mRNA_M-pyrifera_M_contig122349.4605.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122349.4605.1
Unique NamemRNA_M-pyrifera_M_contig122349.4605.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A550CK16_9AGAR (Ankyrin repeat-containing domain protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CK16_9AGAR)

HSP 1 Score: 57.4 bits (137), Expect = 1.590e-7
Identity = 30/69 (43.48%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   31 KQLFTAVSQGDKKKLESLLSSKYSPDVKNDTHSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            K ++ A   GD ++++  LS    PD   +T++ MHAAA YGQ Q+L+ LI++G +VN++DS+G TPL+
Sbjct:    6 KNIWVAAGDGDLERVQVTLSPNI-PD--ENTYTPMHAAASYGQLQVLEYLISRGGDVNVIDSDGDTPLY 71          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A067PQU4_9AGAM (Uncharacterized protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067PQU4_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 1.600e-7
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   19 MQTMKQLFTAVSQGDKKKLESLLS----SKYSPDVKNDTHSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            +Q  K ++ A   GD ++++ L+     S  +PD   +T++ MHAAA YGQ QILD LI++G +VNI D +G TPL+
Sbjct:    7 VQPEKNIWVAAGDGDLQRVQELVERQSISPNAPD--QNTYTPMHAAASYGQLQILDYLISQGGDVNITDEDGDTPLY 81          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A0C9YQ33_9AGAR (Unplaced genomic scaffold K443scaffold_1, whole genome shotgun sequence n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9YQ33_9AGAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6
Identity = 27/70 (38.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   31 KQLFTAVSQGDKKKLESLLSSKYSPDVKN-DTHSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            K ++ A + GD ++++ L++   SP++ + +T++ MHAAA YGQ ++L  L+  G +VNI D +G TPL+
Sbjct:    7 KNIWVAAADGDLERVKELINQFISPNIPDPNTYTPMHAAASYGQIEVLAYLVANGGDVNITDEDGDTPLY 76          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A4R0R907_9APHY (Uncharacterized protein n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0R907_9APHY)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-6
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   31 KQLFTAVSQGDKKKLESLLSSK-YSPDVKN-DTHSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            K ++ A   GD  ++  L+  + YS ++ + +T++ MHAAA YG   IL+ L++KG +VNILDS+G TPL+
Sbjct:   11 KNIWVAAGDGDLDRVRELVEHQSYSANIPDSNTYTPMHAAASYGHIHILEYLVSKGGDVNILDSDGDTPLY 81          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A2A9NR82_9AGAR (Uncharacterized protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NR82_9AGAR)

HSP 1 Score: 54.7 bits (130), Expect = 1.440e-6
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   31 KQLFTAVSQGDKKKLESLLS-SKYSPDVKND-THSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            K ++ A   GD  ++  L+    +SP+V ++ T++ MHAAA YGQ  +L  LI++G N+NI D++G TPL+
Sbjct:    6 KNIWVAAGDGDINRVRELVDYHSFSPNVPDEHTYTPMHAAASYGQLDVLRYLISRGGNINITDADGDTPLY 76          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: D8Q5J6_SCHCM (Uncharacterized protein n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q5J6_SCHCM)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-6
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   31 KQLFTAVSQGDKKKLESLLSSKYSPDVKND-THSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            K ++ A   GD  +++  LS    P+V ++ T++ MHAAA YGQ Q+L+ LI++G +VN+ DS+G TPL+
Sbjct:    6 KNIWVAAGDGDLARVQVPLS----PNVPDENTYTPMHAAASYGQLQVLEYLISRGGDVNVTDSDGDTPLY 71          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: UPI0006B0DDD4 (tyrosine-protein kinase shark-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DDD4)

HSP 1 Score: 54.7 bits (130), Expect = 2.730e-6
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   37 LFTAVSQGDKKKLESLLSSKY-SPDVKN-DTHSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLHYGVK 249
            L  A  +GD   +  LL S Y S D KN +  S MH A   G  +ILD+L++ GANVNI D+ G TPLHY  +
Sbjct:  145 LHRATQEGDVMVVGELLKSCYRSLDAKNQEGQSAMHLACINGNNEILDMLLDAGANVNIKDAKGLTPLHYACR 217          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A369K0Y4_HYPMA (Uncharacterized protein n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K0Y4_HYPMA)

HSP 1 Score: 53.9 bits (128), Expect = 2.810e-6
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   31 KQLFTAVSQGDKKKLESLLSSK-YSPDVKND-THSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLH 237
            K ++ A   GD  ++  L+  +  SP++ +  T++ MHAAA YGQ ++LD LI++G +VN+ D +G TPL+
Sbjct:    4 KNIWVAAGDGDLARVRELVEQQSLSPNIPDPFTYTPMHAAASYGQLEVLDYLISRGGDVNVTDGDGDTPLY 74          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: A0A1A9UTA2_GLOAU (Uncharacterized protein n=5 Tax=Glossina TaxID=7393 RepID=A0A1A9UTA2_GLOAU)

HSP 1 Score: 52.0 bits (123), Expect = 3.360e-6
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   28 MKQLFTAVSQGDKKKLESLLSSKYSPDVKNDTHSL--MHAAAEYGQTQILDVLINKGANVNILDSNGATPL 234
            M  L  ++  G+  +++  L +K S D+ ++ +    +H AA+YGQ  +L+ LINKGAN+NI+D +G TPL
Sbjct:    1 MSDLVWSIKNGELDQVQLALEAK-SHDINSEVNGRYPLHYAADYGQYDVLEYLINKGANINIMDKHGITPL 70          
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Match: UPI0003F49B9F (uncharacterized protein n=1 Tax=Tremella mesenterica (strain ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL Y-6157 / RJB 2259-6 / UBC 559-6) TaxID=578456 RepID=UPI0003F49B9F)

HSP 1 Score: 53.1 bits (126), Expect = 5.990e-6
Identity = 30/79 (37.97%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   19 MQTMKQLFTAVSQGDKKKLESLLSSK-YSP-DVKNDTHSLMHAAAEYGQTQILDVLINKGANVNILDSNGATPLHYGVK 249
            +QT   ++ A S GD  ++  L+  + +SP ++  + +S MHAAA Y   ++LD LI+KG ++N++D +G TPL +GV+
Sbjct:    2 VQTSSNIWVAASDGDLDRVRHLIEVEGFSPNEMDTNRYSPMHAAASYAHLELLDYLISKGGDINLVDGDGDTPL-FGVE 79          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122349.4605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A550CK16_9AGAR1.590e-743.48Ankyrin repeat-containing domain protein n=1 Tax=A... [more]
A0A067PQU4_9AGAM1.600e-742.86Uncharacterized protein n=1 Tax=Jaapia argillacea ... [more]
A0A0C9YQ33_9AGAR1.020e-638.57Unplaced genomic scaffold K443scaffold_1, whole ge... [more]
A0A4R0R907_9APHY1.110e-642.25Uncharacterized protein n=1 Tax=Steccherinum ochra... [more]
A0A2A9NR82_9AGAR1.440e-640.85Uncharacterized protein n=1 Tax=Amanita thiersii S... [more]
D8Q5J6_SCHCM1.520e-642.86Uncharacterized protein n=1 Tax=Schizophyllum comm... [more]
UPI0006B0DDD42.730e-646.58tyrosine-protein kinase shark-like n=1 Tax=Limulus... [more]
A0A369K0Y4_HYPMA2.810e-639.44Uncharacterized protein n=1 Tax=Hypsizygus marmore... [more]
A0A1A9UTA2_GLOAU3.360e-639.44Uncharacterized protein n=5 Tax=Glossina TaxID=739... [more]
UPI0003F49B9F5.990e-637.97uncharacterized protein n=1 Tax=Tremella mesenteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122349contigM-pyrifera_M_contig122349:51..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.2908506-CDS-M-pyrifera_M_contig122349:50..3891622815743.2908506-CDS-M-pyrifera_M_contig122349:50..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122349 51..389 -
1692277548.4353485-CDS-M-pyrifera_M_contig122349:50..3891692277548.4353485-CDS-M-pyrifera_M_contig122349:50..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122349 51..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122349.4605.1prot_M-pyrifera_M_contig122349.4605.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122349 51..389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122349.4605.1

>prot_M-pyrifera_M_contig122349.4605.1 ID=prot_M-pyrifera_M_contig122349.4605.1|Name=mRNA_M-pyrifera_M_contig122349.4605.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MSKQPDMQTMKQLFTAVSQGDKKKLESLLSSKYSPDVKNDTHSLMHAAAE
YGQTQILDVLINKGANVNILDSNGATPLHYGVKHNRPNALRFLLERGASL
AVKDSNGAAPLHW
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mRNA from alignment at M-pyrifera_M_contig122349:51..389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122349.4605.1 ID=mRNA_M-pyrifera_M_contig122349.4605.1|Name=mRNA_M-pyrifera_M_contig122349.4605.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig122349:51..389- (Macrocystis pyrifera P11B4 male)
ATGTCGAAACAGCCGGATATGCAGACGATGAAGCAGCTCTTCACAGCTGT GTCGCAGGGGGACAAGAAGAAGCTGGAGTCCCTCCTCTCGAGCAAGTACT CTCCCGACGTGAAGAACGACACGCACTCGCTCATGCACGCGGCGGCAGAA TACGGCCAGACGCAGATCCTGGACGTGCTGATCAACAAGGGCGCCAACGT GAATATTCTCGACTCGAACGGAGCCACGCCGCTGCACTACGGCGTGAAGC ACAACCGGCCCAACGCGCTGCGCTTCCTGCTGGAGCGTGGGGCCTCCCTG GCGGTGAAGGACTCGAACGGCGCGGCGCCGCTGCACTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122349:51..389-

>mRNA_M-pyrifera_M_contig122349.4605.1 ID=mRNA_M-pyrifera_M_contig122349.4605.1|Name=mRNA_M-pyrifera_M_contig122349.4605.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig122349:51..389- (Macrocystis pyrifera P11B4 male)
ATGTCGAAACAGCCGGATATGCAGACGATGAAGCAGCTCTTCACAGCTGT
GTCGCAGGGGGACAAGAAGAAGCTGGAGTCCCTCCTCTCGAGCAAGTACT
CTCCCGACGTGAAGAACGACACGCACTCGCTCATGCACGCGGCGGCAGAA
TACGGCCAGACGCAGATCCTGGACGTGCTGATCAACAAGGGCGCCAACGT
GAATATTCTCGACTCGAACGGAGCCACGCCGCTGCACTACGGCGTGAAGC
ACAACCGGCCCAACGCGCTGCGCTTCCTGCTGGAGCGTGGGGCCTCCCTG
GCGGTGAAGGACTCGAACGGCGCGGCGCCGCTGCACTGGATGTCGAAACA
GCCGGATATGCAGACGATGAAGCAGCTCTTCACAGCTGTGTCGCAGGGGG
ACAAGAAGAAGCTGGAGTCCCTCCTCTCGAGCAAGTACTCTCCCGACGTG
AAGAACGACACGCACTCGCTCATGCACGCGGCGGCAGAATACGGCCAGAC
GCAGATCCTGGACGTGCTGATCAACAAGGGCGCCAACGTGAATATTCTCG
ACTCGAACGGAGCCACGCCGCTGCACTACGGCGTGAAGCACAACCGGCCC
AACGCGCTGCGCTTCCTGCTGGAGCGTGGGGCCTCCCTGGCGGTGAAGGA
CTCGAACGGCGCGGCGCCGCTGCACTGG
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