mRNA_M-pyrifera_M_contig1223.4594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1223.4594.1
Unique NamemRNA_M-pyrifera_M_contig1223.4594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.640e-29
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  111 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.050e-28
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  141 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 281
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.120e-28
Identity = 66/143 (46.15%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RMG+ R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  733 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMGDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 873
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.750e-28
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  231 YGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.110e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  410 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 550
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.240e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  475 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 615
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5LM52_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM52_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.340e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  740 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 880
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.340e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct:  753 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 893
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.360e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct: 1003 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 1143
[Close]
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.370e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN-SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEWDWMRYLEAGLKEFGIKPEG----WREAAHKAGRWFRRVEEGA 414
            YGC +WS +     +L   H++ L RC+GW KRKR DR LSYA AL++    E++E TVR+  RRL FA  V RM + R PKR++ G M G  GY GGQE DW+  L   L  FG+K E     W+E+A     W+ ++E+GA
Sbjct: 1124 YGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK--RRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 1264
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1223.4594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSH7_9PHAE6.640e-2945.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE1.050e-2845.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L144_9PHAE1.120e-2846.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE3.750e-2845.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JF72_9PHAE1.110e-2745.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE1.240e-2745.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LM52_9PHAE1.340e-2745.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE1.340e-2745.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE1.360e-2745.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE1.370e-2745.45Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1223contigM-pyrifera_M_contig1223:5028..5441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog7897.ENSLACP00000000641
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
Ec32 ortholog descriptionActin family
Ec32 orthologEc-10_002070.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.7489984-CDS-M-pyrifera_M_contig1223:5027..54411622815742.7489984-CDS-M-pyrifera_M_contig1223:5027..5441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1223 5028..5441 -
1692277548.2090476-CDS-M-pyrifera_M_contig1223:5027..54411692277548.2090476-CDS-M-pyrifera_M_contig1223:5027..5441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1223 5028..5441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1223.4594.1prot_M-pyrifera_M_contig1223.4594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1223 5028..5441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1223.4594.1

>prot_M-pyrifera_M_contig1223.4594.1 ID=prot_M-pyrifera_M_contig1223.4594.1|Name=mRNA_M-pyrifera_M_contig1223.4594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
YGCVTWSPSKTGDGRLREVHQKMLLRCLGWRKRKREDRILSYASALLRTN
SESVETTVRRHRRRLLFADLVTRMGEERRPKRVMFGEMVGSKGYSGGQEW
DWMRYLEAGLKEFGIKPEGWREAAHKAGRWFRRVEEGA
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mRNA from alignment at M-pyrifera_M_contig1223:5028..5441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1223.4594.1 ID=mRNA_M-pyrifera_M_contig1223.4594.1|Name=mRNA_M-pyrifera_M_contig1223.4594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig1223:5028..5441- (Macrocystis pyrifera P11B4 male)
TACGGATGTGTTACTTGGAGCCCGAGCAAGACTGGTGACGGCAGGCTACG
GGAAGTCCACCAAAAGATGCTCCTCCGATGCCTCGGCTGGCGAAAACGAA
AGCGCGAGGACCGCATTCTATCTTATGCCAGCGCGCTTCTCAGGACAAAC
TCCGAGAGCGTAGAGACGACGGTACGCAGGCACAGGCGTAGACTATTATT
TGCGGATTTGGTGACACGCATGGGAGAGGAGCGCCGGCCGAAAAGGGTGA
TGTTTGGGGAAATGGTCGGGAGCAAGGGCTACTCTGGAGGACAGGAGTGG
GACTGGATGAGGTACCTTGAGGCGGGCCTCAAGGAGTTCGGCATCAAGCC
CGAAGGGTGGCGCGAGGCAGCGCATAAAGCCGGCAGATGGTTCCGACGGG
TCGAGGAAGGGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1223:5028..5441-

>mRNA_M-pyrifera_M_contig1223.4594.1 ID=mRNA_M-pyrifera_M_contig1223.4594.1|Name=mRNA_M-pyrifera_M_contig1223.4594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig1223:5028..5441- (Macrocystis pyrifera P11B4 male)
TACGGATGTGTTACTTGGAGCCCGAGCAAGACTGGTGACGGCAGGCTACG
GGAAGTCCACCAAAAGATGCTCCTCCGATGCCTCGGCTGGCGAAAACGAA
AGCGCGAGGACCGCATTCTATCTTATGCCAGCGCGCTTCTCAGGACAAAC
TCCGAGAGCGTAGAGACGACGGTACGCAGGCACAGGCGTAGACTATTATT
TGCGGATTTGGTGACACGCATGGGAGAGGAGCGCCGGCCGAAAAGGGTGA
TGTTTGGGGAAATGGTCGGGAGCAAGGGCTACTCTGGAGGACAGGAGTGG
GACTGGATGAGGTACCTTGAGGCGGGCCTCAAGGAGTTCGGCATCAAGCC
CGAAGGGTGGCGCGAGGCAGCGCATAAAGCCGGCAGATGGTTCCGACGGG
TCGAGGAAGGGGCGTACGGATGTGTTACTTGGAGCCCGAGCAAGACTGGT
GACGGCAGGCTACGGGAAGTCCACCAAAAGATGCTCCTCCGATGCCTCGG
CTGGCGAAAACGAAAGCGCGAGGACCGCATTCTATCTTATGCCAGCGCGC
TTCTCAGGACAAACTCCGAGAGCGTAGAGACGACGGTACGCAGGCACAGG
CGTAGACTATTATTTGCGGATTTGGTGACACGCATGGGAGAGGAGCGCCG
GCCGAAAAGGGTGATGTTTGGGGAAATGGTCGGGAGCAAGGGCTACTCTG
GAGGACAGGAGTGGGACTGGATGAGGTACCTTGAGGCGGGCCTCAAGGAG
TTCGGCATCAAGCCCGAAGGGTGGCGCGAGGCAGCGCATAAAGCCGGCAG
ATGGTTCCGACGGGTCGAGGAAGGGGCG
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