mRNA_M-pyrifera_M_contig122215.4581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122215.4581.1
Unique NamemRNA_M-pyrifera_M_contig122215.4581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A2E9GBR3_9RHOB (Nitrite reductase n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9GBR3_9RHOB)

HSP 1 Score: 259 bits (662), Expect = 1.740e-84
Identity = 136/154 (88.31%), Postives = 146/154 (94.81%), Query Frame = 1 
Query:    4 ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIV  +K+EIER+ FS+IDLIIIG+ELFFIIHMFMG LAST+VQIEAA LFL G YTLPFWIFVVFIGMLVPALLEYLE++GQKIPV IPVALILFGN+MLRF+IVYAGQASRYLY
Sbjct:  160 ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVALTKNEIERKFFSRIDLIIIGVELFFIIHMFMGFLASTQVQIEAAQLFLGGSYTLPFWIFVVFIGMLVPALLEYLELKGQKIPVIIPVALILFGNVMLRFIIVYAGQASRYLY 313
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A2D6AV85_9BACT (Nitrite reductase n=2 Tax=Bacteria TaxID=2 RepID=A0A2D6AV85_9BACT)

HSP 1 Score: 256 bits (653), Expect = 4.030e-83
Identity = 135/155 (87.10%), Postives = 146/155 (94.19%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVI+ FSK+E+ERRLFS++DL+II +ELFFIIH+FMGLLASTEVQIEAA LFL GPYTLPFWIFVVFIGM+VPALLE LE+RGQKIPV IPV LIL GNIMLRF+ VYAGQASRYLY
Sbjct:  159 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIMGFSKNELERRLFSQLDLVIIAVELFFIIHLFMGLLASTEVQIEAAQLFLGGPYTLPFWIFVVFIGMVVPALLELLELRGQKIPVIIPVILILVGNIMLRFIFVYAGQASRYLY 313
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A2E2B905_9BACT (Nitrite reductase n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B905_9BACT)

HSP 1 Score: 253 bits (647), Expect = 3.270e-82
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            VILGIYTG+LLSAFNARPLWNTSILGPLFLASGLSAGAAVIV FSK+++ER L SKIDLI+IG ELF IIH+FMGLLASTEVQIEAA LFL G YTLPFWIFVVFIGM++PA+LE+LE+RGQKIPV IPV LILFGNIMLRF+IVYAGQASRYLY
Sbjct:  159 VILGIYTGVLLSAFNARPLWNTSILGPLFLASGLSAGAAVIVAFSKNKLERNLLSKIDLIVIGAELFLIIHLFMGLLASTEVQIEAAHLFLGGRYTLPFWIFVVFIGMIIPAILEFLELRGQKIPVAIPVILILFGNIMLRFIIVYAGQASRYLY 313
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A3M1XZL1_9BACT (Nitrite reductase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1XZL1_9BACT)

HSP 1 Score: 250 bits (639), Expect = 5.350e-81
Identity = 129/154 (83.77%), Postives = 144/154 (93.51%), Query Frame = 1 
Query:    4 ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAA I++ S++ IER  FSKIDL++IG+ELFFIIHMFMG LAS++VQI+AA LFL GPYTLPFWIFVVFIGM+VPALLE LE+RGQ+IPVF+P ALI+FGNIMLRFLIVYAGQASRYLY
Sbjct:  160 ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAFIMMISRNPIERHTFSKIDLLVIGVELFFIIHMFMGFLASSQVQIDAAGLFLGGPYTLPFWIFVVFIGMVVPALLEILELRGQRIPVFLPAALIIFGNIMLRFLIVYAGQASRYLY 313
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A553FC85_9BACT (Nitrite reductase n=1 Tax=Fulvivirga sp. M361 TaxID=2594266 RepID=A0A553FC85_9BACT)

HSP 1 Score: 240 bits (613), Expect = 4.660e-77
Identity = 124/155 (80.00%), Postives = 143/155 (92.26%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAA+I++F+K++IER+LFS+ID++II  ELFFI+HMFMG LASTEVQ EAA +FL G YTLPFWIFVVF+GM+VPA+LE LE+RGQ+IPV+IP  LIL GNIMLRF+IV AGQASRYLY
Sbjct:  159 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAALIIVFAKNKIERKLFSQIDIVIIAAELFFIVHMFMGFLASTEVQQEAAAMFLGGRYTLPFWIFVVFLGMIVPAILELLELRGQRIPVYIPAILILIGNIMLRFIIVEAGQASRYLY 313
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: UPI00037D96F8 (polysulfide reductase NrfD n=1 Tax=Flexithrix dorotheae TaxID=70993 RepID=UPI00037D96F8)

HSP 1 Score: 238 bits (608), Expect = 2.670e-76
Identity = 123/155 (79.35%), Postives = 140/155 (90.32%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            VILGIYTGILLSAFNARPLWNTSILGPLFL SGLSAGAA I+L SK+  E++LF KIDLIIIG+ELFFIIHMFMG LAST+VQI+AA LFL G YTLPFWIFVVF+GM+VPALLEYLE++GQKIP +IP  L++FG++MLRF+IV AGQ SRYLY
Sbjct:  159 VILGIYTGILLSAFNARPLWNTSILGPLFLTSGLSAGAAFILLISKNNFEKQLFRKIDLIIIGVELFFIIHMFMGFLASTQVQIDAAKLFLGGDYTLPFWIFVVFLGMIVPALLEYLEMKGQKIPSYIPAILVIFGSLMLRFIIVNAGQVSRYLY 313
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BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A2T5C2D4_9BACT (Formate-dependent nitrite reductase membrane component NrfD n=1 Tax=Mangrovibacterium marinum TaxID=1639118 RepID=A0A2T5C2D4_9BACT)

HSP 1 Score: 228 bits (581), Expect = 3.270e-72
Identity = 117/155 (75.48%), Postives = 138/155 (89.03%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            +ILGIYTGIL SAFNARPLWNTSILGPLFLASGLSAGAA I+LF++S  ER LF++IDL++IGIELF IIHMFMG  AST+VQIEA+ LFL GPYT PFWIFVV +GM+VPA LE LE+R +KIPV++PVAL+LFG++MLRF+I YAGQ SR+LY
Sbjct:  159 LILGIYTGILFSAFNARPLWNTSILGPLFLASGLSAGAATIILFARSHDERLLFARIDLMLIGIELFLIIHMFMGFRASTQVQIEASGLFLGGPYTAPFWIFVVMLGMVVPAFLEILELRHKKIPVYLPVALVLFGSLMLRFIIAYAGQFSRWLY 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A2V3ZXS2_9BACT (Nitrite reductase n=5 Tax=Marinifilum TaxID=866673 RepID=A0A2V3ZXS2_9BACT)

HSP 1 Score: 226 bits (575), Expect = 2.640e-71
Identity = 116/154 (75.32%), Postives = 137/154 (88.96%), Query Frame = 1 
Query:    4 ILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            ILGIYTGIL SAFNARPLWNTSILGPLFLASGLSAGAAV++  SK+  ER+ F+++DL+IIGIELF IIHMFMG LAST+VQI+AA LFL G YT PFWIFVVF+GM+VPA+LE +E++G KIPV IPV L+LFG++MLRF+I YAGQASR+LY
Sbjct:  160 ILGIYTGILFSAFNARPLWNTSILGPLFLASGLSAGAAVVIWMSKNHAERKRFAQLDLMIIGIELFLIIHMFMGFLASTQVQIDAANLFLGGEYTAPFWIFVVFLGMIVPAILEGMELKGFKIPVAIPVVLVLFGSVMLRFIIAYAGQASRWLY 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A353WVY8_9BACT (Nitrite reductase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A353WVY8_9BACT)

HSP 1 Score: 224 bits (570), Expect = 1.510e-70
Identity = 117/155 (75.48%), Postives = 132/155 (85.16%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            VILGIYTGILLSAFNARPLWNTSILGPLFL SGLSAGAA+I++ SK   ER+LFS+IDL +IGIELF IIHMFMG +ASTEVQIEAA LFL G YTLPFWI VV +GM +PA+LE  E+RG  IP +IP  LILFG++ LRF+I YAGQASRYLY
Sbjct:  159 VILGIYTGILLSAFNARPLWNTSILGPLFLVSGLSAGAALIMMLSKDRAERKLFSQIDLALIGIELFLIIHMFMGFMASTEVQIEAAQLFLGGAYTLPFWILVVILGMALPAVLEIWELRGHHIPAYIPALLILFGSLCLRFIITYAGQASRYLY 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Match: A0A1F3JUI1_9BACT (Nitrite reductase n=1 Tax=Bacteroidetes bacterium GWF2_33_38 TaxID=1797342 RepID=A0A1F3JUI1_9BACT)

HSP 1 Score: 223 bits (569), Expect = 2.140e-70
Identity = 112/155 (72.26%), Postives = 138/155 (89.03%), Query Frame = 1 
Query:    1 VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIERRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFWIFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQASRYLY 465
            +ILGIYTGILLSAFNARPLWNTSILGPLFL SGLSAGAA I++ SK++IER L+SKIDL IIG+E+FFI+HMFMG LAS++ QI+AA LFL G YTLPFW+FVVF+GM+VPA+LE +E+RG+ IP ++P  LI+ G+++LR +IVYAGQASRYLY
Sbjct:  159 IILGIYTGILLSAFNARPLWNTSILGPLFLTSGLSAGAAFIMMISKNKIERTLYSKIDLGIIGVEMFFIVHMFMGFLASSQAQIDAANLFLGGEYTLPFWVFVVFLGMIVPAILEIMELRGKHIPAYLPSILIISGSLLLRLIIVYAGQASRYLY 313
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122215.4581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9GBR3_9RHOB1.740e-8488.31Nitrite reductase n=1 Tax=Thalassobius sp. TaxID=1... [more]
A0A2D6AV85_9BACT4.030e-8387.10Nitrite reductase n=2 Tax=Bacteria TaxID=2 RepID=A... [more]
A0A2E2B905_9BACT3.270e-8285.81Nitrite reductase n=1 Tax=Phycisphaeraceae bacteri... [more]
A0A3M1XZL1_9BACT5.350e-8183.77Nitrite reductase n=1 Tax=Bacteroidetes bacterium ... [more]
A0A553FC85_9BACT4.660e-7780.00Nitrite reductase n=1 Tax=Fulvivirga sp. M361 TaxI... [more]
UPI00037D96F82.670e-7679.35polysulfide reductase NrfD n=1 Tax=Flexithrix doro... [more]
A0A2T5C2D4_9BACT3.270e-7275.48Formate-dependent nitrite reductase membrane compo... [more]
A0A2V3ZXS2_9BACT2.640e-7175.32Nitrite reductase n=5 Tax=Marinifilum TaxID=866673... [more]
A0A353WVY8_9BACT1.510e-7075.48Nitrite reductase n=1 Tax=Cytophagales bacterium T... [more]
A0A1F3JUI1_9BACT2.140e-7072.26Nitrite reductase n=1 Tax=Bacteroidetes bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122215contigM-pyrifera_M_contig122215:61..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score236.9
Seed ortholog evalue6.4e-60
Seed eggNOG ortholog1121904.ARBP01000009_gene4310
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Polysulphide reductase, NrfD
EggNOG OGs4NITJ@976,COG3301@1,COG3301@2
COG Functional cat.P
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.1626456-CDS-M-pyrifera_M_contig122215:60..5281622815742.1626456-CDS-M-pyrifera_M_contig122215:60..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122215 61..528 -
1692277547.9799533-CDS-M-pyrifera_M_contig122215:60..5281692277547.9799533-CDS-M-pyrifera_M_contig122215:60..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122215 61..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122215.4581.1prot_M-pyrifera_M_contig122215.4581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122215 61..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122215.4581.1

>prot_M-pyrifera_M_contig122215.4581.1 ID=prot_M-pyrifera_M_contig122215.4581.1|Name=mRNA_M-pyrifera_M_contig122215.4581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
VILGIYTGILLSAFNARPLWNTSILGPLFLASGLSAGAAVIVLFSKSEIE
RRLFSKIDLIIIGIELFFIIHMFMGLLASTEVQIEAAWLFLDGPYTLPFW
IFVVFIGMLVPALLEYLEIRGQKIPVFIPVALILFGNIMLRFLIVYAGQA
SRYLY*
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mRNA from alignment at M-pyrifera_M_contig122215:61..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122215.4581.1 ID=mRNA_M-pyrifera_M_contig122215.4581.1|Name=mRNA_M-pyrifera_M_contig122215.4581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig122215:61..528- (Macrocystis pyrifera P11B4 male)
GTGATTCTTGGGATATACACCGGAATTTTATTGTCGGCCTTCAATGCCAG
GCCACTCTGGAATACTTCCATATTGGGGCCATTATTCCTGGCATCGGGAC
TTTCTGCCGGCGCTGCCGTAATAGTGCTTTTTTCCAAAAGTGAGATAGAA
AGAAGATTGTTTAGCAAAATAGACCTGATCATCATTGGAATTGAATTGTT
TTTTATCATACACATGTTCATGGGATTGCTGGCCAGTACCGAAGTGCAAA
TTGAAGCTGCCTGGTTATTTCTTGATGGGCCCTACACCTTGCCATTTTGG
ATTTTTGTAGTCTTCATCGGGATGCTTGTCCCAGCTTTACTGGAATACTT
GGAAATAAGGGGTCAAAAAATCCCGGTATTCATTCCAGTAGCATTGATCC
TTTTTGGAAATATTATGTTAAGATTTTTGATTGTTTATGCTGGTCAAGCC
AGTAGATATCTGTATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122215:61..528-

>mRNA_M-pyrifera_M_contig122215.4581.1 ID=mRNA_M-pyrifera_M_contig122215.4581.1|Name=mRNA_M-pyrifera_M_contig122215.4581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig122215:61..528- (Macrocystis pyrifera P11B4 male)
GTGATTCTTGGGATATACACCGGAATTTTATTGTCGGCCTTCAATGCCAG
GCCACTCTGGAATACTTCCATATTGGGGCCATTATTCCTGGCATCGGGAC
TTTCTGCCGGCGCTGCCGTAATAGTGCTTTTTTCCAAAAGTGAGATAGAA
AGAAGATTGTTTAGCAAAATAGACCTGATCATCATTGGAATTGAATTGTT
TTTTATCATACACATGTTCATGGGATTGCTGGCCAGTACCGAAGTGCAAA
TTGAAGCTGCCTGGTTATTTCTTGATGGGCCCTACACCTTGCCATTTTGG
ATTTTTGTAGTCTTCATCGGGATGCTTGTCCCAGCTTTACTGGAATACTT
GGAAATAAGGGGTCAAAAAATCCCGGTATTCATTCCAGTAGCATTGATCC
TTTTTGGAAATATTATGTTAAGATTTTTGATTGTTTATGCTGGTCAAGCC
AGTAGATATCTGTATTGAGTGATTCTTGGGATATACACCGGAATTTTATT
GTCGGCCTTCAATGCCAGGCCACTCTGGAATACTTCCATATTGGGGCCAT
TATTCCTGGCATCGGGACTTTCTGCCGGCGCTGCCGTAATAGTGCTTTTT
TCCAAAAGTGAGATAGAAAGAAGATTGTTTAGCAAAATAGACCTGATCAT
CATTGGAATTGAATTGTTTTTTATCATACACATGTTCATGGGATTGCTGG
CCAGTACCGAAGTGCAAATTGAAGCTGCCTGGTTATTTCTTGATGGGCCC
TACACCTTGCCATTTTGGATTTTTGTAGTCTTCATCGGGATGCTTGTCCC
AGCTTTACTGGAATACTTGGAAATAAGGGGTCAAAAAATCCCGGTATTCA
TTCCAGTAGCATTGATCCTTTTTGGAAATATTATGTTAAGATTTTTGATT
GTTTATGCTGGTCAAGCCAGTAGATATCTGTATTGA
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