++  V++ F+NGY++ R+RK+ K+GG  VV+   G      +K    A QA ID LLG +F AY +   L
Sbjct:  476 IFVAQPLVLTMTNFLGVQDTVTFDFGDLPRGGLALLVGRNGSGKSTILEAMTWCQFGRCVRGGLAVNDVVNDVAGRDCEVSLAFANGYTITRYRKH-KIGGNRVVISLRGAEQTQFEKDTLRATQAAIDELLGIDFDAYIRTVVL 619          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122356.4609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0GAJ5_9EUKA1.490e-3344.06Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A6A5BEE2_NAEFO6.060e-3240.25Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFE69701.340e-3038.36uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A3N4LJJ7_9PEZI1.170e-2938.06P-loop containing nucleoside triphosphate hydrolas... [more]
A0A423V9B4_9PEZI3.530e-2844.83AAA_23 domain-containing protein n=1 Tax=Valsa sor... [more]
A0A2P6NY10_9EUKA1.670e-2736.60AAA domain-containing protein n=1 Tax=Planoprotost... [more]
UPI002007D4CB7.770e-2738.96P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6V8QWJ5_9HYPO1.440e-2636.71Nuclease SbcCD subunit C n=2 Tax=Trichoderma asper... [more]
UPI002008508A1.440e-2639.61P-loop containing nucleoside triphosphate hydrolas... [more]
A0A423V8S5_9PEZI6.780e-2641.38AAA_23 domain-containing protein n=1 Tax=Valsa mal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122356contigM-pyrifera_M_contig122356:12..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score133.3
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog72019.SARC_01811T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA repair
EggNOG OGs2RBZ2@2759,39FXU@33154,COG0419@1
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.4868276-CDS-M-pyrifera_M_contig122356:11..5181622815743.4868276-CDS-M-pyrifera_M_contig122356:11..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122356 12..518 +
1692277548.4942427-CDS-M-pyrifera_M_contig122356:11..5181692277548.4942427-CDS-M-pyrifera_M_contig122356:11..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122356 12..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122356.4609.1prot_M-pyrifera_M_contig122356.4609.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122356 12..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122356.4609.1

>prot_M-pyrifera_M_contig122356.4609.1 ID=prot_M-pyrifera_M_contig122356.4609.1|Name=mRNA_M-pyrifera_M_contig122356.4609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
TGSVKTEREGAIFRGDVQRLELENFLGVKEKQVLELGDYQDGVWYVQGRN
GAGKSTILEALTWCLFGQFLRSEMKADFAVNDQVGKNTRVAVTFSNGYSV
ERFRKYSKLGGTGVVVRKDGEPLEGMDKGNRDAAQAGIDHLLGTNFAAYS
KVETLPLSARCSHRSHTLK
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mRNA from alignment at M-pyrifera_M_contig122356:12..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122356.4609.1 ID=mRNA_M-pyrifera_M_contig122356.4609.1|Name=mRNA_M-pyrifera_M_contig122356.4609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig122356:12..518+ (Macrocystis pyrifera P11B4 male)
ACTGGAAGTGTGAAGACTGAGAGAGAGGGGGCCATTTTCAGAGGAGACGT ACAACGGTTGGAACTGGAGAACTTCTTGGGAGTGAAGGAGAAACAGGTGC TGGAACTTGGAGACTACCAAGATGGGGTGTGGTACGTTCAAGGCCGCAAC GGCGCGGGGAAGAGCACCATTCTGGAAGCCTTGACATGGTGTCTCTTTGG CCAGTTTCTGAGGTCAGAGATGAAGGCTGACTTTGCTGTCAATGACCAAG TGGGAAAGAACACGAGAGTGGCTGTCACCTTTTCCAATGGCTACTCTGTG GAGAGGTTCCGCAAGTACAGCAAGCTGGGTGGAACAGGCGTGGTGGTGAG AAAGGATGGGGAACCACTCGAGGGCATGGACAAAGGAAATAGAGATGCAG CCCAGGCAGGAATTGACCATCTGCTTGGCACGAACTTCGCCGCGTACAGC AAGGTAGAAACTCTCCCTCTTTCCGCGCGTTGCAGTCACCGTTCTCACAC CCTTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122356:12..518+

>mRNA_M-pyrifera_M_contig122356.4609.1 ID=mRNA_M-pyrifera_M_contig122356.4609.1|Name=mRNA_M-pyrifera_M_contig122356.4609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig122356:12..518+ (Macrocystis pyrifera P11B4 male)
ACTGGAAGTGTGAAGACTGAGAGAGAGGGGGCCATTTTCAGAGGAGACGT
ACAACGGTTGGAACTGGAGAACTTCTTGGGAGTGAAGGAGAAACAGGTGC
TGGAACTTGGAGACTACCAAGATGGGGTGTGGTACGTTCAAGGCCGCAAC
GGCGCGGGGAAGAGCACCATTCTGGAAGCCTTGACATGGTGTCTCTTTGG
CCAGTTTCTGAGGTCAGAGATGAAGGCTGACTTTGCTGTCAATGACCAAG
TGGGAAAGAACACGAGAGTGGCTGTCACCTTTTCCAATGGCTACTCTGTG
GAGAGGTTCCGCAAGTACAGCAAGCTGGGTGGAACAGGCGTGGTGGTGAG
AAAGGATGGGGAACCACTCGAGGGCATGGACAAAGGAAATAGAGATGCAG
CCCAGGCAGGAATTGACCATCTGCTTGGCACGAACTTCGCCGCGTACAGC
AAGGTAGAAACTCTCCCTCTTTCCGCGCGTTGCAGTCACCGTTCTCACAC
CCTTAAGACTGGAAGTGTGAAGACTGAGAGAGAGGGGGCCATTTTCAGAG
GAGACGTACAACGGTTGGAACTGGAGAACTTCTTGGGAGTGAAGGAGAAA
CAGGTGCTGGAACTTGGAGACTACCAAGATGGGGTGTGGTACGTTCAAGG
CCGCAACGGCGCGGGGAAGAGCACCATTCTGGAAGCCTTGACATGGTGTC
TCTTTGGCCAGTTTCTGAGGTCAGAGATGAAGGCTGACTTTGCTGTCAAT
GACCAAGTGGGAAAGAACACGAGAGTGGCTGTCACCTTTTCCAATGGCTA
CTCTGTGGAGAGGTTCCGCAAGTACAGCAAGCTGGGTGGAACAGGCGTGG
TGGTGAGAAAGGATGGGGAACCACTCGAGGGCATGGACAAAGGAAATAGA
GATGCAGCCCAGGCAGGAATTGACCATCTGCTTGGCACGAACTTCGCCGC
GTACAGCAAGGTAGAAACTCTCCCTCTTTCCGCGCGTTGCAGTCACCGTT
CTCACACCCTTAAG
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