mRNA_M-pyrifera_M_contig122353.4607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122353.4607.1
Unique NamemRNA_M-pyrifera_M_contig122353.4607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122353.4607.1 vs. uniprot
Match: UPI00147D3A1D (hypothetical protein n=1 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI00147D3A1D)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-11
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 ELRNQMLNGEKAAFWRALDFKSRDDMDFIIGRMMIVLSTNPPPEDILNKLSTELENFRVGLAVYGPALTDEQRAEILFKQAEILRGFKDDKKTC 282
            ++R  MLNG+ A FWR +D K+ D++++II R++         ED+    +  + +FRV LA YGPAL D QR  IL  Q  +L+  +   + C
Sbjct:  158 QIRANMLNGDMAQFWRIVDEKAPDEIEYIIDRLIAQEDEIKTREDVRRIFNEIVGDFRVTLATYGPALNDVQRKHILNGQLNMLKALESRPQLC 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122353.4607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00147D3A1D1.660e-1137.23hypothetical protein n=1 Tax=Ruegeria arenilitoris... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122353contigM-pyrifera_M_contig122353:237..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.3914258-UTR-M-pyrifera_M_contig122353:236..2511622815743.3914258-UTR-M-pyrifera_M_contig122353:236..251Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122353 237..251 +
1692277548.46945-UTR-M-pyrifera_M_contig122353:236..2511692277548.46945-UTR-M-pyrifera_M_contig122353:236..251Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122353 237..251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.413417-CDS-M-pyrifera_M_contig122353:251..5211622815743.413417-CDS-M-pyrifera_M_contig122353:251..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122353 252..521 +
1692277548.4772782-CDS-M-pyrifera_M_contig122353:251..5211692277548.4772782-CDS-M-pyrifera_M_contig122353:251..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122353 252..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122353.4607.1prot_M-pyrifera_M_contig122353.4607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122353 252..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122353.4607.1

>prot_M-pyrifera_M_contig122353.4607.1 ID=prot_M-pyrifera_M_contig122353.4607.1|Name=mRNA_M-pyrifera_M_contig122353.4607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MLNGEKAAFWRALDFKSRDDMDFIIGRMMIVLSTNPPPEDILNKLSTELE
NFRVGLAVYGPALTDEQRAEILFKQAEILRGFKDDKKTCA
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mRNA from alignment at M-pyrifera_M_contig122353:237..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122353.4607.1 ID=mRNA_M-pyrifera_M_contig122353.4607.1|Name=mRNA_M-pyrifera_M_contig122353.4607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig122353:237..521+ (Macrocystis pyrifera P11B4 male)
GAGTTGCGAAATCAGATGTTGAACGGAGAGAAGGCTGCCTTCTGGCGTGC
GCTTGATTTCAAGTCACGTGACGACATGGATTTCATCATCGGCAGGATGA
TGATTGTGCTTTCCACCAATCCCCCACCGGAGGACATACTGAACAAGCTG
AGCACGGAGCTAGAGAACTTTCGTGTCGGATTGGCTGTGTATGGACCAGC
TCTGACTGATGAACAAAGAGCTGAAATATTGTTCAAACAGGCAGAGATCC
TTAGGGGCTTCAAGGATGACAAAAAAACCTGTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122353:237..521+

>mRNA_M-pyrifera_M_contig122353.4607.1 ID=mRNA_M-pyrifera_M_contig122353.4607.1|Name=mRNA_M-pyrifera_M_contig122353.4607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig122353:237..521+ (Macrocystis pyrifera P11B4 male)
ATGTTGAACGGAGAGAAGGCTGCCTTCTGGCGTGCGCTTGATTTCAAGTC
ACGTGACGACATGGATTTCATCATCGGCAGGATGATGATTGTGCTTTCCA
CCAATCCCCCACCGGAGGACATACTGAACAAGCTGAGCACGGAGCTAGAG
AACTTTCGTGTCGGATTGGCTGTGTATGGACCAGCTCTGACTGATGAACA
AAGAGCTGAAATATTGTTCAAACAGGCAGAGATCCTTAGGGGCTTCAAGG
ATGACAAAAAAACCTGTGCAATGTTGAACGGAGAGAAGGCTGCCTTCTGG
CGTGCGCTTGATTTCAAGTCACGTGACGACATGGATTTCATCATCGGCAG
GATGATGATTGTGCTTTCCACCAATCCCCCACCGGAGGACATACTGAACA
AGCTGAGCACGGAGCTAGAGAACTTTCGTGTCGGATTGGCTGTGTATGGA
CCAGCTCTGACTGATGAACAAAGAGCTGAAATATTGTTCAAACAGGCAGA
GATCCTTAGGGGCTTCAAGGATGACAAAAAAACCTGTGCA
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