mRNA_M-pyrifera_M_contig122331.4602.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122331.4602.1
Unique NamemRNA_M-pyrifera_M_contig122331.4602.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Match: A0A7S2AQC7_9CHLO (Protein phosphatase n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AQC7_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 3.350e-6
Identity = 28/59 (47.46%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   40 IPDPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADGVGGWAEMGVDPS 216
            IP P K +KGGEDA F                 +  D   I+GVADGVGGWAE+GVDP+
Sbjct:   21 IPHPAKADKGGEDACFAG---------------VRDDGAAIVGVADGVGGWAELGVDPA 64
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BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Match: A0A7S2YUL3_9CHLO (Protein phosphatase (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2YUL3_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 3.790e-6
Identity = 28/59 (47.46%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   40 IPDPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADGVGGWAEMGVDPS 216
            IP P K +KGGEDA F                 +  D   I+GVADGVGGWAE+GVDP+
Sbjct:  142 IPHPAKADKGGEDACFAG---------------VRDDGATIVGVADGVGGWAELGVDPA 185
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BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Match: A0A6A5ZI65_9PLEO (Protein phosphatase n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5ZI65_9PLEO)

HSP 1 Score: 50.4 bits (119), Expect = 1.850e-5
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:   46 DPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADGVGGWAEMGVDPS 216
            D +KR + G+DALF++              Q+   HG   GVADGVGGW E GVDP+
Sbjct:  129 DKRKRSRSGQDALFWS--------------QVGTTHGTAFGVADGVGGWVESGVDPA 171
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BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Match: R0IN96_SETT2 (Protein phosphatase n=1 Tax=Setosphaeria turcica (strain 28A) TaxID=671987 RepID=R0IN96_SETT2)

HSP 1 Score: 50.1 bits (118), Expect = 2.530e-5
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:   46 DPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADGVGGWAEMGVDPS 216
            DP +R K G+DA FF+              Q+ + H    GVADGVGGW E G+DP+
Sbjct:  135 DPHRRAKSGQDAFFFS--------------QVGNTHTTTFGVADGVGGWVESGLDPA 177
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BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Match: A0A5B8MX17_9CHLO (Protein phosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MX17_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 4.650e-5
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   34 YCIPDPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADGVGGWAEMGVDPS 216
            + IP P K +KGGED+ +FT+ +   S         +  + + +GVADGV GWAE GVDP+
Sbjct:   75 FVIPHPAKVDKGGEDS-YFTYERRSSS---------NEVYSITMGVADGVSGWAEDGVDPA 125
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BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Match: A0A7I8L8P0_SPIIN (Protein phosphatase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L8P0_SPIIN)

HSP 1 Score: 48.5 bits (114), Expect = 8.520e-5
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   34 YCIPDPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADGVGGWAEMGVDPS 216
            + IP P+K  +GGEDA F  +               SH+ GV LGVADGV GWAE  VDPS
Sbjct:   61 HLIPHPKKVGRGGEDAFFVKN---------------SHNGGV-LGVADGVSGWAERNVDPS 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122331.4602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2AQC7_9CHLO3.350e-647.46Protein phosphatase n=2 Tax=Pycnococcus provasolii... [more]
A0A7S2YUL3_9CHLO3.790e-647.46Protein phosphatase (Fragment) n=1 Tax=Pycnococcus... [more]
A0A6A5ZI65_9PLEO1.850e-543.86Protein phosphatase n=1 Tax=Lophiotrema nucula Tax... [more]
R0IN96_SETT22.530e-542.11Protein phosphatase n=1 Tax=Setosphaeria turcica (... [more]
A0A5B8MX17_9CHLO4.650e-542.62Protein phosphatase n=1 Tax=Chloropicon primus Tax... [more]
A0A7I8L8P0_SPIIN8.520e-547.54Protein phosphatase n=2 Tax=Spirodela intermedia T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122331contigM-pyrifera_M_contig122331:298..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.1564338-UTR-M-pyrifera_M_contig122331:297..3271622815743.1564338-UTR-M-pyrifera_M_contig122331:297..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122331 298..327 +
1692277548.39052-UTR-M-pyrifera_M_contig122331:297..3271692277548.39052-UTR-M-pyrifera_M_contig122331:297..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122331 298..327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.1666627-CDS-M-pyrifera_M_contig122331:327..5131622815743.1666627-CDS-M-pyrifera_M_contig122331:327..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122331 328..513 +
1692277548.399035-CDS-M-pyrifera_M_contig122331:327..5131692277548.399035-CDS-M-pyrifera_M_contig122331:327..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122331 328..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122331.4602.1prot_M-pyrifera_M_contig122331.4602.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122331 328..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122331.4602.1

>prot_M-pyrifera_M_contig122331.4602.1 ID=prot_M-pyrifera_M_contig122331.4602.1|Name=mRNA_M-pyrifera_M_contig122331.4602.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MYCIPDPQKREKGGEDALFFTHHKYCISHPPKKTWQLSHDHGVILGVADG
VGGWAEMGVDPS
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mRNA from alignment at M-pyrifera_M_contig122331:298..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122331.4602.1 ID=mRNA_M-pyrifera_M_contig122331.4602.1|Name=mRNA_M-pyrifera_M_contig122331.4602.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig122331:298..513+ (Macrocystis pyrifera P11B4 male)
ACTCGAAAGAAGGGGGCGCCCACTCCGCAGATGTATTGCATTCCCGACCC
CCAGAAGCGCGAGAAGGGCGGAGAGGACGCCCTCTTCTTCACACACCACA
AGTACTGCATCTCCCACCCGCCCAAGAAGACCTGGCAGCTCTCCCACGAC
CACGGCGTCATCCTCGGCGTTGCAGACGGCGTCGGAGGCTGGGCAGAGAT
GGGCGTGGACCCCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122331:298..513+

>mRNA_M-pyrifera_M_contig122331.4602.1 ID=mRNA_M-pyrifera_M_contig122331.4602.1|Name=mRNA_M-pyrifera_M_contig122331.4602.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig122331:298..513+ (Macrocystis pyrifera P11B4 male)
ATGTATTGCATTCCCGACCCCCAGAAGCGCGAGAAGGGCGGAGAGGACGC
CCTCTTCTTCACACACCACAAGTACTGCATCTCCCACCCGCCCAAGAAGA
CCTGGCAGCTCTCCCACGACCACGGCGTCATCCTCGGCGTTGCAGACGGC
GTCGGAGGCTGGGCAGAGATGGGCGTGGACCCCTCCATGTATTGCATTCC
CGACCCCCAGAAGCGCGAGAAGGGCGGAGAGGACGCCCTCTTCTTCACAC
ACCACAAGTACTGCATCTCCCACCCGCCCAAGAAGACCTGGCAGCTCTCC
CACGACCACGGCGTCATCCTCGGCGTTGCAGACGGCGTCGGAGGCTGGGC
AGAGATGGGCGTGGACCCCTCC
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