mRNA_M-pyrifera_M_contig122245.4590.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122245.4590.1
Unique NamemRNA_M-pyrifera_M_contig122245.4590.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: A0A8J9ZED1_BRALA (Hypp1028 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZED1_BRALA)

HSP 1 Score: 69.7 bits (169), Expect = 5.370e-12
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   +N + ++ P+FE    +  W +T G+M   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  367 FITVMDKLRLEIRAMDEIQPDLRELLETMNRLSSLPPDFEGKTTVSRWLQTFGTMQAHDELDDNQVRQMLFDLESAYNAFNRQL 450
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BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: C3ZD31_BRAFL (Vacuolar protein sorting-associated protein 28 homolog n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZD31_BRAFL)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   +N + ++ P+FE    +  W +T  +M   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  134 FITVMDKLRLEIRAMDEIQPDLRELLETMNRLSSLPPDFEGKATVSRWLQTFSNMQAHDELDDNQVRQMLFDLESAYNAFNRQL 217
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BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: L8H286_ACACA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H286_ACACA)

HSP 1 Score: 67.0 bits (162), Expect = 1.120e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHLGIG 261
            F+TAMD L+    +  ++ P +  +   LN I A++P FE    + +W   + SM   +EL+++QVRQL FDLE +Y A +N LG G
Sbjct:  114 FITAMDSLKLNMNAIDQVHPLLTDLFESLNRISALAPNFEGKAKVRHWLSLMASMKASDELNDEQVRQLLFDLETSYTAFHNSLGGG 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: UPI001C3555A8 ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C3555A8)

HSP 1 Score: 65.5 bits (158), Expect = 3.880e-11
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   +N +  + P+ E+ + +  W  T+ SM   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  108 FITVMDKLRLEIRAMDEIQPDLRELMETMNRMSNMPPDSEAKDKVSLWLTTLSSMSASDELDDNQVRQMLFDLESAYNAFNRFL 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: A0A7S4HWQ0_9EUKA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HWQ0_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 4.110e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+TAMD L+   ++  +L P ++ I + LN IP+++ EF+  E I  W   +  MD  EEL+ +QVRQL FDLE AYNA    L
Sbjct:  137 FITAMDSLKLDMKAVDQLQPLLVDILSNLNAIPSMN-EFDGKEKIVAWLTILNGMDASEELNSNQVRQLLFDLETAYNAFYKSL 219
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BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: A0A7J7R4B4_MYOMY (Vacuolar protein sorting-associated protein 28 homolog n=4 Tax=Laurasiatheria TaxID=314145 RepID=A0A7J7R4B4_MYOMY)

HSP 1 Score: 65.9 bits (159), Expect = 4.110e-11
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   ++ +  + P+FE  + +  W +T+  M   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  136 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDNQVRQMLFDLESAYNAFNRFL 219
[Close]
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: UPI000777D620 (vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Coturnix japonica TaxID=93934 RepID=UPI000777D620)

HSP 1 Score: 64.7 bits (156), Expect = 4.210e-11
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+   + P++ ++   +N + A+  +FE    + +W +T+ SM   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:   75 FITIMDKLRLEIRAXXXIQPDLRELLETMNRMSALPSDFEGRHHVLHWLQTLSSMSASDELDDNQVRQMLFDLESAYNAFNRCL 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: A0A7J7R432_MYOMY (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A7J7R432_MYOMY)

HSP 1 Score: 65.9 bits (159), Expect = 4.280e-11
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   ++ +  + P+FE  + +  W +T+  M   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  139 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDNQVRQMLFDLESAYNAFNRFL 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: A0A3Q2WKV0_HAPBU (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Haplochromis burtoni TaxID=8153 RepID=A0A3Q2WKV0_HAPBU)

HSP 1 Score: 65.5 bits (158), Expect = 4.390e-11
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   +N +  + P+ E+ + +  W  T+ SM   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  116 FITVMDKLRLEIRAMDEIQPDLRELMETMNRMSNMPPDSEAKDKVSLWLTTLSSMSASDELDDNQVRQMLFDLESAYNAFNRFL 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Match: A0A7J7RLE4_PIPKU (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J7RLE4_PIPKU)

HSP 1 Score: 65.9 bits (159), Expect = 4.610e-11
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 FVTAMDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGSMDLLEELDEDQVRQLRFDLEKAYNALNNHL 252
            F+T MD L    R+  ++ P++ ++   ++ +  + P+FE  + +  W +T+  M   +ELD++QVRQ+ FDLE AYNA N  L
Sbjct:  145 FITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDNQVRQMLFDLESAYNAFNRFL 228
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122245.4590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9ZED1_BRALA5.370e-1238.10Hypp1028 protein n=1 Tax=Branchiostoma lanceolatum... [more]
C3ZD31_BRAFL1.030e-1136.90Vacuolar protein sorting-associated protein 28 hom... [more]
L8H286_ACACA1.120e-1139.08Vacuolar protein sorting-associated protein 28 hom... [more]
UPI001C3555A83.880e-1136.90(large yellow croaker) hypothetical protein n=1 Ta... [more]
A0A7S4HWQ0_9EUKA4.110e-1144.05Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7J7R4B4_MYOMY4.110e-1135.71Vacuolar protein sorting-associated protein 28 hom... [more]
UPI000777D6204.210e-1138.10vacuolar protein sorting-associated protein 28 hom... [more]
A0A7J7R432_MYOMY4.280e-1135.71Vacuolar protein sorting-associated protein 28 hom... [more]
A0A3Q2WKV0_HAPBU4.390e-1136.90Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7J7RLE4_PIPKU4.610e-1135.71Vacuolar protein sorting-associated protein 28 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122245contigM-pyrifera_M_contig122245:263..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.9
Seed ortholog evalue4e-08
Seed eggNOG ortholog7918.ENSLOCP00000010472
Preferred nameVPS28
KEGG koko:K12184
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000813,GO:0001654,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007010,GO:0007034,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008593,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010605,GO:0010646,GO:0010648,GO:0010796,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030029,GO:0030036,GO:0030154,GO:0030163,GO:0030182,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032535,GO:0032801,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0040008,GO:0042058,GO:0042059,GO:0042551,GO:0042886,GO:0043112,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045324,GO:0045926,GO:0046907,GO:0048232,GO:0048468,GO:0048469,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051036,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0060255,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090066,GO:0097352,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1903320,GO:1903321
EggNOG free text desc.Vacuolar protein sorting-associated protein 28 homolog
EggNOG OGs38D26@33154,3BC2W@33208,3D18V@33213,480WT@7711,48WFW@7742,4A0TK@7898,KOG3284@1,KOG3284@2759
COG Functional cat.U
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Exons1
Model size261
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.5082173-CDS-M-pyrifera_M_contig122245:262..5111622815742.5082173-CDS-M-pyrifera_M_contig122245:262..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122245 263..511 -
1692277548.1081994-CDS-M-pyrifera_M_contig122245:262..5111692277548.1081994-CDS-M-pyrifera_M_contig122245:262..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122245 263..511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.5194106-UTR-M-pyrifera_M_contig122245:511..5231622815742.5194106-UTR-M-pyrifera_M_contig122245:511..523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122245 512..523 -
1692277548.1217327-UTR-M-pyrifera_M_contig122245:511..5231692277548.1217327-UTR-M-pyrifera_M_contig122245:511..523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122245 512..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122245.4590.1prot_M-pyrifera_M_contig122245.4590.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122245 263..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122245.4590.1

>prot_M-pyrifera_M_contig122245.4590.1 ID=prot_M-pyrifera_M_contig122245.4590.1|Name=mRNA_M-pyrifera_M_contig122245.4590.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MDGLEYGHRSKTKLFPNIIKIKNLLNGIPAVSPEFESVEIIEYWSRTIGS
MDLLEELDEDQVRQLRFDLEKAYNALNNHLGIG
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mRNA from alignment at M-pyrifera_M_contig122245:263..523-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122245.4590.1 ID=mRNA_M-pyrifera_M_contig122245.4590.1|Name=mRNA_M-pyrifera_M_contig122245.4590.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig122245:263..523- (Macrocystis pyrifera P11B4 male)
TTTGTGACTGCGATGGATGGTCTGGAATACGGCCATCGAAGCAAAACGAA
GCTCTTTCCAAACATCATCAAAATCAAAAACCTCCTCAACGGCATTCCAG
CAGTCAGTCCCGAATTTGAATCAGTCGAAATCATCGAATACTGGAGCAGA
ACCATTGGGTCGATGGACCTCCTGGAAGAACTTGACGAAGACCAAGTCCG
CCAGCTCCGATTCGACCTCGAAAAGGCCTACAATGCTCTCAACAACCACC
TCGGCATCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122245:263..523-

>mRNA_M-pyrifera_M_contig122245.4590.1 ID=mRNA_M-pyrifera_M_contig122245.4590.1|Name=mRNA_M-pyrifera_M_contig122245.4590.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig122245:263..523- (Macrocystis pyrifera P11B4 male)
ATGGATGGTCTGGAATACGGCCATCGAAGCAAAACGAAGCTCTTTCCAAA
CATCATCAAAATCAAAAACCTCCTCAACGGCATTCCAGCAGTCAGTCCCG
AATTTGAATCAGTCGAAATCATCGAATACTGGAGCAGAACCATTGGGTCG
ATGGACCTCCTGGAAGAACTTGACGAAGACCAAGTCCGCCAGCTCCGATT
CGACCTCGAAAAGGCCTACAATGCTCTCAACAACCACCTCGGCATCGGCA
TGGATGGTCTGGAATACGGCCATCGAAGCAAAACGAAGCTCTTTCCAAAC
ATCATCAAAATCAAAAACCTCCTCAACGGCATTCCAGCAGTCAGTCCCGA
ATTTGAATCAGTCGAAATCATCGAATACTGGAGCAGAACCATTGGGTCGA
TGGACCTCCTGGAAGAACTTGACGAAGACCAAGTCCGCCAGCTCCGATTC
GACCTCGAAAAGGCCTACAATGCTCTCAACAACCACCTCGGCATCGGC
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