mRNA_M-pyrifera_M_contig122355.4608.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122355.4608.1
Unique NamemRNA_M-pyrifera_M_contig122355.4608.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122355.4608.1 vs. uniprot
Match: A0A420YFJ3_9PEZI (MFS domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YFJ3_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 6.950e-8
Identity = 25/67 (37.31%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   73 SSKRR--ILTIVSLCAFVAPFANPLFLPGLGAIQAEFNASSTAIAFASSIYSLPLGVLPLVWGPASD 267
            SS+R+  ++T++S+C+F+APF++   L     + AE+N + T I   +++Y L +G+ P+VWGP S+
Sbjct:   85 SSRRKLVVVTLMSVCSFLAPFSSTSVLAATPEVAAEYNTTGTIINVTNAMYMLMMGISPIVWGPLSE 151
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BLAST of mRNA_M-pyrifera_M_contig122355.4608.1 vs. uniprot
Match: A0A250WU04_9CHLO (MFS domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WU04_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 8.400e-7
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   88 ILTIVSLCAFVAPFANPLFLPGLGAIQAEFNASSTAIAFASSIYSLPLGVLPLVWGPASD 267
            IL +V++ + + PF + ++LP L  I  +  A+ T +A   SIY   +G++ LVWGPASD
Sbjct:  106 ILLVVAIASLMVPFCDTIYLPALPDIATDLKATDTEVATTVSIYMFMVGLMALVWGPASD 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122355.4608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A420YFJ3_9PEZI6.950e-837.31MFS domain-containing protein n=1 Tax=Coniochaeta ... [more]
A0A250WU04_9CHLO8.400e-740.00MFS domain-containing protein n=1 Tax=Chlamydomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122355contigM-pyrifera_M_contig122355:262..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.450236-CDS-M-pyrifera_M_contig122355:261..5281622815743.450236-CDS-M-pyrifera_M_contig122355:261..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122355 262..528 +
1692277548.4852283-CDS-M-pyrifera_M_contig122355:261..5281692277548.4852283-CDS-M-pyrifera_M_contig122355:261..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122355 262..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122355.4608.1prot_M-pyrifera_M_contig122355.4608.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122355 262..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122355.4608.1

>prot_M-pyrifera_M_contig122355.4608.1 ID=prot_M-pyrifera_M_contig122355.4608.1|Name=mRNA_M-pyrifera_M_contig122355.4608.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
EDEALLSEALPQVNSDVYRENRWGSSKRRILTIVSLCAFVAPFANPLFLP
GLGAIQAEFNASSTAIAFASSIYSLPLGVLPLVWGPASD
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mRNA from alignment at M-pyrifera_M_contig122355:262..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122355.4608.1 ID=mRNA_M-pyrifera_M_contig122355.4608.1|Name=mRNA_M-pyrifera_M_contig122355.4608.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig122355:262..528+ (Macrocystis pyrifera P11B4 male)
GAAGACGAGGCTCTGCTGAGTGAGGCACTTCCCCAGGTGAATTCGGACGT
CTACCGAGAGAACCGGTGGGGCTCCAGCAAACGGAGGATTCTCACCATCG
TGTCGCTCTGCGCCTTCGTGGCCCCCTTCGCCAACCCGCTGTTCTTGCCT
GGCCTCGGCGCCATCCAAGCGGAGTTCAACGCCAGCTCCACAGCCATTGC
CTTTGCCAGCTCGATCTACAGCCTGCCGCTCGGAGTGCTGCCGCTGGTGT
GGGGGCCTGCCTCGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122355:262..528+

>mRNA_M-pyrifera_M_contig122355.4608.1 ID=mRNA_M-pyrifera_M_contig122355.4608.1|Name=mRNA_M-pyrifera_M_contig122355.4608.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig122355:262..528+ (Macrocystis pyrifera P11B4 male)
GAAGACGAGGCTCTGCTGAGTGAGGCACTTCCCCAGGTGAATTCGGACGT
CTACCGAGAGAACCGGTGGGGCTCCAGCAAACGGAGGATTCTCACCATCG
TGTCGCTCTGCGCCTTCGTGGCCCCCTTCGCCAACCCGCTGTTCTTGCCT
GGCCTCGGCGCCATCCAAGCGGAGTTCAACGCCAGCTCCACAGCCATTGC
CTTTGCCAGCTCGATCTACAGCCTGCCGCTCGGAGTGCTGCCGCTGGTGT
GGGGGCCTGCCTCGGACGAAGACGAGGCTCTGCTGAGTGAGGCACTTCCC
CAGGTGAATTCGGACGTCTACCGAGAGAACCGGTGGGGCTCCAGCAAACG
GAGGATTCTCACCATCGTGTCGCTCTGCGCCTTCGTGGCCCCCTTCGCCA
ACCCGCTGTTCTTGCCTGGCCTCGGCGCCATCCAAGCGGAGTTCAACGCC
AGCTCCACAGCCATTGCCTTTGCCAGCTCGATCTACAGCCTGCCGCTCGG
AGTGCTGCCGCTGGTGTGGGGGCCTGCCTCGGAC
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