mRNA_M-pyrifera_M_contig122254.4592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig122254.4592.1
Unique Name	mRNA_M-pyrifera_M_contig122254.4592.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.800e-9
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  ++DP F++  +QST+
Sbjct:  111 DYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDPTFNVLNMQSTV 169

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.590e-9
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            NY  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  ++DP F++  +QST+
Sbjct:  154 NYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTM 212

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BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.930e-8
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  ++DP F++  +QST+
Sbjct:   17 DYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTM 75

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.330e-8
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  ++DP F++  +QST+
Sbjct:  130 DYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTM 188

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.580e-8
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  ++DP F +  +QST+
Sbjct:   17 DYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFSVLDMQSTM 75

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.050e-8
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL   +DP F++  +QST+
Sbjct:   87 DYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTM 145

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 8.600e-8
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG+ + ++D+KL  ++DP F++  +QST+
Sbjct:   90 DYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEHKDVKLMVFRDPTFNVLDMQSTM 148

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5KDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.560e-7
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDL 156
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KLT ++DP F++
Sbjct:  111 DYFNQKHLLRTQLDKMGEPISDRRFKDIRVQGFSDEYKDVKLTVFRDPTFNV 162

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.980e-7
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  ++DP F++  + ST+
Sbjct:  172 DYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTM 230

[Close]

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Match: A0A6H5JQF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF5_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.720e-7
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 1

Query:    1 NYIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLSKIQSTI 177
            +Y  Q   LR++L  + EP++DR F DI VQG  + Y+D+KL  +++P F++  +Q T+
Sbjct:   17 DYFNQKHLLRTQLDKMGEPISDRRFKDIGVQGFSDEYKDVKLMVFRNPTFNVLDMQPTM 75

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig122254.4592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
A0A6H5L2I7_9PHAE	2.800e-9	42.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF66_9PHAE	6.590e-9	44.07	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KZM5_9PHAE	2.930e-8	42.37	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KT84_9PHAE	3.330e-8	42.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKH7_9PHAE	4.580e-8	42.37	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5JLQ5_9PHAE	5.050e-8	42.37	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5K0G3_9PHAE	8.600e-8	40.68	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KDC9_9PHAE	2.560e-7	44.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L580_9PHAE	2.980e-7	40.68	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JQF5_9PHAE	3.720e-7	38.98	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig122254	contig	M-pyrifera_M_contig122254:32..241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	210
Cds size	201
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815742.6172316-UTR-M-pyrifera_M_contig122254:31..40	1622815742.6172316-UTR-M-pyrifera_M_contig122254:31..40	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig122254 32..40 +
1692277548.1478093-UTR-M-pyrifera_M_contig122254:31..40	1692277548.1478093-UTR-M-pyrifera_M_contig122254:31..40	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig122254 32..40 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815742.6286576-CDS-M-pyrifera_M_contig122254:40..241	1622815742.6286576-CDS-M-pyrifera_M_contig122254:40..241	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig122254 41..241 +
1692277548.1556013-CDS-M-pyrifera_M_contig122254:40..241	1692277548.1556013-CDS-M-pyrifera_M_contig122254:40..241	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig122254 41..241 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig122254.4592.1	prot_M-pyrifera_M_contig122254.4592.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig122254 41..241 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig122254:32..241+
coding sequence from alignment at M-pyrifera_M_contig122254:32..241+

protein sequence of mRNA_M-pyrifera_M_contig122254.4592.1

>prot_M-pyrifera_M_contig122254.4592.1 ID=prot_M-pyrifera_M_contig122254.4592.1|Name=mRNA_M-pyrifera_M_contig122254.4592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MQATRLRSRLAAVKEPVTDRHFTDIIVQGLPESYRDIKLTTYKDPDFDLS
KIQSTIPLQLTPRFCC*

mRNA from alignment at M-pyrifera_M_contig122254:32..241+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig122254.4592.1 ID=mRNA_M-pyrifera_M_contig122254.4592.1|Name=mRNA_M-pyrifera_M_contig122254.4592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig122254:32..241+ (Macrocystis pyrifera P11B4 male)
AACTACATCATGCAGGCAACACGACTTCGTAGTCGTCTGGCCGCGGTCAA
GGAACCTGTCACCGACCGCCACTTCACCGACATCATCGTCCAAGGACTCC
CGGAGAGCTACCGCGACATCAAGCTGACGACGTATAAGGACCCGGATTTC
GACCTGTCGAAGATCCAATCAACAATACCTCTTCAGCTAACCCCACGTTT
CTGTTGTTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122254:32..241+

>mRNA_M-pyrifera_M_contig122254.4592.1 ID=mRNA_M-pyrifera_M_contig122254.4592.1|Name=mRNA_M-pyrifera_M_contig122254.4592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig122254:32..241+ (Macrocystis pyrifera P11B4 male)
ATGCAGGCAACACGACTTCGTAGTCGTCTGGCCGCGGTCAAGGAACCTGT
CACCGACCGCCACTTCACCGACATCATCGTCCAAGGACTCCCGGAGAGCT
ACCGCGACATCAAGCTGACGACGTATAAGGACCCGGATTTCGACCTGTCG
AAGATCCAATCAACAATACCTCTTCAGCTAACCCCACGTTTCTGTTGTTG
AATGCAGGCAACACGACTTCGTAGTCGTCTGGCCGCGGTCAAGGAACCTG
TCACCGACCGCCACTTCACCGACATCATCGTCCAAGGACTCCCGGAGAGC
TACCGCGACATCAAGCTGACGACGTATAAGGACCCGGATTTCGACCTGTC
GAAGATCCAATCAACAATACCTCTTCAGCTAACCCCACGTTTCTGTTGTT
GA